mRNA_Ecto-sp6_S_contig100.686.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig100.686.1
Unique NamemRNA_Ecto-sp6_S_contig100.686.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig100.686.1 vs. uniprot
Match: D7FKI6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKI6_ECTSI)

HSP 1 Score: 167 bits (423), Expect = 1.800e-52
Identity = 85/87 (97.70%), Postives = 85/87 (97.70%), Query Frame = 1 
Query:    1 MMPSMINLLVLLAAVLQMMGAAAEDFEVSTGVGSIRAQDRDPFKEGYFNMIISCFALMFFFIGCMFSVRICLGNKRGNDSHSFFLVA 261
            MMPSMINLLVLLAAVL MMGAAAEDFEVSTGVGSIRAQDRDPFKEGYFNMIISCFALMFFFIGCMFSVRICLG KRGNDSHSFFLVA
Sbjct:    1 MMPSMINLLVLLAAVLHMMGAAAEDFEVSTGVGSIRAQDRDPFKEGYFNMIISCFALMFFFIGCMFSVRICLGKKRGNDSHSFFLVA 87
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig100.686.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FKI6_ECTSI1.800e-5297.70Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig100contigEcto-sp6_S_contig100:60104..60367 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size264
Hectar predicted targeting categorysignal peptide
Exons1
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-12_001930.1
Cds size264
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348720.3637733-CDS-Ecto-sp6_S_contig100:60103..603671682348720.3637733-CDS-Ecto-sp6_S_contig100:60103..60367Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig100 60104..60367 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig100.686.1prot_Ecto-sp6_S_contig100.686.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig100 60104..60367 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig100.686.1

>prot_Ecto-sp6_S_contig100.686.1 ID=prot_Ecto-sp6_S_contig100.686.1|Name=mRNA_Ecto-sp6_S_contig100.686.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=88bp
MMPSMINLLVLLAAVLQMMGAAAEDFEVSTGVGSIRAQDRDPFKEGYFNM
IISCFALMFFFIGCMFSVRICLGNKRGNDSHSFFLVA*
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mRNA from alignment at Ecto-sp6_S_contig100:60104..60367+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig100.686.1 ID=mRNA_Ecto-sp6_S_contig100.686.1|Name=mRNA_Ecto-sp6_S_contig100.686.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=264bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:60104..60367+ (Ectocarpus species6 EcLAC_371)
ATGATGCCCTCGATGATCAACCTCTTGGTGTTGTTGGCGGCGGTGCTTCA
AATGATGGGGGCGGCAGCAGAAGACTTCGAGGTTAGCACCGGAGTGGGCT
CGATCCGGGCGCAGGACCGCGACCCCTTCAAGGAGGGCTACTTCAACATG
ATCATCTCCTGCTTCGCCCTCATGTTCTTTTTCATCGGTTGCATGTTCAG
CGTCCGCATCTGCTTGGGCAATAAGCGCGGGAACGACTCCCACTCGTTCT
TCTTGGTCGCTTAA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig100:60104..60367+

>mRNA_Ecto-sp6_S_contig100.686.1 ID=mRNA_Ecto-sp6_S_contig100.686.1|Name=mRNA_Ecto-sp6_S_contig100.686.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=264bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:60104..60367+ (Ectocarpus species6 EcLAC_371)
ATGATGCCCTCGATGATCAACCTCTTGGTGTTGTTGGCGGCGGTGCTTCA
AATGATGGGGGCGGCAGCAGAAGACTTCGAGGTTAGCACCGGAGTGGGCT
CGATCCGGGCGCAGGACCGCGACCCCTTCAAGGAGGGCTACTTCAACATG
ATCATCTCCTGCTTCGCCCTCATGTTCTTTTTCATCGGTTGCATGTTCAG
CGTCCGCATCTGCTTGGGCAATAAGCGCGGGAACGACTCCCACTCGTTCT
TCTTGGTCGCTTAA
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