mRNA_Ecto-sp6_S_contig100.708.1 (mRNA) Ectocarpus species6 EcLAC_371
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig100.708.1 vs. uniprot
Match: D7FKG8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKG8_ECTSI) HSP 1 Score: 1147 bits (2968), Expect = 0.000e+0 Identity = 579/596 (97.15%), Postives = 584/596 (97.99%), Query Frame = 1 Query: 40 MVSDLPPYANSKTTVRYDGDVQDARQVDGKIWFAVDGQAILTREQQTRGISKLRPGTGTTAYTMASAHVIVGGPQPSSSYGADPAGGGTASGLLSPESALLIKAAQISQTFAAVTALPPGIHVMCYVPPSTDDADEKPAAGDAGGKPAATAGDWSALWRDIRFSTGEAEEGKRLAWQAPCLSLLGDATSFLASAAISSLTDSTPRGGWALVPCASSSNLVCELASGGAKGDGGKVAWLHLAEDAQASGTGVAVADSLLLTSDGNQELSYASVSARSLGDAEVEVVSEAHRVLPGGVLSGYDLSVAPPNNALLGNDKSSDEEPDRGRPKNVDEAAVFVDHSTAPVDVVGQRWRGDVAVVGLPGGGLHRHVRVKFDARCTGNACEGLSERGESQDSDTSEWCEVLLAQHVPQGAYIDVDEVKARHDFDVLSSPPIGRRVGVETFEGEPIDVELPSSVSGQHLVNFNLWFDMSRGDRGREGEARSIQADVTLPVHLRYPDPGCERRGEECEGYAWVEVPPPLASIRCGSAGNMGQFSPVLPARPPVGVALRVPRGIAWHRDLVMMGTAGAAALGCLYTIYTLLVVVPTGKARGSDRKSR 1827
MVSDLPPYANSKTTVRYDGDVQDARQVDGKIWFAVDGQAILTREQQTRGISKLRP GTTA+TMASAHVIVGGPQ SSSY ADPAGGGTASGLLSPESALLIKAAQ+SQTFAAVTALPPGIHVMCYVPPSTDDADEKPAAGDAGGKPAATAGDWSALWRDIRFSTGEAEEGKRLAWQAPCLSLLGDATSFLASAAISSLTDSTPRGGWALVPCASSSNLVCELASGGAKGDGGKVAWLHLAEDAQASGTGVAVADSLLLTSDGNQELSYASVSARSLGDAEVEVVSEAHRVLPGGVLSGYDLSVAPPNNAL+GNDKSSD EPDRGRPKNVDEAAVFVDHSTAPVDVVGQRWRGDVAVVGLPGGGLHRHVRVKFDARCTGNACEGLSERGESQDSD SEWCEVLLAQHVPQGAYIDVDEVKARHDFDVLSSPP+GRRVGVETFEG PIDVELPSSVSGQHLVNFNLW DMS DRGREGEARSIQAD+TLPVHLRYPDPGCERRGEECEGYAWVEVPPPLASIRCGSAGNMGQF PVLPARPPVGVALRVPRGIAWHRDLVMMGT GAAALGCLYTIYTLLVVVPTGKARGSDRKSR
Sbjct: 1 MVSDLPPYANSKTTVRYDGDVQDARQVDGKIWFAVDGQAILTREQQTRGISKLRPAPGTTAHTMASAHVIVGGPQLSSSYDADPAGGGTASGLLSPESALLIKAAQVSQTFAAVTALPPGIHVMCYVPPSTDDADEKPAAGDAGGKPAATAGDWSALWRDIRFSTGEAEEGKRLAWQAPCLSLLGDATSFLASAAISSLTDSTPRGGWALVPCASSSNLVCELASGGAKGDGGKVAWLHLAEDAQASGTGVAVADSLLLTSDGNQELSYASVSARSLGDAEVEVVSEAHRVLPGGVLSGYDLSVAPPNNALIGNDKSSDGEPDRGRPKNVDEAAVFVDHSTAPVDVVGQRWRGDVAVVGLPGGGLHRHVRVKFDARCTGNACEGLSERGESQDSDASEWCEVLLAQHVPQGAYIDVDEVKARHDFDVLSSPPVGRRVGVETFEGGPIDVELPSSVSGQHLVNFNLWVDMSERDRGREGEARSIQADLTLPVHLRYPDPGCERRGEECEGYAWVEVPPPLASIRCGSAGNMGQFFPVLPARPPVGVALRVPRGIAWHRDLVMMGTTGAAALGCLYTIYTLLVVVPTGKARGSDRKSR 596
BLAST of mRNA_Ecto-sp6_S_contig100.708.1 vs. uniprot
