prot_Ecto-sp6_S_contig100.707.1 (polypeptide) Ectocarpus species6 EcLAC_371

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp6_S_contig100.707.1
Unique Nameprot_Ecto-sp6_S_contig100.707.1
Typepolypeptide
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Sequence length107
Homology
BLAST of mRNA_Ecto-sp6_S_contig100.707.1 vs. uniprot
Match: D7FKG9_ECTSI (U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKG9_ECTSI)

HSP 1 Score: 164 bits (414), Expect = 2.490e-50
Identity = 82/85 (96.47%), Postives = 82/85 (96.47%), Query Frame = 0
Query:   25 GNLKGYDHTINLVLEGCKERIYSQSRGVEQARETGTYSSMV---QLGLYICRGDNIAVIGEVDEVEDASKDLSRIRAEPLKPVTH 106
            GNLKGYDHTINLVLEGCKERIYSQSRGVEQARETGTYSSMV   QLGLYICRGDNIAVIGEVDEVEDASKDLSRIRAEPLKPVTH
Sbjct:   35 GNLKGYDHTINLVLEGCKERIYSQSRGVEQARETGTYSSMVVQVQLGLYICRGDNIAVIGEVDEVEDASKDLSRIRAEPLKPVTH 119          
BLAST of mRNA_Ecto-sp6_S_contig100.707.1 vs. uniprot
Match: A0A835ZJ72_9STRA (U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJ72_9STRA)

HSP 1 Score: 124 bits (311), Expect = 6.070e-35
Identity = 59/106 (55.66%), Postives = 76/106 (71.70%), Query Frame = 0
Query:    1 MAASIQELQGKLVSVITGDGRQILGNLKGYDHTINLVLEGCKERIYSQSRGVEQARETGTYSSMVQLGLYICRGDNIAVIGEVDEVEDASKDLSRIRAEPLKPVTH 106
            MA ++ ELQGK VS+IT DGR I+GN +G+DHTIN++L+ C ER+YS +  VE          +V LGLYI RGDNIAVIGE+DE  D  +DLS +RA P+KP+ H
Sbjct:    1 MATTLSELQGKPVSIITNDGRNIVGNFRGHDHTINVILDSCHERVYSTTAAVE----------VVPLGLYIVRGDNIAVIGELDEAADTERDLSSLRAVPIKPLAH 96          
BLAST of mRNA_Ecto-sp6_S_contig100.707.1 vs. uniprot
Match: A0A5S6R3V4_TRIMR (U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=Trichuris muris TaxID=70415 RepID=A0A5S6R3V4_TRIMR)

HSP 1 Score: 119 bits (298), Expect = 5.950e-33
Identity = 60/104 (57.69%), Postives = 75/104 (72.12%), Query Frame = 0
Query:    1 MAASIQELQGKLVSVITGDGRQILGNLKGYDHTINLVLEGCKERIYSQSRGVEQARETGTYSSMVQLGLYICRGDNIAVIGEVDEVEDASKDLSRIRAEPLKPV 104
            MAA I + + KLVSVITGDGR ILGNLKG+D TINLVL+   ER+YS+ +G+E+          VQLGLYI RGDN+A+IGE+DE  D   DL+  RA+PL P+
Sbjct:    1 MAAGIDQYKDKLVSVITGDGRHILGNLKGFDQTINLVLDEACERVYSKEQGIEE----------VQLGLYIIRGDNVAIIGEMDEEMDRRLDLTNTRADPLMPI 94          
BLAST of mRNA_Ecto-sp6_S_contig100.707.1 vs. uniprot
Match: A0A7I8VGN1_9ANNE (U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=Dimorphilus gyrociliatus TaxID=2664684 RepID=A0A7I8VGN1_9ANNE)

HSP 1 Score: 116 bits (290), Expect = 9.550e-32
Identity = 58/106 (54.72%), Postives = 75/106 (70.75%), Query Frame = 0
Query:    1 MAASIQELQGKLVSVITGDGRQILGNLKGYDHTINLVLEGCKERIYSQSRGVEQARETGTYSSMVQLGLYICRGDNIAVIGEVDEVEDASKDLSRIRAEPLKPVTH 106
            M+ S+  L G++VSV+T DGR I+G LKGYD TIN++LE   ER++S + GVEQ          V LGLYI RGDN+AVIGE+DE  D S DLS+I A+PL P++H
Sbjct:    1 MSGSLDTLVGRVVSVLTNDGRLIVGMLKGYDQTINIILEDSHERVFSATSGVEQ----------VALGLYIVRGDNVAVIGEIDEEHDKSIDLSKICADPLNPISH 96          
BLAST of mRNA_Ecto-sp6_S_contig100.707.1 vs. uniprot
Match: A0A6P6YHQ5_DERPT (U6 snRNA-associated Sm-like protein LSm8 n=2 Tax=Pyroglyphidae TaxID=6952 RepID=A0A6P6YHQ5_DERPT)

