mRNA_Ecto-sp6_S_contig100.729.1 (mRNA) Ectocarpus species6 EcLAC_371
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig100.729.1 vs. uniprot
Match: D7FKE7_ECTSI (RRM Nup35-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKE7_ECTSI) HSP 1 Score: 468 bits (1203), Expect = 1.130e-163 Identity = 288/318 (90.57%), Postives = 288/318 (90.57%), Query Frame = 1 Query: 22 GDVGYGTQQQGYQTRSRERGRDGPPEGQVVEGDLFGNPKRQSFRSTDPPTGVPPRGAFHDATAGGXXXXXXNAFRNGGXXAGGYGQTPAAAQPSPFARGPMNDSFSAAGGGSAPGXXXXXGGYSNPVQTAQQQQ--HGFGARVGFSSEVALVPVEASGNSRGRNVMDXXXXXXXPTRSLAXXXXXVRDGXXXXXXXXXXXXXXXXXXXXXXXXVDRMGGGDGIGGFNAAPDTQRATWVVVWGVPPGKSNQVLIRFLQFGDVVEQRGLPDSNWLYFKYATRLQAEKALAAGHGSRLTDTVMLGVQRVPDDEVHAGGNLT 969
GDVGYGTQQQGYQTRSRERGRDGPPEGQVVEGDLFGNPKRQSFRSTDPPTG PPRGAFHDATAGGXXXXXXNAFRNGGXX GG GQTPAAAQPSPFARGPMNDSFSAAGGG XXXXX YSNP QTAQQQQ HGFGARVGFSSEVALVPVEASGNSRGRNVMDXXXXXX PTRSLA VRDG XXXXXXXXXXXXXXXXXXXVDRM GIG FNAAPDTQRATWVVVWGVPPGKSNQVLIRFLQFGDVVEQRG P SNWLYFKYATRLQAEKALAAGHGSRLTDTVMLGVQRVPDDEVHAGGNLT
Sbjct: 7 GDVGYGTQQQGYQTRSRERGRDGPPEGQVVEGDLFGNPKRQSFRSTDPPTGAPPRGAFHDATAGGXXXXXXNAFRNGGXXXGGCGQTPAAAQPSPFARGPMNDSFSAAGGGXXXXXXXXXXXYSNPGQTAQQQQQQHGFGARVGFSSEVALVPVEASGNSRGRNVMDXXXXXXIPTRSLADDPDDVRDGGVLFGXXXXXXXXXXXXXXXXXXXVDRMXXXXGIGSFNAAPDTQRATWVVVWGVPPGKSNQVLIRFLQFGDVVEQRGQPGSNWLYFKYATRLQAEKALAAGHGSRLTDTVMLGVQRVPDDEVHAGGNLT 324
BLAST of mRNA_Ecto-sp6_S_contig100.729.1 vs. uniprot
Match: A0A6H5KSX2_9PHAE (RRM Nup35-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSX2_9PHAE) HSP 1 Score: 363 bits (933), Expect = 1.370e-122 Identity = 259/311 (83.28%), Postives = 266/311 (85.53%), Query Frame = 1 Query: 22 GDVGYGTQQQGYQTRSRERGRDGPPEGQVVEGDLFGNPKRQSFRSTDPPTGVPPRGAFHDATAGGXXXXXX-NAFRNGGXXAGGYGQTPAAAQPSPFARGPMNDSFSAAGGGSAPGXXXXXGGYSNPVQTAQQQQ-HGFGARVGFSSEVALVPVEASGNSRGRNVMDXXXXXXXP-TRSLAXXXXXVRDGXXXXXXXXXXXXXXXXXXXXXXXXVDRMGGGDGIGGFNAAPDTQRATWVVVWGVPPGKSNQVLIRFLQFGDVVEQRGLPDSNWLYFKYATRLQAEKALAAGHGSRLTDTVMLGVQRVPDDE 945
GDVGYGTQQQGYQTRSR RGRDGPPEGQVVEGDLFGNPKRQ+FRSTDPPTGVPPRGA+ DATAGGXXXXXX NAFR+ XX QTPA+AQPSPFARGPMN S S A XXXXX GYS+P QTAQQQQ HGFGARVGFSS+VA VPVEASGNSRG+NVMDXXXXXXX TRSL XXXXX XXXXXXXXXXXXXXXXXXXXXXXX GG FNAAPDTQRATWVVVWGVPPGKSNQVLIRFLQFGDVVEQRG P SNWLY KYATRLQAEKALAAGHGSRLTDTVMLGVQRV DDE
Sbjct: 7 GDVGYGTQQQGYQTRSRGRGRDGPPEGQVVEGDLFGNPKRQNFRSTDPPTGVPPRGAYIDATAGGXXXXXXXNAFRSXXXXXXXXXQTPASAQPSPFARGPMNASSSVAXXXXXXXXXXXXXGYSDPGQTAQQQQQHGFGARVGFSSDVAFVPVEASGNSRGQNVMDXXXXXXXXXTRSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFGG------FNAAPDTQRATWVVVWGVPPGKSNQVLIRFLQFGDVVEQRGQPGSNWLYLKYATRLQAEKALAAGHGSRLTDTVMLGVQRVLDDE 311