Match: A0A6H5L0R2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0R2_9PHAE) HSP 1 Score: 820 bits (2117), Expect = 6.230e-294 Identity = 436/588 (74.15%), Postives = 457/588 (77.72%), Query Frame = 1 Query: 40 MVSDLPPYANSKTTVRYDGDVQDARQVDGKIWFAVDGQAILTREQQTRGISKLRPGTGTTAYTMASAHVIVGGPQPSSSYGADPAGGGTASGLLSPESALLIKAAQISQTFAAVTALPPGIHVMCYVPPSTDDADEKPAAGDAGGKPAATAGDWSALWRDIRFSTGEAEEGKRLAWQAPCLSLLGDATSFLASAAISSLTDSTPRGGWALVPCASSSNLVCELASGGAKGDGGKVAWLHLAEDAQASGTGVAVADSLLLTSDGNQELSYASVSARSLGDAEVEVVSEAHRVLPGGVLSGYDLSVAPPNNALLGNDKSSDEEPDRGRPKNVDEAAVFVDHSTAPVDVVGQRWRGDVAVVGLPGGGLHRHVR-------------------------------------------------------------------------VKFDARCTGNACEGLSERGESQDSDTSEWCEVLLAQHVPQGAYIDVDEVKARHDFDVLSSPPIGRRVGVETFEGEPIDVELPSSVSGQHLVNFNLWFDMSRGDRGREGEARSIQADVTLPVHLRYPDPGCERRGEECEGYAWVEV 1584
M SDLPP+ANSKTT+ YDGDVQDARQ+DGKIWFAVDGQAILTREQQTRGIS+LRP +GTTA+TMASAHV+ GG QPSSSY ADPAGGGTASGL SPESALL+KAAQ+SQTFAAVTALPPGIHVMCYVPPSTDDADEKPAA DAGGKP ATAG WSALWRDIR TG+AEE KRLAWQ PCLSLLGDA S L+SAAISSL DS RGGWALVPCASSSNLVCELASGGAKGDGG+VAWLHLAEDAQA TGVAV DSLLLT SLG AEVEV+SEAHR+L GVLSGYDLSVAPPNNALLGN KSSD EPDRGRP VDEAAVFVDHSTAP DVVGQRWRGDVAVVGLPGGGLHRHVR VKF+ARCTG AC+ LSERGESQD D E CEVLLAQHVP+GAYIDVDEVKARHDFDVLSSPPIGRRVGVETF+G PIDVELPSSVSGQHLVNFNLW DMS DRG EGEA SIQAD+TLPVHLRYPDPGC+RRGEECEGYAWV+
Sbjct: 1 MASDLPPHANSKTTLLYDGDVQDARQIDGKIWFAVDGQAILTREQQTRGISQLRPASGTTAHTMASAHVVAGGLQPSSSYDADPAGGGTASGLSSPESALLMKAAQVSQTFAAVTALPPGIHVMCYVPPSTDDADEKPAAVDAGGKPVATAGGWSALWRDIRSGTGQAEEAKRLAWQTPCLSLLGDAASSLSSAAISSLADSASRGGWALVPCASSSNLVCELASGGAKGDGGQVAWLHLAEDAQAPATGVAVTDSLLLT---------------SLGGAEVEVISEAHRILLDGVLSGYDLSVAPPNNALLGNVKSSDGEPDRGRPMKVDEAAVFVDHSTAPADVVGQRWRGDVAVVGLPGGGLHRHVRYSFCRASTIVLSAHHSHDRLSAIMKKDARTGRGCCERAELIGDGKIGTWLPLCGDLQIMSAGGFHKHGSQRVRVKFNARCTGKACDDLSERGESQDGDALELCEVLLAQHVPRGAYIDVDEVKARHDFDVLSSPPIGRRVGVETFQGGPIDVELPSSVSGQHLVNFNLWVDMSERDRGLEGEASSIQADLTLPVHLRYPDPGCDRRGEECEGYAWVKA 573
BLAST of mRNA_Ecto-sp6_S_contig100.708.1 vs. uniprot
Match: UPI00142591A5 (phosphatidylinositol-glycan biosynthesis class X protein-like n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI00142591A5) HSP 1 Score: 72.0 bits (175), Expect = 3.720e-10 Identity = 59/240 (24.58%), Postives = 94/240 (39.17%), Query Frame = 1 Query: 1129 GLHRHVRVKFDARCTGNACEGLSERGESQDSDTSEWCEVLLAQHVPQGAYIDVDEVKARHDFDVLSSPPIGRRVGVETFEGEPIDVELPSSVSGQHLVNFNLWFDMSRGDRGREGEARSIQADVTLPVHLRYPDPGCERRGEECEGYAWVEVPPPLASIRCGSAGNMGQFS-----------------------PVLPARPPVGVALRVPRGIAWHRDLVMMGTAGAAALGCLYTIYTLL 1779