HSP 1 Score: 115 bits (288), Expect = 1.920e-31
Identity = 59/106 (55.66%), Postives = 73/106 (68.87%), Query Frame = 0
Query:    1 MAASIQELQGKLVSVITGDGRQILGNLKGYDHTINLVLEGCKERIYSQSRGVEQARETGTYSSMVQLGLYICRGDNIAVIGEVDEVEDASKDLSRIRAEPLKPVTH 106
            MA +++   G+ VSVIT DGRQI+G LKG+D TIN+++E C ER+YS S GVEQ          V LGLYI RGDN+AV+GE+DE  D   + S IRAEPL PV H
Sbjct:    1 MANNLESYVGRTVSVITVDGRQIVGTLKGFDQTINIIMEECHERVYSVSAGVEQ----------VFLGLYIIRGDNVAVVGEIDEELDKKVNYSIIRAEPLNPVVH 96          
BLAST of mRNA_Ecto-sp6_S_contig100.707.1 vs. uniprot
Match: A0A8B7Z2R1_ACAPL (U6 snRNA-associated Sm-like protein LSm8 n=2 Tax=Asteroidea TaxID=7588 RepID=A0A8B7Z2R1_ACAPL)

HSP 1 Score: 114 bits (286), Expect = 3.880e-31
Identity = 57/106 (53.77%), Postives = 73/106 (68.87%), Query Frame = 0
Query:    1 MAASIQELQGKLVSVITGDGRQILGNLKGYDHTINLVLEGCKERIYSQSRGVEQARETGTYSSMVQLGLYICRGDNIAVIGEVDEVEDASKDLSRIRAEPLKPVTH 106
            MA+ ++      VSVIT DGRQI+G LKG+D TINL+L+   ER+Y+ + GVEQ          V LGLYI RGDNIA+IGE+DE  D++ DLS ++AEPL PV H
Sbjct:    1 MASGLESYINHTVSVITNDGRQIVGTLKGFDQTINLILDESHERVYNSASGVEQ----------VVLGLYIIRGDNIAIIGEIDEETDSALDLSNVKAEPLNPVVH 96          
BLAST of mRNA_Ecto-sp6_S_contig100.707.1 vs. uniprot
Match: UPI0014259F6A (U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI0014259F6A)

HSP 1 Score: 114 bits (286), Expect = 3.880e-31
Identity = 58/106 (54.72%), Postives = 73/106 (68.87%), Query Frame = 0
Query:    1 MAASIQELQGKLVSVITGDGRQILGNLKGYDHTINLVLEGCKERIYSQSRGVEQARETGTYSSMVQLGLYICRGDNIAVIGEVDEVEDASKDLSRIRAEPLKPVTH 106
            MA +I+      VSVIT DGR I+G LKG+D T+NL+L+   ER++S ++GVEQ          V LGLYI RGDNIAVIGE+D+  D+S D+S IRAEPL PV H
Sbjct:    1 MATAIESYVNHTVSVITNDGRVIVGTLKGFDQTVNLILDESHERVFSSAQGVEQ----------VLLGLYIIRGDNIAVIGEIDDETDSSMDMSNIRAEPLNPVVH 96          
BLAST of mRNA_Ecto-sp6_S_contig100.707.1 vs. uniprot
Match: H2XL05_CIOIN (U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=Ciona intestinalis TaxID=7719 RepID=H2XL05_CIOIN)

HSP 1 Score: 114 bits (284), Expect = 7.820e-31
Identity = 53/106 (50.00%), Postives = 74/106 (69.81%), Query Frame = 0
Query:    1 MAASIQELQGKLVSVITGDGRQILGNLKGYDHTINLVLEGCKERIYSQSRGVEQARETGTYSSMVQLGLYICRGDNIAVIGEVDEVEDASKDLSRIRAEPLKPVTH 106
            MA++++ L  ++VS++T DGR I+G LKG+D T+NL+L+   ER++S S GVEQ          V LGLYI RGDN+AV+GEVD+  DA+ DL  ++A PL PV H
Sbjct:    1 MASALEPLVNRIVSIVTADGRMIVGTLKGFDQTVNLILDESHERVFSSSHGVEQ----------VMLGLYIIRGDNVAVVGEVDDTTDAALDLENMKAAPLNPVLH 96          
BLAST of mRNA_Ecto-sp6_S_contig100.707.1 vs. uniprot
Match: UPI0006B0C9FC (U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=Limulus polyphemus TaxID=6850 RepID=UPI0006B0C9FC)

