mRNA_Ecto-sp6_S_contig100.707.1 (mRNA) Ectocarpus species6 EcLAC_371
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig100.707.1 vs. uniprot
Match: D7FKG9_ECTSI (U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKG9_ECTSI) HSP 1 Score: 164 bits (414), Expect = 2.490e-50 Identity = 82/85 (96.47%), Postives = 82/85 (96.47%), Query Frame = 1 Query: 73 GNLKGYDHTINLVLEGCKERIYSQSRGVEQARETGTYSSMV---QLGLYICRGDNIAVIGEVDEVEDASKDLSRIRAEPLKPVTH 318
GNLKGYDHTINLVLEGCKERIYSQSRGVEQARETGTYSSMV QLGLYICRGDNIAVIGEVDEVEDASKDLSRIRAEPLKPVTH
Sbjct: 35 GNLKGYDHTINLVLEGCKERIYSQSRGVEQARETGTYSSMVVQVQLGLYICRGDNIAVIGEVDEVEDASKDLSRIRAEPLKPVTH 119
BLAST of mRNA_Ecto-sp6_S_contig100.707.1 vs. uniprot
Match: A0A835ZJ72_9STRA (U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJ72_9STRA) HSP 1 Score: 124 bits (311), Expect = 6.070e-35 Identity = 59/106 (55.66%), Postives = 76/106 (71.70%), Query Frame = 1 Query: 1 MAASIQELQGKLVSVITGDGRQILGNLKGYDHTINLVLEGCKERIYSQSRGVEQARETGTYSSMVQLGLYICRGDNIAVIGEVDEVEDASKDLSRIRAEPLKPVTH 318
MA ++ ELQGK VS+IT DGR I+GN +G+DHTIN++L+ C ER+YS + VE +V LGLYI RGDNIAVIGE+DE D +DLS +RA P+KP+ H
Sbjct: 1 MATTLSELQGKPVSIITNDGRNIVGNFRGHDHTINVILDSCHERVYSTTAAVE----------VVPLGLYIVRGDNIAVIGELDEAADTERDLSSLRAVPIKPLAH 96
BLAST of mRNA_Ecto-sp6_S_contig100.707.1 vs. uniprot
Match: A0A5S6R3V4_TRIMR (U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=Trichuris muris TaxID=70415 RepID=A0A5S6R3V4_TRIMR) HSP 1 Score: 119 bits (298), Expect = 5.950e-33 Identity = 60/104 (57.69%), Postives = 75/104 (72.12%), Query Frame = 1 Query: 1 MAASIQELQGKLVSVITGDGRQILGNLKGYDHTINLVLEGCKERIYSQSRGVEQARETGTYSSMVQLGLYICRGDNIAVIGEVDEVEDASKDLSRIRAEPLKPV 312
MAA I + + KLVSVITGDGR ILGNLKG+D TINLVL+ ER+YS+ +G+E+ VQLGLYI RGDN+A+IGE+DE D DL+ RA+PL P+
Sbjct: 1 MAAGIDQYKDKLVSVITGDGRHILGNLKGFDQTINLVLDEACERVYSKEQGIEE----------VQLGLYIIRGDNVAIIGEMDEEMDRRLDLTNTRADPLMPI 94
BLAST of mRNA_Ecto-sp6_S_contig100.707.1 vs. uniprot
Match: A0A7I8VGN1_9ANNE (U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=Dimorphilus gyrociliatus TaxID=2664684 RepID=A0A7I8VGN1_9ANNE) HSP 1 Score: 116 bits (290), Expect = 9.550e-32 Identity = 58/106 (54.72%), Postives = 75/106 (70.75%), Query Frame = 1 Query: 1 MAASIQELQGKLVSVITGDGRQILGNLKGYDHTINLVLEGCKERIYSQSRGVEQARETGTYSSMVQLGLYICRGDNIAVIGEVDEVEDASKDLSRIRAEPLKPVTH 318
M+ S+ L G++VSV+T DGR I+G LKGYD TIN++LE ER++S + GVEQ V LGLYI RGDN+AVIGE+DE D S DLS+I A+PL P++H
