mRNA_Ecto-sp6_S_contig101.786.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Homology

BLAST of mRNA_Ecto-sp6_S_contig101.786.1 vs. uniprot
Match: D7FPM0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPM0_ECTSI)

HSP 1 Score: 323 bits (829), Expect = 6.990e-108
Identity = 165/165 (100.00%), Postives = 165/165 (100.00%), Query Frame = 1

Query:   19 MGPPPPTGEAQYVILRAIGGEVGNTAALAPKLGPLGLSPKKIGEDIQKNTQEWKGLPITVKLTIINRQATVSVIPAASSLILKALNEPERDRKKVKNIKHDGNVTLDQVIEIARVMRERSMARTLAGTVKEMLGTCNSVGCTVNGQSPRDIQSGISEGEIVIPDE 513
            MGPPPPTGEAQYVILRAIGGEVGNTAALAPKLGPLGLSPKKIGEDIQKNTQEWKGLPITVKLTIINRQATVSVIPAASSLILKALNEPERDRKKVKNIKHDGNVTLDQVIEIARVMRERSMARTLAGTVKEMLGTCNSVGCTVNGQSPRDIQSGISEGEIVIPDE
Sbjct:    1 MGPPPPTGEAQYVILRAIGGEVGNTAALAPKLGPLGLSPKKIGEDIQKNTQEWKGLPITVKLTIINRQATVSVIPAASSLILKALNEPERDRKKVKNIKHDGNVTLDQVIEIARVMRERSMARTLAGTVKEMLGTCNSVGCTVNGQSPRDIQSGISEGEIVIPDE 165

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BLAST of mRNA_Ecto-sp6_S_contig101.786.1 vs. uniprot
Match: A0A835YTI9_9STRA (Ribosomal protein L11 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTI9_9STRA)

HSP 1 Score: 278 bits (711), Expect = 5.250e-90
Identity = 138/165 (83.64%), Postives = 155/165 (93.94%), Query Frame = 1

Query:   19 MGPPPP-TGEAQYVILRAIGGEVGNTAALAPKLGPLGLSPKKIGEDIQKNTQEWKGLPITVKLTIINRQATVSVIPAASSLILKALNEPERDRKKVKNIKHDGNVTLDQVIEIARVMRERSMARTLAGTVKEMLGTCNSVGCTVNGQSPRDIQSGISEGEIVIPD 510
            MGPPPP + E +YV+LRAIGGEVGNTAALAPKLGPLGLSPKKIGEDIQK+T +WKGLPITVKLTI+NRQATVSVIP+ASSLILKALNEPERDRKKVK++KHDGNVTLDQ+I++ARVMR RSMARTLAGTVKE+LGT  SVGCTVNG +PRD+Q  I++GEIVIPD
Sbjct:    1 MGPPPPASAEEKYVVLRAIGGEVGNTAALAPKLGPLGLSPKKIGEDIQKSTMDWKGLPITVKLTIVNRQATVSVIPSASSLILKALNEPERDRKKVKHVKHDGNVTLDQIIDVARVMRARSMARTLAGTVKEVLGTAFSVGCTVNGMAPRDVQKAITDGEIVIPD 165

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BLAST of mRNA_Ecto-sp6_S_contig101.786.1 vs. uniprot
Match: A0A7S2UAZ7_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UAZ7_9STRA)

HSP 1 Score: 259 bits (663), Expect = 8.690e-83
Identity = 122/165 (73.94%), Postives = 152/165 (92.12%), Query Frame = 1

Query:   19 MGPPPPTGEAQYVILRAIGGEVGNTAALAPKLGPLGLSPKKIGEDIQKNTQEWKGLPITVKLTIINRQATVSVIPAASSLILKALNEPERDRKKVKNIKHDGNVTLDQVIEIARVMRERSMARTLAGTVKEMLGTCNSVGCTVNGQSPRDIQSGISEGEIVIPDE 513
            MGPPP + + Q VI+R +GGEVG+ ++LAPK+GPLGLSPKK+GEDIQK T +WKG+ +TVKLT++NRQATV++IPAASSLI+KALNEP RDRKKVKN+ H+GN+TL+QVI+IA+VMRERSMAR L+GTVKE+LGTCNS+GCTVNG+SPRDIQ+GI +GE+VIPDE
Sbjct:    1 MGPPP-SNDVQIVIMRTVGGEVGSASSLAPKIGPLGLSPKKVGEDIQKATMDWKGMNVTVKLTVVNRQATVTMIPAASSLIMKALNEPVRDRKKVKNVVHNGNITLEQVIDIAKVMRERSMARKLSGTVKEILGTCNSIGCTVNGESPRDIQAGIDDGEVVIPDE 164