BLAST of mRNA_Ecto-sp6_S_contig100.729.1 vs. uniprot
Match: E9HKL2_DAPPU (Nucleoporin NUP35 (Fragment) n=3 Tax=Daphnia TaxID=6668 RepID=E9HKL2_DAPPU) HSP 1 Score: 66.6 bits (161), Expect = 1.410e-9 Identity = 33/81 (40.74%), Postives = 50/81 (61.73%), Query Frame = 1 Query: 706 DTQRATWVVVWGVPPGKSNQVLIRFLQFGDVVEQRGLPDSNWLYFKYATRLQAEKALAAGHGSRLTDTVMLGVQRVPDDEV 948
D+ TWV V+G PP ++ VL + +G ++E R NW++ K+A+RLQA KALA +G LTDT+++GV D +
Sbjct: 4 DSDAGTWVTVFGFPPTAASYVLTQTAMWGHILEHRIPSQGNWMHLKFASRLQARKALAR-NGRLLTDTLIIGVVPCTDGSI 83
BLAST of mRNA_Ecto-sp6_S_contig100.729.1 vs. uniprot
Match: A0A0P5DW53_9CRUS (Nucleoporin NUP53 n=2 Tax=Daphnia magna TaxID=35525 RepID=A0A0P5DW53_9CRUS) HSP 1 Score: 67.4 bits (163), Expect = 4.380e-9 Identity = 34/81 (41.98%), Postives = 50/81 (61.73%), Query Frame = 1 Query: 706 DTQRATWVVVWGVPPGKSNQVLIRFLQFGDVVEQRGLPDSNWLYFKYATRLQAEKALAAGHGSRLTDTVMLGVQRVPDDEV 948
D+ TWV V+G PP ++ VL + +G ++E R NW++ K+A+RLQA KALA +G LTDT+M+GV D +
Sbjct: 136 DSDAGTWVTVFGFPPSAASYVLTQTGMWGHIMEHRIPSQGNWMHLKFASRLQARKALAR-NGRLLTDTLMIGVVPCTDGAI 215
BLAST of mRNA_Ecto-sp6_S_contig100.729.1 vs. uniprot
Match: B7PS80_IXOSC (Nucleoporin NUP35 n=3 Tax=Ixodes TaxID=6944 RepID=B7PS80_IXOSC) HSP 1 Score: 60.8 bits (146), Expect = 2.630e-7 Identity = 26/69 (37.68%), Postives = 47/69 (68.12%), Query Frame = 1 Query: 721 TWVVVWGVPPGKSNQVLIRFLQFGDVVEQRGLPDSNWLYFKYATRLQAEKALAAGHGSRLTDTVMLGVQ 927
TWV V+G PP ++ ++ +F +G+++E R +P+SNW++ Y ++LQA+KAL+ +G M+GV+
Sbjct: 75 TWVTVFGFPPSATSYIVQQFSHYGNILEHRVVPESNWVHLHYQSKLQAKKALSK-NGKVFGTNTMVGVK 142
BLAST of mRNA_Ecto-sp6_S_contig100.729.1 vs. uniprot
Match: UPI001C383A88 (nucleoporin NUP35 isoform X1 n=1 Tax=Ixodes scapularis TaxID=6945 RepID=UPI001C383A88) HSP 1 Score: 60.8 bits (146), Expect = 5.780e-7 Identity = 26/69 (37.68%), Postives = 47/69 (68.12%), Query Frame = 1 Query: 721 TWVVVWGVPPGKSNQVLIRFLQFGDVVEQRGLPDSNWLYFKYATRLQAEKALAAGHGSRLTDTVMLGVQ 927
TWV V+G PP ++ ++ +F +G+++E R +P+SNW++ Y ++LQA+KAL+ +G M+GV+
Sbjct: 147 TWVTVFGFPPSATSYIVQQFSHYGNILEHRVVPESNWVHLHYQSKLQAKKALSK-NGKVFGTNTMVGVK 214
BLAST of mRNA_Ecto-sp6_S_contig100.729.1 vs. uniprot
Match: A0A1V9Z8L5_9STRA (RRM Nup35-type domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z8L5_9STRA) HSP 1 Score: 58.5 bits (140), Expect = 2.840e-6 Identity = 34/77 (44.16%), Postives = 44/77 (57.14%), Query Frame = 1 Query: 724 WVVVWGVPPGKSNQVLIRFLQFGDVVEQRGLPDSNWLYFKYATRLQAEKALAAGHGSRLTDTVMLGVQRVPDDEVHA 954
W+ V+G +L F GD V+ R NWLY +Y TRLQAEKALA GS L+ +VM+GV+R E+ A
Sbjct: 128 WITVFGFSAVDMETILRHFQSMGDAVQYR-YGRGNWLYVRYRTRLQAEKALAES-GSTLSGSVMIGVKRCLVSEMDA 202
BLAST of mRNA_Ecto-sp6_S_contig100.729.1 vs. uniprot
