mRNA_Ecto-sp6_S_contig100.759.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig100.759.1
Unique NamemRNA_Ecto-sp6_S_contig100.759.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig100.759.1 vs. uniprot
Match: D7FRL3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRL3_ECTSI)

HSP 1 Score: 327 bits (838), Expect = 5.810e-110
Identity = 190/193 (98.45%), Postives = 191/193 (98.96%), Query Frame = 3 
Query:  246 MFPDEYGNFNVPNGASLSKKVLLERVKRLKSELALLKDIKEDGDARLKAQELDFARRNKEIQAQKEENERQLQMNDKALSDAALGVRTRDRQIINLGDKICRGRMAMQQLQKDKHQVVDRAKREAREEMNAERQXXXXXXXXX-QPSQGMQIKSIGHGSGGAGPHFTRASTGGGMGANPVRVFKAPGGGRAGK 821
            MFPDEYGNFNVPNGASLSKKVLLERVKRLKSELALLK+IKEDGDARLKAQELDFARRNKEIQAQKEENERQLQMNDKALSDAALGVRTRDRQIINLG KICRGRMAMQQLQKDKHQVVDRAKREAREEMNAERQXXXXXXXXX QPSQGMQIKSIGHGSGGAGPHFTRASTGGGMGANPVRVFKAPGGGRAGK
Sbjct:    1 MFPDEYGNFNVPNGASLSKKVLLERVKRLKSELALLKEIKEDGDARLKAQELDFARRNKEIQAQKEENERQLQMNDKALSDAALGVRTRDRQIINLGGKICRGRMAMQQLQKDKHQVVDRAKREAREEMNAERQXXXXXXXXXXQPSQGMQIKSIGHGSGGAGPHFTRASTGGGMGANPVRVFKAPGGGRAGK 193
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig100.759.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FRL3_ECTSI5.810e-11098.45Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig100contigEcto-sp6_S_contig100:558615..562480 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1017
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-12_002610.1
Cds size648
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig100.759.1prot_Ecto-sp6_S_contig100.759.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig100 559632..562287 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348727.1909199-UTR-Ecto-sp6_S_contig100:558614..5587151682348727.1909199-UTR-Ecto-sp6_S_contig100:558614..558715Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig100 558615..558715 +
1682348727.2009413-UTR-Ecto-sp6_S_contig100:559556..5596311682348727.2009413-UTR-Ecto-sp6_S_contig100:559556..559631Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig100 559557..559631 +
1682348727.2436764-UTR-Ecto-sp6_S_contig100:562287..5624801682348727.2436764-UTR-Ecto-sp6_S_contig100:562287..562480Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig100 562288..562480 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348727.2105927-CDS-Ecto-sp6_S_contig100:559631..5597241682348727.2105927-CDS-Ecto-sp6_S_contig100:559631..559724Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig100 559632..559724 +
1682348727.2187366-CDS-Ecto-sp6_S_contig100:560180..5603001682348727.2187366-CDS-Ecto-sp6_S_contig100:560180..560300Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig100 560181..560300 +
1682348727.2273977-CDS-Ecto-sp6_S_contig100:560730..5608831682348727.2273977-CDS-Ecto-sp6_S_contig100:560730..560883Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig100 560731..560883 +