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BLAST of mRNA_Ecto-sp6_S_contig101.786.1 vs. uniprot
Match: A0A7S1E7R7_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1E7R7_9STRA)

HSP 1 Score: 252 bits (644), Expect = 1.060e-79
Identity = 118/165 (71.52%), Postives = 148/165 (89.70%), Query Frame = 1

Query:   16 TMGPPPPTGEAQYVILRAIGGEVGNTAALAPKLGPLGLSPKKIGEDIQKNTQEWKGLPITVKLTIINRQATVSVIPAASSLILKALNEPERDRKKVKNIKHDGNVTLDQVIEIARVMRERSMARTLAGTVKEMLGTCNSVGCTVNGQSPRDIQSGISEGEIVIPD 510
            TMGPPP + + + VI+R +GGE+G+ ++LAPK+GPLGLSPKK+GEDIQK T +WKGL +TVKLT++NRQATVS+IP+ASSL++KALNEP RDRKKVKN+KHDGN+ LDQ+IEIAR MRERSMA+ LAGTVKE+LGTCNS+GCTVNG+SPRD+Q  I +GE+ IP+
Sbjct:   15 TMGPPP-SDDVKIVIMRTVGGEIGSASSLAPKIGPLGLSPKKVGEDIQKATLDWKGLNVTVKLTVVNRQATVSMIPSASSLVMKALNEPVRDRKKVKNVKHDGNIALDQIIEIARQMRERSMAKKLAGTVKEILGTCNSIGCTVNGESPRDLQQMIDDGEVEIPE 178

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BLAST of mRNA_Ecto-sp6_S_contig101.786.1 vs. uniprot
Match: A0A7R9U1B9_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U1B9_9STRA)

HSP 1 Score: 251 bits (641), Expect = 3.800e-79
Identity = 117/165 (70.91%), Postives = 146/165 (88.48%), Query Frame = 1

Query:   19 MGPPPPTGEAQYVILRAIGGEVGNTAALAPKLGPLGLSPKKIGEDIQKNTQEWKGLPITVKLTIINRQATVSVIPAASSLILKALNEPERDRKKVKNIKHDGNVTLDQVIEIARVMRERSMARTLAGTVKEMLGTCNSVGCTVNGQSPRDIQSGISEGEIVIPDE 513
            MGPPPP GE + VI+RAIGGEVG+ A+LAPKLGPLGLSPKK+GEDI+  T +WKGL +TVKL ++NRQATVSVIP++SSL++KALNEP RDRKKVK++ HDGN+TLDQVI++AR+MRERSMART+ GTVKE+LGTC S+GCTVNG+ P+ +Q  I++GE+ I DE
Sbjct:   22 MGPPPPAGEEKVVIMRAIGGEVGSAASLAPKLGPLGLSPKKVGEDIKAATMDWKGLAVTVKLVVVNRQATVSVIPSSSSLVMKALNEPPRDRKKVKHVVHDGNITLDQVIDVARIMRERSMARTMGGTVKEILGTCVSIGCTVNGEHPKTLQQQITDGELEIADE 186

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BLAST of mRNA_Ecto-sp6_S_contig101.786.1 vs. uniprot
Match: A0A7S3PV60_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PV60_9STRA)

HSP 1 Score: 249 bits (636), Expect = 1.030e-78
Identity = 119/165 (72.12%), Postives = 146/165 (88.48%), Query Frame = 1

Query:   19 MGPPPPTGEAQYVILRAIGGEVGNTAALAPKLGPLGLSPKKIGEDIQKNTQEWKGLPITVKLTIINRQATVSVIPAASSLILKALNEPERDRKKVKNIKHDGNVTLDQVIEIARVMRERSMARTLAGTVKEMLGTCNSVGCTVNGQSPRDIQSGISEGEIVIPDE 513
            MGPPP + E + VI+R +GGEV   ++LAPK+GPLGLSPKK+GEDIQK T++WKGL +TVKLT++NRQATV++IP++SSLI+KALNEP RDRKKVKN+ HDGN+TLDQVIEIAR MR+RS A+ L+GTVKEMLGTCNS+GCTVNG SPRD+Q+GI +GEI IP E
Sbjct:    1 MGPPP-SDEVKIVIMRTVGGEVAAASSLAPKIGPLGLSPKKVGEDIQKATKDWKGLSVTVKLTVVNRQATVTMIPSSSSLIMKALNEPVRDRKKVKNVTHDGNLTLDQVIEIARAMRDRSCAKELSGTVKEMLGTCNSIGCTVNGDSPRDVQAGIDDGEIEIPAE 164