G HR++ K + + SQD + S C +L+ H+P GA++D+D+++ R +F G + E IDVE P +S H + +S + + + + P+HLRY P +A V + PP +RC S + G+ S +L V L+VP G +V++GT +G LY IY LL
Sbjct: 72 GFHRYLETKVQLQLS------------SQDFENSLTCHILMIDHLPSGAFVDLDQLENRLEFG-----------GPQVLALEHIDVEKPQYLSSGHSI-------LSFQTKVFPPTSSNFNIETAFPIHLRYHRPS----NHPTVNFANVTIHPPDMMVRCDS--DHGELSHQKLDTRIILGLCTAMKKNLCHWQLLQRNESASVILQVPVGQHSDTVVVLLGTVACVFVGVLYLIYILL 275
BLAST of mRNA_Ecto-sp6_S_contig100.708.1 vs. uniprot
Match: A0A7S2XXY9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XXY9_9STRA) HSP 1 Score: 60.5 bits (145), Expect = 3.710e-6 Identity = 57/195 (29.23%), Postives = 84/195 (43.08%), Query Frame = 1 Query: 1237 CEVLLAQHVPQGAYIDVDEVKARHDFDV-----LSSPPIGRRVGVETFEGEPIDVELPSSVSGQHLVNFNLWFDMSRGDRGREGEARSIQADVTLPVHLRYPDPGCERRGEECEGYAWVE--VPPPLASIRCGSAGN---MGQFS--PV--LPARPPVGVALRVPRGIAWHRDLVMMGTAGAAALGCLYTIYTLL 1779
C +LL +P+GAY+D++E+K H+++V + +PP E ID+E P++ L + + G E S + LPVHLRYP P EG VE + PP+ I GN + Q S PV LP + V L VP G V+ T + +GC+ L+
Sbjct: 157 CSILLLLDIPKGAYVDLEEMKHSHEYNVKGQVKVMAPP------------EVIDIEAPATSKKARHHTIALKYVTHALNSGLEFFVASA---IRLPVHLRYPAP--------TEGGRPVETLLHPPVVYISTLDYGNDRALPQVSSHPVAQLPFKKQPPVILLVPSGQKELTTFVITITVAVSVIGCIVLFVYLI 328 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig100.708.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig100.708.1 >prot_Ecto-sp6_S_contig100.708.1 ID=prot_Ecto-sp6_S_contig100.708.1|Name=mRNA_Ecto-sp6_S_contig100.708.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=610bp KSEVALDHSVHSTMVSDLPPYANSKTTVRYDGDVQDARQVDGKIWFAVDGback to top mRNA from alignment at Ecto-sp6_S_contig100:185115..188658- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig100.708.1 ID=mRNA_Ecto-sp6_S_contig100.708.1|Name=mRNA_Ecto-sp6_S_contig100.708.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=3544bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:185115..188658- (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig100:185115..188658- >mRNA_Ecto-sp6_S_contig100.708.1 ID=mRNA_Ecto-sp6_S_contig100.708.1|Name=mRNA_Ecto-sp6_S_contig100.708.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1830bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:185115..188658- (Ectocarpus species6 EcLAC_371)back to top |