Match: A0A7R9UFC1_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UFC1_9STRA) HSP 1 Score: 58.2 bits (139), Expect = 6.630e-6 Identity = 33/74 (44.59%), Postives = 48/74 (64.86%), Query Frame = 1 Query: 706 DTQRATWVVVWGVPPGKSNQVLIRFLQFGDVVEQ-RGLPDSNWLYFKYATRLQAEKALAAGHGSRLTDTVMLGV 924
D + WVVV+G P +S VL F +FGD+VE RG NWL+ +Y +R+QA+KA+A +G+ L T+M+ V
Sbjct: 180 DIRWQDWVVVFGFQPEQSTSVLRYFQRFGDIVEHHRG--KGNWLFIRYRSRMQAQKAVAQ-NGATLDPTLMVAV 250
BLAST of mRNA_Ecto-sp6_S_contig100.729.1 vs. uniprot
Match: A0A836CNV8_9STRA (RRM Nup35-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNV8_9STRA) HSP 1 Score: 57.4 bits (137), Expect = 7.400e-6 Identity = 30/73 (41.10%), Postives = 47/73 (64.38%), Query Frame = 1 Query: 718 ATWVVVWGVPPGKSNQVLIRFLQFGDVVEQRGLPDSNWLYFKYATRLQAEKALAAGHGSRLTD-TVMLGVQRV 933
A WV+V+G+P G +V+ F +G VVE R + NW+ +YAT LQA KALA+G+ +R++ +M+G +
Sbjct: 86 ARWVMVYGMPAGCVAEVVDHFRVYGQVVENR-VGQGNWVLLRYATVLQARKALASGNHARISGGRIMVGTSAI 157
BLAST of mRNA_Ecto-sp6_S_contig100.729.1 vs. uniprot
Match: A0A1W0ACE0_9STRA (RRM Nup35-type domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0ACE0_9STRA) HSP 1 Score: 56.2 bits (134), Expect = 1.630e-5 Identity = 33/77 (42.86%), Postives = 43/77 (55.84%), Query Frame = 1 Query: 724 WVVVWGVPPGKSNQVLIRFLQFGDVVEQRGLPDSNWLYFKYATRLQAEKALAAGHGSRLTDTVMLGVQRVPDDEVHA 954
WV V+G +L F GDV + R NWLY +Y TRLQAEKAL+ G+ L +VM+GV+R E+ A
Sbjct: 123 WVTVFGFAAVDMEAILKHFQSMGDVTQYR-YGRGNWLYVRYRTRLQAEKALSES-GATLAGSVMIGVKRCLVSEMDA 197 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig100.729.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 15 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig100.729.1 >prot_Ecto-sp6_S_contig100.729.1 ID=prot_Ecto-sp6_S_contig100.729.1|Name=mRNA_Ecto-sp6_S_contig100.729.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=324bp MRADTHRGDVGYGTQQQGYQTRSRERGRDGPPEGQVVEGDLFGNPKRQSFback to top mRNA from alignment at Ecto-sp6_S_contig100:327507..330245+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig100.729.1 ID=mRNA_Ecto-sp6_S_contig100.729.1|Name=mRNA_Ecto-sp6_S_contig100.729.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=2739bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:327507..330245+ (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig100:327507..330245+ >mRNA_Ecto-sp6_S_contig100.729.1 ID=mRNA_Ecto-sp6_S_contig100.729.1|Name=mRNA_Ecto-sp6_S_contig100.729.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=972bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:327507..330245+ (Ectocarpus species6 EcLAC_371)back to top |