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BLAST of mRNA_Ecto-sp6_S_contig101.786.1 vs. uniprot
Match: B8BTS3_THAPS (RL12, ribosomal protein 11 60S large ribosomal subunit n=10 Tax=Ochrophyta TaxID=2696291 RepID=B8BTS3_THAPS)

HSP 1 Score: 249 bits (635), Expect = 1.450e-78
Identity = 116/161 (72.05%), Postives = 146/161 (90.68%), Query Frame = 1

Query:   31 PPTGEAQYVILRAIGGEVGNTAALAPKLGPLGLSPKKIGEDIQKNTQEWKGLPITVKLTIINRQATVSVIPAASSLILKALNEPERDRKKVKNIKHDGNVTLDQVIEIARVMRERSMARTLAGTVKEMLGTCNSVGCTVNGQSPRDIQSGISEGEIVIPDE 513
            PP+ + + VI+R +GGEVG+ ++LAPK+GPLGLSPKK+GEDIQK T +WKGL +TVKLT++NRQATVS+IP+ASSL++KALNEP RDRKKVKN+ H+GN+TLDQVI+IAR MRERSMA+ LAGTVKE+LGT NS+GCTVNG+SPRDIQ+GI +GE+ IP+E
Sbjct:    4 PPSDDVKIVIMRTVGGEVGSASSLAPKIGPLGLSPKKVGEDIQKATMDWKGLNVTVKLTVVNRQATVSMIPSASSLVMKALNEPVRDRKKVKNVVHNGNITLDQVIDIARQMRERSMAKKLAGTVKEILGTANSIGCTVNGESPRDIQAGIDDGEVEIPEE 164

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BLAST of mRNA_Ecto-sp6_S_contig101.786.1 vs. uniprot
Match: A0A7S1BV82_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BV82_9STRA)

HSP 1 Score: 245 bits (625), Expect = 4.660e-77
Identity = 117/165 (70.91%), Postives = 146/165 (88.48%), Query Frame = 1

Query:   19 MGPPPPTGEAQYVILRAIGGEVGNTAALAPKLGPLGLSPKKIGEDIQKNTQEWKGLPITVKLTIINRQATVSVIPAASSLILKALNEPERDRKKVKNIKHDGNVTLDQVIEIARVMRERSMARTLAGTVKEMLGTCNSVGCTVNGQSPRDIQSGISEGEIVIPDE 513
            MGPPP + + + VI+R +GGEVG  ++LAPK+GPLGLSPKK+GEDIQK T +WKGL +TVKLT++NRQATVS+IP+ASSL++KALNEP RDRKK KNI H+GN+TLDQVI+IAR MRERSMA+ L+GTVKE+LGT NS+GCTVNG++PRD+QS I +GE+ IPDE
Sbjct:    1 MGPPP-SDDVKIVIMRTVGGEVGAASSLAPKIGPLGLSPKKVGEDIQKATLDWKGLNVTVKLTVVNRQATVSMIPSASSLVMKALNEPVRDRKKEKNIVHNGNITLDQVIDIARQMRERSMAKELSGTVKEILGTANSIGCTVNGENPRDVQSAIDDGEVEIPDE 164

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BLAST of mRNA_Ecto-sp6_S_contig101.786.1 vs. uniprot
Match: A0A7S1XKH5_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XKH5_9STRA)

HSP 1 Score: 246 bits (627), Expect = 6.170e-77
Identity = 115/161 (71.43%), Postives = 145/161 (90.06%), Query Frame = 1

Query:   31 PPTGEAQYVILRAIGGEVGNTAALAPKLGPLGLSPKKIGEDIQKNTQEWKGLPITVKLTIINRQATVSVIPAASSLILKALNEPERDRKKVKNIKHDGNVTLDQVIEIARVMRERSMARTLAGTVKEMLGTCNSVGCTVNGQSPRDIQSGISEGEIVIPDE 513
            PP GE + V++RAIGGEVG+ A+LAPKLGPLGLSPKK+GEDI+K T +WKGL +TVKL ++NRQATVSVIP+ASSL++KALNEP RDRKKVK++ HDGN+TLDQVI++ARVMRERSMAR L+GTVKE+LGTC S+GC+VNG++PR +Q  I++GE+ IP+E
Sbjct:   33 PPAGEEKIVVMRAIGGEVGSAASLAPKLGPLGLSPKKVGEDIKKATMDWKGLSVTVKLVVVNRQATVSVIPSASSLVMKALNEPVRDRKKVKHVVHDGNITLDQVIDVARVMRERSMARELSGTVKEILGTCVSIGCSVNGENPRTLQQQITDGELEIPEE 193