1682348727.2359936-CDS-Ecto-sp6_S_contig100:562005..5622871682348727.2359936-CDS-Ecto-sp6_S_contig100:562005..562287Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig100 562006..562287 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig100.759.1

>prot_Ecto-sp6_S_contig100.759.1 ID=prot_Ecto-sp6_S_contig100.759.1|Name=mRNA_Ecto-sp6_S_contig100.759.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=216bp
MRDAHYRGVPALGGPMSSTDPQRMFPDEYGNFNVPNGASLSKKVLLERVK
RLKSELALLKDIKEDGDARLKAQELDFARRNKEIQAQKEENERQLQMNDK
ALSDAALGVRTRDRQIINLGDKICRGRMAMQQLQKDKHQVVDRAKREARE
EMNAERQQQQQKKKKQQPSQGMQIKSIGHGSGGAGPHFTRASTGGGMGAN
PVRVFKAPGGGRAGK*
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mRNA from alignment at Ecto-sp6_S_contig100:558615..562480+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig100.759.1 ID=mRNA_Ecto-sp6_S_contig100.759.1|Name=mRNA_Ecto-sp6_S_contig100.759.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=3866bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:558615..562480+ (Ectocarpus species6 EcLAC_371)
GCTCTCCTCCCACAGCTCGCACGTTGATTCCGATTCCACACCCTGACGCT
TTTGCCGCCGGAACCTCTGCTGCATACAGCATCAAGGCCGCCAACCAGCT
TGTGAGTGCTGTTCGAGGTGGCATGGTCAGTTTGAACGAATTGCTGGTTG
AAGCTCCCACGGGTAGACTCCTGCTGCATTGTACTCCTGTGCTTCTTGAC
AGCGGATCCTCTGACGTGAAAAAAGAGTCACTCATGTCTCACTTTTTAGG
TGAACTGCACTTGAGATAGATGCACTCCTGCTGCAAGCAGCGGATGCAAA
CAAGCTGCATTGTGAAACATCTCATCCGTGCTTTGCCCAAGCTTCGTTAG
GGACGACCGCAGTACACTAGGTCGGTCTTGGTCTACCCTTGACAAAGAGC
CTAAAAATGAAGAGCCAAGCCGGTGCGTGTGTGGAGTGTTCAAAGTGGAG
ATTCGGGATGCATCTACATTCGTTTGCCTGCACCAATCACCGTACAAGCT
TTGGGTTCTCTCCTTCGCAGGTACGGTCCAGGGACACACAGAAGAGATCC
TCTACGGAACATGCCTTCAATTCTACGGCGAGAAGGGTGCAGCAACGGTG
TTGCCCCCCCGTGTGTTCAAGAACCAAAAAACTGATCCGAGAACACGCCG
CCTTTCAGCCGGAGTGCACAACAGCACGACAGCACTTGCCTTAATCCGGA
GTAGCATAGCATACAATAAATGTCCTGGCTCTAGCATAGCGGAGAGCAGC
ACCCACAACTCGCTCGTTTGTTCTCGTGATGGCCACAGCTCCAGCAGTAG
GTTCTCATCAACCTCCCTTCCCTTTACACCCTTCCCGATTGGTTTATAAC
CACATCATTGCGAGGTAATGCTAGCTTCTTCGTCGCTAAAACGGGTTTCC
CATTTTCTTACTTTCTTTCCCGTTTTTCTCGTTGTGGAGCAGGAGCGTAG
TTGTCGATTCGCCGACCCGACCACACACCGGCACGCGCACGCTCATCTTC
GAGGGTGTTGCGGAGGCATGCGCGACGCACACTACCGCGGTGTGCCAGCG
CTGGGAGGACCCATGTCGAGTACTGATCCCCAACGCATGTTCCCAGACGA
GTATGGCAACGTGAGTCGGGCTGCCGAGAATATGACACTGCGACGGCATC
TGGCGTGTCTGTTGACTATGCAAGTGTGTAGCGTTCGCGAAATGTGGACA
CAGCCGTAGTCGTCGGGAGCAATGGGCATGAACACACGCGGAGAGGGAGC
GCGACTTATTTTGTCGGTGGGTGTTTTACGGCTGCCGTGCGCGACCGGTG
TGTAGGCTACTGCCGTACTGCTGTTGCGCACGCCGAGGAAAACGTTGGTT
CTCGACCACCGCAACCTGAACAGCGTTGGTGGACGGCGCGGTGGGTCTAC
CAGTGCTTCTTCGTATTGTCGAGCTTAAGTGTTTTAGTACAGCCGTGCAC
GATTCTGCCCGATCTTGGGAAGAGTTCGACGCAATGCCCCAACACCGCCC
CTTTCTCTGCGATACCCCGCTGTCTGTCGGCCCCTGTCGCCCTCTTCGTT
TCTTCTTTGGCCTCAGTTCAACGTCCCTAACGGCGCATCACTTAGCAAGA
AAGTTCTGCTGGAGCGAGTCAAGCGCTTGAAATCCGAGCTAGCCCTCCTC
AAAGATATCAAGGAGGACGGGGACGCCAGACTCAAAGTACGTTCCGTTTT
AGCGATAGCGGCACGTTCCGTTTTAGCGATGGCGGCACGTTCCGTTTTAG
CGATGGCGGTACGTTCCGTTTTAGCGATGGCGGTACGTTCCGAAAGAGCC
GTTGGTAGGTGGGGCACCGCAGAATGGATTGTGATTTGTTTCTATATTGT
CCGCCACGCTGTTTACTTTGGTAGCCGAGAGGAGAAGCTTGCTCGTTGCG
ACGGCAGCGCTGGTTGTTTGGCTGCCGCAGGCCTAGGCGTGGAGCGGAAA
CGACCGGGGTGGGTTGGCAGCGCAAAACGAACACAATACCGTCGCTGTTA
