prot_Ecto-sp6_S_contig100.729.1 (polypeptide) Ectocarpus species6 EcLAC_371

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp6_S_contig100.729.1
Unique Name	prot_Ecto-sp6_S_contig100.729.1
Type	polypeptide
Organism	Ectocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Sequence length	324

Homology

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BLAST of mRNA_Ecto-sp6_S_contig100.729.1 vs. uniprot
Match: D7FKE7_ECTSI (RRM Nup35-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKE7_ECTSI)

HSP 1 Score: 468 bits (1203), Expect = 1.130e-163
Identity = 288/318 (90.57%), Postives = 288/318 (90.57%), Query Frame = 0

Query:    8 GDVGYGTQQQGYQTRSRERGRDGPPEGQVVEGDLFGNPKRQSFRSTDPPTGVPPRGAFHDATAGGXXXXXXNAFRNGGXXAGGYGQTPAAAQPSPFARGPMNDSFSAAGGGSAPGXXXXXGGYSNPVQTAQQQQ--HGFGARVGFSSEVALVPVEASGNSRGRNVMDXXXXXXXPTRSLAXXXXXVRDGXXXXXXXXXXXXXXXXXXXXXXXXVDRMGGGDGIGGFNAAPDTQRATWVVVWGVPPGKSNQVLIRFLQFGDVVEQRGLPDSNWLYFKYATRLQAEKALAAGHGSRLTDTVMLGVQRVPDDEVHAGGNLT 323
            GDVGYGTQQQGYQTRSRERGRDGPPEGQVVEGDLFGNPKRQSFRSTDPPTG PPRGAFHDATAGGXXXXXXNAFRNGGXX GG GQTPAAAQPSPFARGPMNDSFSAAGGG    XXXXX  YSNP QTAQQQQ  HGFGARVGFSSEVALVPVEASGNSRGRNVMDXXXXXX PTRSLA     VRDG     XXXXXXXXXXXXXXXXXXXVDRM    GIG FNAAPDTQRATWVVVWGVPPGKSNQVLIRFLQFGDVVEQRG P SNWLYFKYATRLQAEKALAAGHGSRLTDTVMLGVQRVPDDEVHAGGNLT
Sbjct:    7 GDVGYGTQQQGYQTRSRERGRDGPPEGQVVEGDLFGNPKRQSFRSTDPPTGAPPRGAFHDATAGGXXXXXXNAFRNGGXXXGGCGQTPAAAQPSPFARGPMNDSFSAAGGGXXXXXXXXXXXYSNPGQTAQQQQQQHGFGARVGFSSEVALVPVEASGNSRGRNVMDXXXXXXIPTRSLADDPDDVRDGGVLFGXXXXXXXXXXXXXXXXXXXVDRMXXXXGIGSFNAAPDTQRATWVVVWGVPPGKSNQVLIRFLQFGDVVEQRGQPGSNWLYFKYATRLQAEKALAAGHGSRLTDTVMLGVQRVPDDEVHAGGNLT 324

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BLAST of mRNA_Ecto-sp6_S_contig100.729.1 vs. uniprot
Match: A0A6H5KSX2_9PHAE (RRM Nup35-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSX2_9PHAE)

HSP 1 Score: 363 bits (933), Expect = 1.370e-122
Identity = 259/311 (83.28%), Postives = 266/311 (85.53%), Query Frame = 0