HSP 1 Score: 114 bits (284), Expect = 7.820e-31
Identity = 60/106 (56.60%), Postives = 71/106 (66.98%), Query Frame = 0
Query:    1 MAASIQELQGKLVSVITGDGRQILGNLKGYDHTINLVLEGCKERIYSQSRGVEQARETGTYSSMVQLGLYICRGDNIAVIGEVDEVEDASKDLSRIRAEPLKPVTH 106
            MAAS++      VSVIT DGR I+G LKG+D TINL+L+   ER+YS S GVEQ          V LGLYI RGDN+AVIGE+D+  D   DLS I+AEPL PV H
Sbjct:    1 MAASLESYVNHTVSVITADGRNIVGTLKGFDQTINLILDESHERVYSSSHGVEQ----------VVLGLYIIRGDNVAVIGELDDDLDERLDLSSIKAEPLNPVVH 96          
BLAST of mRNA_Ecto-sp6_S_contig100.707.1 vs. uniprot
Match: A0A7R9Y9D5_9STRA (U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9Y9D5_9STRA)

HSP 1 Score: 114 bits (284), Expect = 1.080e-30
Identity = 56/106 (52.83%), Postives = 71/106 (66.98%), Query Frame = 0
Query:    1 MAASIQELQGKLVSVITGDGRQILGNLKGYDHTINLVLEGCKERIYSQSRGVEQARETGTYSSMVQLGLYICRGDNIAVIGEVDEVEDASKDLSRIRAEPLKPVTH 106
            MA ++Q+     V +IT DGR I+GNL+GYD T NL+LE C ERI++   GVE+          V LGLYI RGDN+AVIGE+DE    + DLS IRA+PLKP+ H
Sbjct:   12 MAGALQDWLNHAVCIITNDGRNIVGNLRGYDQTTNLILENCHERIFAPDEGVEE----------VPLGLYIIRGDNVAVIGELDEAMSQALDLSAIRAQPLKPLVH 107          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig100.707.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FKG9_ECTSI2.490e-5096.47U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=E... [more]
A0A835ZJ72_9STRA6.070e-3555.66U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=T... [more]
A0A5S6R3V4_TRIMR5.950e-3357.69U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=T... [more]
A0A7I8VGN1_9ANNE9.550e-3254.72U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=D... [more]
A0A6P6YHQ5_DERPT1.920e-3155.66U6 snRNA-associated Sm-like protein LSm8 n=2 Tax=P... [more]
A0A8B7Z2R1_ACAPL3.880e-3153.77U6 snRNA-associated Sm-like protein LSm8 n=2 Tax=A... [more]
UPI0014259F6A3.880e-3154.72U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=A... [more]
H2XL05_CIOIN7.820e-3150.00U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=C... [more]
UPI0006B0C9FC7.820e-3156.60U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=L... [more]
A0A7R9Y9D5_9STRA1.080e-3052.83U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=P... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 3..82
e-value: 2.9E-16
score: 70.1
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 5..81
e-value: 2.2E-16
score: 59.3
NoneNo IPR availableGENE3D2.30.30.100coord: 2..105
e-value: 3.7E-21
score: 77.1
NoneNo IPR availablePANTHERPTHR15588:SF9U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM8coord: 13..106
NoneNo IPR availablePANTHERPTHR15588LSM1coord: 13..106
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 7..87

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig100contigEcto-sp6_S_contig100:182783..184407 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig100.707.1mRNA_Ecto-sp6_S_contig100.707.1Ectocarpus species6 EcLAC_371mRNAEcto-sp6_S_contig100 182783..184407 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp6_S_contig100.707.1 ID=prot_Ecto-sp6_S_contig100.707.1|Name=mRNA_Ecto-sp6_S_contig100.707.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=107bp
MAASIQELQGKLVSVITGDGRQILGNLKGYDHTINLVLEGCKERIYSQSR
GVEQARETGTYSSMVQLGLYICRGDNIAVIGEVDEVEDASKDLSRIRAEP
LKPVTH*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR010920LSM_dom_sf