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BLAST of mRNA_Ecto-sp6_S_contig101.786.1 vs. uniprot
Match: K0TFA0_THAOC (Uncharacterized protein n=3 Tax=Eukaryota TaxID=2759 RepID=K0TFA0_THAOC)

HSP 1 Score: 243 bits (621), Expect = 1.870e-76
Identity = 114/161 (70.81%), Postives = 145/161 (90.06%), Query Frame = 1

Query:   31 PPTGEAQYVILRAIGGEVGNTAALAPKLGPLGLSPKKIGEDIQKNTQEWKGLPITVKLTIINRQATVSVIPAASSLILKALNEPERDRKKVKNIKHDGNVTLDQVIEIARVMRERSMARTLAGTVKEMLGTCNSVGCTVNGQSPRDIQSGISEGEIVIPDE 513
            PP+ + + VI+R +GGEV   +ALAPK+GPLGLSPKK+GEDI K T++WKGL +TVKLT++NRQA+VS+IP++SSLI+KALNEP RDRKKVKNI H+GN+TLDQVI+IA+ MRERSMA+ L+GTVKE+LGTCNS+GCTVNG+SPRDIQ+GI +GE+ IP+E
Sbjct:    4 PPSDDVKIVIMRTVGGEVAPASALAPKIGPLGLSPKKVGEDIMKATKDWKGLNVTVKLTVVNRQASVSMIPSSSSLIMKALNEPYRDRKKVKNIVHNGNLTLDQVIDIAKQMRERSMAKKLSGTVKEILGTCNSIGCTVNGESPRDIQAGIDDGEVEIPEE 164

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp6_S_contig101.786.1 vs. uniprot

BLAST of mRNA_Ecto-sp6_S_contig101.786.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25

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POSITION

0


Match Name	E-value	Identity	Description
D7FPM0_ECTSI	6.990e-108	100.00	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]
A0A835YTI9_9STRA	5.250e-90	83.64	Ribosomal protein L11 n=1 Tax=Tribonema minus TaxI...	[more]
A0A7S2UAZ7_9STRA	8.690e-83	73.94	Hypothetical protein n=1 Tax=Attheya septentrional...	[more]
A0A7S1E7R7_9STRA	1.060e-79	71.52	Hypothetical protein n=1 Tax=Thalassionema nitzsch...	[more]
A0A7R9U1B9_9STRA	3.800e-79	70.91	Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi...	[more]
A0A7S3PV60_9STRA	1.030e-78	72.12	Hypothetical protein n=1 Tax=Chaetoceros debilis T...	[more]
B8BTS3_THAPS	1.450e-78	72.05	RL12, ribosomal protein 11 60S large ribosomal sub...	[more]
A0A7S1BV82_9STRA	4.660e-77	70.91	Hypothetical protein n=1 Tax=Corethron hystrix Tax...	[more]
A0A7S1XKH5_9STRA	6.170e-77	71.43	Hypothetical protein n=1 Tax=Phaeomonas parva TaxI...	[more]
K0TFA0_THAOC	1.870e-76	70.81	Uncharacterized protein n=3 Tax=Eukaryota TaxID=27...	[more]

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Properties


Property Name	Value
Taxonomic scope	Eukaryota
Stop	1
Start	1
Seed ortholog score	324.3
Seed ortholog evalue	3.3e-86
Seed eggNOG ortholog	2880.D7FPM0
Preferred name	rpl12
Model size	1239
KEGG ko	ko:K02870
KEGG Pathway	ko03010,map03010
KEGG Module	M00177
Hectar predicted targeting category	other localisation
GOs	GO:0000027,GO:0000381,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0010468,GO:0015934,GO:0016043,GO:0019219,GO:0019222,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0031323,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043484,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0048024,GO:0050684,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065003,GO:0065007,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1903311,GO:1990904
Exons	5
EggNOG free text desc.	ribosomal large subunit assembly
EggNOG OGs	COG0080@1,KOG0886@2759
Ec32 ortholog description	60S ribosomal protein L12
Ec32 ortholog	Ec-16_001460.1
Cds size	498
COG Functional cat.	J
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	br01610,ko00000,ko00001,ko00002,ko03011