Query:    8 GDVGYGTQQQGYQTRSRERGRDGPPEGQVVEGDLFGNPKRQSFRSTDPPTGVPPRGAFHDATAGGXXXXXX-NAFRNGGXXAGGYGQTPAAAQPSPFARGPMNDSFSAAGGGSAPGXXXXXGGYSNPVQTAQQQQ-HGFGARVGFSSEVALVPVEASGNSRGRNVMDXXXXXXXP-TRSLAXXXXXVRDGXXXXXXXXXXXXXXXXXXXXXXXXVDRMGGGDGIGGFNAAPDTQRATWVVVWGVPPGKSNQVLIRFLQFGDVVEQRGLPDSNWLYFKYATRLQAEKALAAGHGSRLTDTVMLGVQRVPDDE 315
            GDVGYGTQQQGYQTRSR RGRDGPPEGQVVEGDLFGNPKRQ+FRSTDPPTGVPPRGA+ DATAGGXXXXXX NAFR+  XX     QTPA+AQPSPFARGPMN S S A       XXXXX GYS+P QTAQQQQ HGFGARVGFSS+VA VPVEASGNSRG+NVMDXXXXXXX  TRSL XXXXX    XXXXXXXXXXXXXXXXXXXXXXXX    GG      FNAAPDTQRATWVVVWGVPPGKSNQVLIRFLQFGDVVEQRG P SNWLY KYATRLQAEKALAAGHGSRLTDTVMLGVQRV DDE
Sbjct:    7 GDVGYGTQQQGYQTRSRGRGRDGPPEGQVVEGDLFGNPKRQNFRSTDPPTGVPPRGAYIDATAGGXXXXXXXNAFRSXXXXXXXXXQTPASAQPSPFARGPMNASSSVAXXXXXXXXXXXXXGYSDPGQTAQQQQQHGFGARVGFSSDVAFVPVEASGNSRGQNVMDXXXXXXXXXTRSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFGG------FNAAPDTQRATWVVVWGVPPGKSNQVLIRFLQFGDVVEQRGQPGSNWLYLKYATRLQAEKALAAGHGSRLTDTVMLGVQRVLDDE 311

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BLAST of mRNA_Ecto-sp6_S_contig100.729.1 vs. uniprot
Match: E9HKL2_DAPPU (Nucleoporin NUP35 (Fragment) n=3 Tax=Daphnia TaxID=6668 RepID=E9HKL2_DAPPU)

HSP 1 Score: 66.6 bits (161), Expect = 1.410e-9
Identity = 33/81 (40.74%), Postives = 50/81 (61.73%), Query Frame = 0

Query:  236 DTQRATWVVVWGVPPGKSNQVLIRFLQFGDVVEQRGLPDSNWLYFKYATRLQAEKALAAGHGSRLTDTVMLGVQRVPDDEV 316
            D+   TWV V+G PP  ++ VL +   +G ++E R     NW++ K+A+RLQA KALA  +G  LTDT+++GV    D  +
Sbjct:    4 DSDAGTWVTVFGFPPTAASYVLTQTAMWGHILEHRIPSQGNWMHLKFASRLQARKALAR-NGRLLTDTLIIGVVPCTDGSI 83

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BLAST of mRNA_Ecto-sp6_S_contig100.729.1 vs. uniprot
Match: A0A0P5DW53_9CRUS (Nucleoporin NUP53 n=2 Tax=Daphnia magna TaxID=35525 RepID=A0A0P5DW53_9CRUS)

HSP 1 Score: 67.4 bits (163), Expect = 4.380e-9
Identity = 34/81 (41.98%), Postives = 50/81 (61.73%), Query Frame = 0

Query:  236 DTQRATWVVVWGVPPGKSNQVLIRFLQFGDVVEQRGLPDSNWLYFKYATRLQAEKALAAGHGSRLTDTVMLGVQRVPDDEV 316
            D+   TWV V+G PP  ++ VL +   +G ++E R     NW++ K+A+RLQA KALA  +G  LTDT+M+GV    D  +
Sbjct:  136 DSDAGTWVTVFGFPPSAASYVLTQTGMWGHIMEHRIPSQGNWMHLKFASRLQARKALAR-NGRLLTDTLMIGVVPCTDGAI 215

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BLAST of mRNA_Ecto-sp6_S_contig100.729.1 vs. uniprot
Match: B7PS80_IXOSC (Nucleoporin NUP35 n=3 Tax=Ixodes TaxID=6944 RepID=B7PS80_IXOSC)

HSP 1 Score: 60.8 bits (146), Expect = 2.630e-7
Identity = 26/69 (37.68%), Postives = 47/69 (68.12%), Query Frame = 0

Query:  241 TWVVVWGVPPGKSNQVLIRFLQFGDVVEQRGLPDSNWLYFKYATRLQAEKALAAGHGSRLTDTVMLGVQ 309
            TWV V+G PP  ++ ++ +F  +G+++E R +P+SNW++  Y ++LQA+KAL+  +G       M+GV+
Sbjct:   75 TWVTVFGFPPSATSYIVQQFSHYGNILEHRVVPESNWVHLHYQSKLQAKKALSK-NGKVFGTNTMVGVK 142