Sbjct: 1 MSGSLDTLVGRVVSVLTNDGRLIVGMLKGYDQTINIILEDSHERVFSATSGVEQ----------VALGLYIVRGDNVAVIGEIDEEHDKSIDLSKICADPLNPISH 96
BLAST of mRNA_Ecto-sp6_S_contig100.707.1 vs. uniprot
Match: A0A6P6YHQ5_DERPT (U6 snRNA-associated Sm-like protein LSm8 n=2 Tax=Pyroglyphidae TaxID=6952 RepID=A0A6P6YHQ5_DERPT) HSP 1 Score: 115 bits (288), Expect = 1.920e-31 Identity = 59/106 (55.66%), Postives = 73/106 (68.87%), Query Frame = 1 Query: 1 MAASIQELQGKLVSVITGDGRQILGNLKGYDHTINLVLEGCKERIYSQSRGVEQARETGTYSSMVQLGLYICRGDNIAVIGEVDEVEDASKDLSRIRAEPLKPVTH 318
MA +++ G+ VSVIT DGRQI+G LKG+D TIN+++E C ER+YS S GVEQ V LGLYI RGDN+AV+GE+DE D + S IRAEPL PV H
Sbjct: 1 MANNLESYVGRTVSVITVDGRQIVGTLKGFDQTINIIMEECHERVYSVSAGVEQ----------VFLGLYIIRGDNVAVVGEIDEELDKKVNYSIIRAEPLNPVVH 96
BLAST of mRNA_Ecto-sp6_S_contig100.707.1 vs. uniprot
Match: A0A8B7Z2R1_ACAPL (U6 snRNA-associated Sm-like protein LSm8 n=2 Tax=Asteroidea TaxID=7588 RepID=A0A8B7Z2R1_ACAPL) HSP 1 Score: 114 bits (286), Expect = 3.880e-31 Identity = 57/106 (53.77%), Postives = 73/106 (68.87%), Query Frame = 1 Query: 1 MAASIQELQGKLVSVITGDGRQILGNLKGYDHTINLVLEGCKERIYSQSRGVEQARETGTYSSMVQLGLYICRGDNIAVIGEVDEVEDASKDLSRIRAEPLKPVTH 318
MA+ ++ VSVIT DGRQI+G LKG+D TINL+L+ ER+Y+ + GVEQ V LGLYI RGDNIA+IGE+DE D++ DLS ++AEPL PV H
Sbjct: 1 MASGLESYINHTVSVITNDGRQIVGTLKGFDQTINLILDESHERVYNSASGVEQ----------VVLGLYIIRGDNIAIIGEIDEETDSALDLSNVKAEPLNPVVH 96
BLAST of mRNA_Ecto-sp6_S_contig100.707.1 vs. uniprot
Match: UPI0014259F6A (U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI0014259F6A) HSP 1 Score: 114 bits (286), Expect = 3.880e-31 Identity = 58/106 (54.72%), Postives = 73/106 (68.87%), Query Frame = 1 Query: 1 MAASIQELQGKLVSVITGDGRQILGNLKGYDHTINLVLEGCKERIYSQSRGVEQARETGTYSSMVQLGLYICRGDNIAVIGEVDEVEDASKDLSRIRAEPLKPVTH 318
MA +I+ VSVIT DGR I+G LKG+D T+NL+L+ ER++S ++GVEQ V LGLYI RGDNIAVIGE+D+ D+S D+S IRAEPL PV H
Sbjct: 1 MATAIESYVNHTVSVITNDGRVIVGTLKGFDQTVNLILDESHERVFSSAQGVEQ----------VLLGLYIIRGDNIAVIGEIDDETDSSMDMSNIRAEPLNPVVH 96
BLAST of mRNA_Ecto-sp6_S_contig100.707.1 vs. uniprot
Match: H2XL05_CIOIN (U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=Ciona intestinalis TaxID=7719 RepID=H2XL05_CIOIN) HSP 1 Score: 114 bits (284), Expect = 7.820e-31 Identity = 53/106 (50.00%), Postives = 74/106 (69.81%), Query Frame = 1 Query: 1 MAASIQELQGKLVSVITGDGRQILGNLKGYDHTINLVLEGCKERIYSQSRGVEQARETGTYSSMVQLGLYICRGDNIAVIGEVDEVEDASKDLSRIRAEPLKPVTH 318
MA++++ L ++VS++T DGR I+G LKG+D T+NL+L+ ER++S S GVEQ V LGLYI RGDN+AV+GEVD+ DA+ DL ++A PL PV H