CTATCGGGCCTCACCGCCTGCCACTCGCTCTCTCTCTTACCtTTTTTTTA
TTTCCGCGCGTTTTTTCTTTTTCGCCTTGGTGTGATGTCTCCGGCGGCGA
ACGAAAAAAAACACAGGCACAAGAGCTTGATTTCGCCAGGAGAAATAAGG
AGATCCAGGCGCAGAAGGAGGAAAACGAGAGGCAGCTGCAGATGAACGAC
AAGGCGCTGAGCGATGCGGCTCTGGGAGTGCGCACGAGGGACCGGCAAAT
CATCAATCTGGGAGACAAGGTGCGGCGGTGTGGTATCATGTACGCTGCCG
CGGATGTTTTATTGCGTCGTACGCGCTGGCCGGCAGGTACCCATGGTCGC
TGCGCGAAAGAACCCGTGTCTTCCGGGCTCGTTTTTCTTTCTCTCTCTCT
CTTGGCTCCTTGGAAACGCGTCCTAGGACACAGACAACACCGCGCGTGTG
ACCATGTACCCCTTGCCAGCAAGGGATAGTCCGCCGTGTGTAGTTGCGCC
TGACTGTGATATCTACGTCTCTTTGTTGCATCGTAGTCGGTTCCTGGGTC
TCGGCAGTTTCATTAGGTTTTTCTATTTTTTTCGTATGTACGGGGCTCTT
ACGCGCGCGTGGCGTGTTTTTTTTTGTGTTTGTTTATCGGTAGGCAGAAG
GCGGCCGGCCTTTCTCTGACAAAACCGGTTGTATGTGGTGCTCGTTCAAG
TTACCCCCCCcaCCGACAATACAACAACCTGCGTAGATTGTTCGACGTAT
GCGTTTCAGTCTTGAAACCATGGCTTGCGCTCGAACTCAAAGAGCGATCG
TGCGTCCACCGCTGCATGCCCTCAATCATTCCTTTGGTCGTATGGACTAC
GTACACGATACAGCAGCGCCACCCTCCTCCGTCCCGTCCCCAACACTACA
ATAATCGAGCGTGGTACCGGGAAATCGCTATTCATAGACAATTAATAGGC
AGGTTTTTGATAGACAGGAAAGCAGCGCGAGCAGCCACAAACGCCGCTAC
CCTCCCAGCGCAAGCACCCGACAGAGGCAAAAAAGCAACGATCTGGCCAA
GCGGTGTCGTCTGGCAACACATCGCGGTACCGCCCCGCCCGAAGACGCCT
GGCCGTTTTCGTTTTTTTGTGTGTGTCCGGCTGGAGAGGGCTGTCTCGTC
GTTTGTCTTCTTTGGTTATGCTCTCCACATGTTAAATTGGCATCTCTTTC
TTCTGTTCTTGGTGTGTACGGTCCCGtaCCCTAGCACCTAGCACGCTCAT
TACCGTCGGTCCTTGCACTCCCAAAGGCGAGTCTTCGGTTGCGTTTCGTC
CGTGCCAACAGGCTTTGGCTCGTGGGATTAATTAGACTCAATTTTTGCAT
CCAACCCCCCTCCGCGCGTATGTTCCTCCCCGAACGAAAAGATTTGCAGA
GGGAGAATGGCGATGCAGCAGCTCCAGAAGGACAAGCACCAGGTCGTGGA
CCGAGCGAAGAGGGAGGCGCGAGAAGAGATGAACGCAGAGCGGCAGCAGC
AGCAGCAGAAGAAGAAGAAGCAGCAGCCGTCCCAGGGCATGCAGATAAAG
TCCATCGGCCACGGCAGCGGGGGAGCGGGGCCTCATTTCACGAGAGCGTC
GACGGGAGGCGGCATGGGGGCCAACCCCGTCAGGGTCTTCAAGGCCCCCG
GGGGGGGAAGGGCAGGAAAATAGCGGGGCACGCGAGCCAAGCGCGCGTTC
TCTTTCGGCCGGCCTGTTTCTTGGTATCTCTTGATGCCACCACCGCCGAT
TATACTTGAGGATGGCTGGCGCGCGTGGGCTCTGGCTTTTTTGGACGACT
GCTTCTCGGTTACTAGACATGGGCAGGAACAAGGCGCAAACGAGAGACAA
CGCAAGCCTACACTTT
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig100:558615..562480+

>mRNA_Ecto-sp6_S_contig100.759.1 ID=mRNA_Ecto-sp6_S_contig100.759.1|Name=mRNA_Ecto-sp6_S_contig100.759.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=648bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:558615..562480+ (Ectocarpus species6 EcLAC_371)
ATGCGCGACGCACACTACCGCGGTGTGCCAGCGCTGGGAGGACCCATGTC
GAGTACTGATCCCCAACGCATGTTCCCAGACGAGTATGGCAACTTCAACG
TCCCTAACGGCGCATCACTTAGCAAGAAAGTTCTGCTGGAGCGAGTCAAG
CGCTTGAAATCCGAGCTAGCCCTCCTCAAAGATATCAAGGAGGACGGGGA
CGCCAGACTCAAAGCACAAGAGCTTGATTTCGCCAGGAGAAATAAGGAGA
TCCAGGCGCAGAAGGAGGAAAACGAGAGGCAGCTGCAGATGAACGACAAG
GCGCTGAGCGATGCGGCTCTGGGAGTGCGCACGAGGGACCGGCAAATCAT
CAATCTGGGAGACAAGATTTGCAGAGGGAGAATGGCGATGCAGCAGCTCC
AGAAGGACAAGCACCAGGTCGTGGACCGAGCGAAGAGGGAGGCGCGAGAA
GAGATGAACGCAGAGCGGCAGCAGCAGCAGCAGAAGAAGAAGAAGCAGCA
GCCGTCCCAGGGCATGCAGATAAAGTCCATCGGCCACGGCAGCGGGGGAG
CGGGGCCTCATTTCACGAGAGCGTCGACGGGAGGCGGCATGGGGGCCAAC
CCCGTCAGGGTCTTCAAGGCCCCCGGGGGGGGAAGGGCAGGAAAATAG
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