mRNA_Ecto-sp6_S_contig102.844.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig102.844.1
Unique NamemRNA_Ecto-sp6_S_contig102.844.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig102.844.1 vs. uniprot
Match: D7FHF4_ECTSI (Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHF4_ECTSI)

HSP 1 Score: 99.0 bits (245), Expect = 2.160e-22
Identity = 49/50 (98.00%), Postives = 50/50 (100.00%), Query Frame = 1 
Query:   52 AEAKEVDLLRKLAVGLHPVLLVEPLTTVREVTKWYTVQLEKSFKSYRHRR 201
            AEAKEVDLLRKLAVGLHPVLLVEPLTTVREVTKWYTVQLEKSFKSYRHR+
Sbjct: 1129 AEAKEVDLLRKLAVGLHPVLLVEPLTTVREVTKWYTVQLEKSFKSYRHRK 1178
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BLAST of mRNA_Ecto-sp6_S_contig102.844.1 vs. uniprot
Match: A0A6H5K1B4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1B4_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 4.330e-15
Identity = 39/40 (97.50%), Postives = 39/40 (97.50%), Query Frame = 1 
Query:   52 AEAKEVDLLRKLAVGLHPVLLVEPLTTVREVTKWYTVQLE 171
            AEAKEVDLLRKLAVGLHPVLLVEPLTTVREVTKWYTVQ E
Sbjct:  893 AEAKEVDLLRKLAVGLHPVLLVEPLTTVREVTKWYTVQEE 932
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig102.844.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FHF4_ECTSI2.160e-2298.00Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5K1B4_9PHAE4.330e-1597.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig102contigEcto-sp6_S_contig102:184941..185576 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size238
Hectar predicted targeting categoryother localisation
Exons2
Cds size237
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348736.9073088-CDS-Ecto-sp6_S_contig102:184940..1851051682348736.9073088-CDS-Ecto-sp6_S_contig102:184940..185105Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig102 184941..185105 +
1682348736.9167752-CDS-Ecto-sp6_S_contig102:185504..1855761682348736.9167752-CDS-Ecto-sp6_S_contig102:185504..185576Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig102 185505..185576 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig102.844.1prot_Ecto-sp6_S_contig102.844.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig102 184941..185576 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig102.844.1

>prot_Ecto-sp6_S_contig102.844.1 ID=prot_Ecto-sp6_S_contig102.844.1|Name=mRNA_Ecto-sp6_S_contig102.844.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=79bp
AAVREAEAEAEAEARERAEAKEVDLLRKLAVGLHPVLLVEPLTTVREVTK
WYTVQLEKSFKSYRHRRKKEKQAALEAR*
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mRNA from alignment at Ecto-sp6_S_contig102:184941..185576+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig102.844.1 ID=mRNA_Ecto-sp6_S_contig102.844.1|Name=mRNA_Ecto-sp6_S_contig102.844.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=636bp|location=Sequence derived from alignment at Ecto-sp6_S_contig102:184941..185576+ (Ectocarpus species6 EcLAC_371)
GCAGCCGTGAGGGAAGCTGAGGCTGAGGCTGAGGCCGAGGCTAGGGAGAG
GGCGGAGGCGAAGGAGGTCGATCTGCTGCGGAAGCTGGCGGTGGGGCTGC
ACCCGGTGCTGCTGGTGGAGCCGCTGACGACCGTGCGGGAAGTGACCAAG
TGGTACACGGTTCAGGTAGATCATGTCGCTGCTGTTGATGTGGTCGCTGT
TGTTGTGGCTGCTGTTGCTGTTGCTGTTGCTGTTGTTGTGGTCGATCATA
CGTGTTGTTGTCGTCGTCGGTGGTGTTGGTGTTGGTGTTGTTGTTGATTA
TATTTGTTGTTGTTGTCGTTGTTTTTGGTGCTGAGGGGGTGGTGGTGGCG
GGTGGCCGTTGTCCTGCGTAAGTTGCCTACGATACCACACCCCATGGACC
GATTTTTTATGTCCCAAACGTCAGCGCCGTTGCATTTTCACCGCGTGCGT
CATGTGCCCTATAGAGCGGACGGTGTGCCTTTGGTCTTTTGGTGGGTGTG
GTTGTTGGAACCAACCCTCAAAGCGTCACCTATTCCGCCGCGTTTTTTTT
TTTTTGGTCTTCAGCTCGAGAAATCGTTCAAGAGCTACCGGCATAGGAGG
AAGAAGGAGAAACAAGCGGCTTTGGAGGCCAGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig102:184941..185576+

>mRNA_Ecto-sp6_S_contig102.844.1 ID=mRNA_Ecto-sp6_S_contig102.844.1|Name=mRNA_Ecto-sp6_S_contig102.844.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=237bp|location=Sequence derived from alignment at Ecto-sp6_S_contig102:184941..185576+ (Ectocarpus species6 EcLAC_371)
GCAGCCGTGAGGGAAGCTGAGGCTGAGGCTGAGGCCGAGGCTAGGGAGAG
GGCGGAGGCGAAGGAGGTCGATCTGCTGCGGAAGCTGGCGGTGGGGCTGC
ACCCGGTGCTGCTGGTGGAGCCGCTGACGACCGTGCGGGAAGTGACCAAG
TGGTACACGGTTCAGCTCGAGAAATCGTTCAAGAGCTACCGGCATAGGAG
GAAGAAGGAGAAACAAGCGGCTTTGGAGGCCAGGTGA
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