Sbjct: 1 MASALEPLVNRIVSIVTADGRMIVGTLKGFDQTVNLILDESHERVFSSSHGVEQ----------VMLGLYIIRGDNVAVVGEVDDTTDAALDLENMKAAPLNPVLH 96
BLAST of mRNA_Ecto-sp6_S_contig100.707.1 vs. uniprot
Match: UPI0006B0C9FC (U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=Limulus polyphemus TaxID=6850 RepID=UPI0006B0C9FC) HSP 1 Score: 114 bits (284), Expect = 7.820e-31 Identity = 60/106 (56.60%), Postives = 71/106 (66.98%), Query Frame = 1 Query: 1 MAASIQELQGKLVSVITGDGRQILGNLKGYDHTINLVLEGCKERIYSQSRGVEQARETGTYSSMVQLGLYICRGDNIAVIGEVDEVEDASKDLSRIRAEPLKPVTH 318
MAAS++ VSVIT DGR I+G LKG+D TINL+L+ ER+YS S GVEQ V LGLYI RGDN+AVIGE+D+ D DLS I+AEPL PV H
Sbjct: 1 MAASLESYVNHTVSVITADGRNIVGTLKGFDQTINLILDESHERVYSSSHGVEQ----------VVLGLYIIRGDNVAVIGELDDDLDERLDLSSIKAEPLNPVVH 96
BLAST of mRNA_Ecto-sp6_S_contig100.707.1 vs. uniprot
Match: A0A7R9Y9D5_9STRA (U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9Y9D5_9STRA) HSP 1 Score: 114 bits (284), Expect = 1.080e-30 Identity = 56/106 (52.83%), Postives = 71/106 (66.98%), Query Frame = 1 Query: 1 MAASIQELQGKLVSVITGDGRQILGNLKGYDHTINLVLEGCKERIYSQSRGVEQARETGTYSSMVQLGLYICRGDNIAVIGEVDEVEDASKDLSRIRAEPLKPVTH 318
MA ++Q+ V +IT DGR I+GNL+GYD T NL+LE C ERI++ GVE+ V LGLYI RGDN+AVIGE+DE + DLS IRA+PLKP+ H
Sbjct: 12 MAGALQDWLNHAVCIITNDGRNIVGNLRGYDQTTNLILENCHERIFAPDEGVEE----------VPLGLYIIRGDNVAVIGELDEAMSQALDLSAIRAQPLKPLVH 107 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig100.707.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig100.707.1 >prot_Ecto-sp6_S_contig100.707.1 ID=prot_Ecto-sp6_S_contig100.707.1|Name=mRNA_Ecto-sp6_S_contig100.707.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=107bp MAASIQELQGKLVSVITGDGRQILGNLKGYDHTINLVLEGCKERIYSQSRback to top mRNA from alignment at Ecto-sp6_S_contig100:182783..184407+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig100.707.1 ID=mRNA_Ecto-sp6_S_contig100.707.1|Name=mRNA_Ecto-sp6_S_contig100.707.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=1625bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:182783..184407+ (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig100:182783..184407+ >mRNA_Ecto-sp6_S_contig100.707.1 ID=mRNA_Ecto-sp6_S_contig100.707.1|Name=mRNA_Ecto-sp6_S_contig100.707.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=321bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:182783..184407+ (Ectocarpus species6 EcLAC_371)back to top |