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Homology
BLAST of mRNA_Ecto-sp6_S_contig102.844.1 vs. uniprot
Match: D7FHF4_ECTSI (Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHF4_ECTSI) HSP 1 Score: 99.0 bits (245), Expect = 2.160e-22 Identity = 49/50 (98.00%), Postives = 50/50 (100.00%), Query Frame = 1 Query: 52 AEAKEVDLLRKLAVGLHPVLLVEPLTTVREVTKWYTVQLEKSFKSYRHRR 201
AEAKEVDLLRKLAVGLHPVLLVEPLTTVREVTKWYTVQLEKSFKSYRHR+
Sbjct: 1129 AEAKEVDLLRKLAVGLHPVLLVEPLTTVREVTKWYTVQLEKSFKSYRHRK 1178
BLAST of mRNA_Ecto-sp6_S_contig102.844.1 vs. uniprot
Match: A0A6H5K1B4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1B4_9PHAE) HSP 1 Score: 78.2 bits (191), Expect = 4.330e-15 Identity = 39/40 (97.50%), Postives = 39/40 (97.50%), Query Frame = 1 Query: 52 AEAKEVDLLRKLAVGLHPVLLVEPLTTVREVTKWYTVQLE 171
AEAKEVDLLRKLAVGLHPVLLVEPLTTVREVTKWYTVQ E
Sbjct: 893 AEAKEVDLLRKLAVGLHPVLLVEPLTTVREVTKWYTVQEE 932
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig102.844.1 vs. uniprot
Analysis Date: 2022-09-19 ( Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
| Match Name | E-value | Identity | Description | |
|---|
| D7FHF4_ECTSI | 2.160e-22 | 98.00 | Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... | [more] |
| A0A6H5K1B4_9PHAE | 4.330e-15 | 97.50 | Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... | [more] |
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 1 |
| Start | 0 |
| Model size | 238 |
| Hectar predicted targeting category | other localisation |
| Exons | 2 |
| Cds size | 237 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1682348736.9073088-CDS-Ecto-sp6_S_contig102:184940..185105 | 1682348736.9073088-CDS-Ecto-sp6_S_contig102:184940..185105 | Ectocarpus species6 EcLAC_371 | CDS | Ecto-sp6_S_contig102 184941..185105 + |
| 1682348736.9167752-CDS-Ecto-sp6_S_contig102:185504..185576 | 1682348736.9167752-CDS-Ecto-sp6_S_contig102:185504..185576 | Ectocarpus species6 EcLAC_371 | CDS | Ecto-sp6_S_contig102 185505..185576 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig102.844.1 >prot_Ecto-sp6_S_contig102.844.1 ID=prot_Ecto-sp6_S_contig102.844.1|Name=mRNA_Ecto-sp6_S_contig102.844.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=79bp
AAVREAEAEAEAEARERAEAKEVDLLRKLAVGLHPVLLVEPLTTVREVTK
WYTVQLEKSFKSYRHRRKKEKQAALEAR* back to topmRNA from alignment at Ecto-sp6_S_contig102:184941..185576+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp6_S_contig102.844.1 ID=mRNA_Ecto-sp6_S_contig102.844.1|Name=mRNA_Ecto-sp6_S_contig102.844.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=636bp|location=Sequence derived from alignment at Ecto-sp6_S_contig102:184941..185576+ (Ectocarpus species6 EcLAC_371)
GCAGCCGTGAGGGAAGCTGAGGCTGAGGCTGAGGCCGAGGCTAGGGAGAG
GGCGGAGGCGAAGGAGGTCGATCTGCTGCGGAAGCTGGCGGTGGGGCTGC
ACCCGGTGCTGCTGGTGGAGCCGCTGACGACCGTGCGGGAAGTGACCAAG
TGGTACACGGTTCAGGTAGATCATGTCGCTGCTGTTGATGTGGTCGCTGT
TGTTGTGGCTGCTGTTGCTGTTGCTGTTGCTGTTGTTGTGGTCGATCATA
CGTGTTGTTGTCGTCGTCGGTGGTGTTGGTGTTGGTGTTGTTGTTGATTA
TATTTGTTGTTGTTGTCGTTGTTTTTGGTGCTGAGGGGGTGGTGGTGGCG
GGTGGCCGTTGTCCTGCGTAAGTTGCCTACGATACCACACCCCATGGACC
GATTTTTTATGTCCCAAACGTCAGCGCCGTTGCATTTTCACCGCGTGCGT
CATGTGCCCTATAGAGCGGACGGTGTGCCTTTGGTCTTTTGGTGGGTGTG
GTTGTTGGAACCAACCCTCAAAGCGTCACCTATTCCGCCGCGTTTTTTTT
TTTTTGGTCTTCAGCTCGAGAAATCGTTCAAGAGCTACCGGCATAGGAGG
AAGAAGGAGAAACAAGCGGCTTTGGAGGCCAGGTGA back to topCoding sequence (CDS) from alignment at Ecto-sp6_S_contig102:184941..185576+ >mRNA_Ecto-sp6_S_contig102.844.1 ID=mRNA_Ecto-sp6_S_contig102.844.1|Name=mRNA_Ecto-sp6_S_contig102.844.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=237bp|location=Sequence derived from alignment at Ecto-sp6_S_contig102:184941..185576+ (Ectocarpus species6 EcLAC_371)
GCAGCCGTGAGGGAAGCTGAGGCTGAGGCTGAGGCCGAGGCTAGGGAGAG
GGCGGAGGCGAAGGAGGTCGATCTGCTGCGGAAGCTGGCGGTGGGGCTGC
ACCCGGTGCTGCTGGTGGAGCCGCTGACGACCGTGCGGGAAGTGACCAAG
TGGTACACGGTTCAGCTCGAGAAATCGTTCAAGAGCTACCGGCATAGGAG
GAAGAAGGAGAAACAAGCGGCTTTGGAGGCCAGGTGA back to top
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