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BLAST of mRNA_Ecto-sp6_S_contig100.729.1 vs. uniprot
Match: UPI001C383A88 (nucleoporin NUP35 isoform X1 n=1 Tax=Ixodes scapularis TaxID=6945 RepID=UPI001C383A88)

HSP 1 Score: 60.8 bits (146), Expect = 5.780e-7
Identity = 26/69 (37.68%), Postives = 47/69 (68.12%), Query Frame = 0

Query:  241 TWVVVWGVPPGKSNQVLIRFLQFGDVVEQRGLPDSNWLYFKYATRLQAEKALAAGHGSRLTDTVMLGVQ 309
            TWV V+G PP  ++ ++ +F  +G+++E R +P+SNW++  Y ++LQA+KAL+  +G       M+GV+
Sbjct:  147 TWVTVFGFPPSATSYIVQQFSHYGNILEHRVVPESNWVHLHYQSKLQAKKALSK-NGKVFGTNTMVGVK 214

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BLAST of mRNA_Ecto-sp6_S_contig100.729.1 vs. uniprot
Match: A0A1V9Z8L5_9STRA (RRM Nup35-type domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z8L5_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 2.840e-6
Identity = 34/77 (44.16%), Postives = 44/77 (57.14%), Query Frame = 0

Query:  242 WVVVWGVPPGKSNQVLIRFLQFGDVVEQRGLPDSNWLYFKYATRLQAEKALAAGHGSRLTDTVMLGVQRVPDDEVHA 318
            W+ V+G        +L  F   GD V+ R     NWLY +Y TRLQAEKALA   GS L+ +VM+GV+R    E+ A
Sbjct:  128 WITVFGFSAVDMETILRHFQSMGDAVQYR-YGRGNWLYVRYRTRLQAEKALAES-GSTLSGSVMIGVKRCLVSEMDA 202

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BLAST of mRNA_Ecto-sp6_S_contig100.729.1 vs. uniprot
Match: A0A7R9UFC1_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UFC1_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 6.630e-6
Identity = 33/74 (44.59%), Postives = 48/74 (64.86%), Query Frame = 0

Query:  236 DTQRATWVVVWGVPPGKSNQVLIRFLQFGDVVEQ-RGLPDSNWLYFKYATRLQAEKALAAGHGSRLTDTVMLGV 308
            D +   WVVV+G  P +S  VL  F +FGD+VE  RG    NWL+ +Y +R+QA+KA+A  +G+ L  T+M+ V
Sbjct:  180 DIRWQDWVVVFGFQPEQSTSVLRYFQRFGDIVEHHRG--KGNWLFIRYRSRMQAQKAVAQ-NGATLDPTLMVAV 250

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BLAST of mRNA_Ecto-sp6_S_contig100.729.1 vs. uniprot
Match: A0A836CNV8_9STRA (RRM Nup35-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNV8_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 7.400e-6
Identity = 30/73 (41.10%), Postives = 47/73 (64.38%), Query Frame = 0

Query:  240 ATWVVVWGVPPGKSNQVLIRFLQFGDVVEQRGLPDSNWLYFKYATRLQAEKALAAGHGSRLTD-TVMLGVQRV 311
            A WV+V+G+P G   +V+  F  +G VVE R +   NW+  +YAT LQA KALA+G+ +R++   +M+G   +
Sbjct:   86 ARWVMVYGMPAGCVAEVVDHFRVYGQVVENR-VGQGNWVLLRYATVLQARKALASGNHARISGGRIMVGTSAI 157

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BLAST of mRNA_Ecto-sp6_S_contig100.729.1 vs. uniprot
Match: A0A1W0ACE0_9STRA (RRM Nup35-type domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0ACE0_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 1.630e-5
Identity = 33/77 (42.86%), Postives = 43/77 (55.84%), Query Frame = 0

Query:  242 WVVVWGVPPGKSNQVLIRFLQFGDVVEQRGLPDSNWLYFKYATRLQAEKALAAGHGSRLTDTVMLGVQRVPDDEVHA 318
            WV V+G        +L  F   GDV + R     NWLY +Y TRLQAEKAL+   G+ L  +VM+GV+R    E+ A
Sbjct:  123 WVTVFGFAAVDMEAILKHFQSMGDVTQYR-YGRGNWLYVRYRTRLQAEKALSES-GATLAGSVMIGVKRCLVSEMDA 197

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp6_S_contig100.729.1 vs. uniprot

BLAST of mRNA_Ecto-sp6_S_contig100.729.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 15


Match Name	E-value	Identity	Description
D7FKE7_ECTSI	1.130e-163	90.57	RRM Nup35-type domain-containing protein n=1 Tax=E...	[more]
A0A6H5KSX2_9PHAE	1.370e-122	83.28	RRM Nup35-type domain-containing protein n=1 Tax=E...	[more]
E9HKL2_DAPPU	1.410e-9	40.74	Nucleoporin NUP35 (Fragment) n=3 Tax=Daphnia TaxID...	[more]
A0A0P5DW53_9CRUS	4.380e-9	41.98	Nucleoporin NUP53 n=2 Tax=Daphnia magna TaxID=3552...	[more]
B7PS80_IXOSC	2.630e-7	37.68	Nucleoporin NUP35 n=3 Tax=Ixodes TaxID=6944 RepID=...	[more]
UPI001C383A88	5.780e-7	37.68	nucleoporin NUP35 isoform X1 n=1 Tax=Ixodes scapul...	[more]
A0A1V9Z8L5_9STRA	2.840e-6	44.16	RRM Nup35-type domain-containing protein n=1 Tax=A...	[more]
A0A7R9UFC1_9STRA	6.630e-6	44.59	Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi...	[more]
A0A836CNV8_9STRA	7.400e-6	41.10	RRM Nup35-type domain-containing protein n=1 Tax=T...	[more]
A0A1W0ACE0_9STRA	1.630e-5	42.86	RRM Nup35-type domain-containing protein n=1 Tax=T...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 236..310 e-value: 2.0E-15 score: 58.5
IPR007846	RNA-recognition motif (RRM) Nup35-type domain	PFAM	PF05172	Nup35_RRM	coord: 238..313 e-value: 4.1E-11 score: 42.7
IPR007846	RNA-recognition motif (RRM) Nup35-type domain	PROSITE	PS51472	RRM_NUP35	coord: 237..318 score: 18.271
IPR017389	Nucleoporin, NUP53	PIRSF	PIRSF038119	NUP53	coord: 90..155 e-value: 970.0 score: -2.7 coord: 229..322 e-value: 1.8E-17 score: 62.2
None	No IPR available	PANTHER	PTHR21527:SF6	NUCLEOPORIN NUP35	coord: 232..318
None	No IPR available	PANTHER	PTHR21527	FAMILY NOT NAMED	coord: 232..318
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 240..315

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp6_S_contig100	contig	Ecto-sp6_S_contig100:327507..330245 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species6 EcLAC_371 OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp6_S_contig100.729.1	mRNA_Ecto-sp6_S_contig100.729.1	Ectocarpus species6 EcLAC_371	mRNA	Ecto-sp6_S_contig100 327507..330245 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp6_S_contig100.729.1 ID=prot_Ecto-sp6_S_contig100.729.1|Name=mRNA_Ecto-sp6_S_contig100.729.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=324bp
MRADTHRGDVGYGTQQQGYQTRSRERGRDGPPEGQVVEGDLFGNPKRQSF
RSTDPPTGVPPRGAFHDATAGGGGGGGGNAFRNGGAGAGGYGQTPAAAQP
SPFARGPMNDSFSAAGGGSAPGPGYGAGGYSNPVQTAQQQQHGFGARVGF
SSEVALVPVEASGNSRGRNVMDDDDDDDIPTRSLADDPDDVRDGGVLFGG
GEGLRSRRGGGGGGGGGGVDRMGGGDGIGGFNAAPDTQRATWVVVWGVPP
GKSNQVLIRFLQFGDVVEQRGLPDSNWLYFKYATRLQAEKALAAGHGSRL
TDTVMLGVQRVPDDEVHAGGNLT*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR007846	RRM_NUP35_dom
IPR017389	Nucleoporin_NUP53
IPR035979	RBD_domain_sf