prot_Ecto-sp6_S_contig9.18233.1 (polypeptide) Ectocarpus species6 EcLAC_371

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp6_S_contig9.18233.1
Unique Nameprot_Ecto-sp6_S_contig9.18233.1
Typepolypeptide
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Sequence length142
Homology
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BLAST of mRNA_Ecto-sp6_S_contig9.18233.1 vs. uniprot
Match: D7FVF7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVF7_ECTSI)

HSP 1 Score: 192 bits (487), Expect = 3.470e-60
Identity = 98/101 (97.03%), Postives = 99/101 (98.02%), Query Frame = 0 
Query:   37 ATLTVGGWLAFLWTEFKLADKRVYTMGGVTTAAIATALAVTTPGQARRLQGIFFVFNLGVVVCMLCVPVNYAANAVSALSLVKGLLGGKGWGF-MKGEFFK 136
            ATLTVGGWLAFLWTEFKLADKRVYTMGGVTTAAIATALAVTTPGQARRLQGIFFVFNLGVVVCMLCVPVNYAANAVSALSLVKGLLG KGWGF +KGEFFK
Sbjct:   53 ATLTVGGWLAFLWTEFKLADKRVYTMGGVTTAAIATALAVTTPGQARRLQGIFFVFNLGVVVCMLCVPVNYAANAVSALSLVKGLLGRKGWGFFLKGEFFK 153
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig9.18233.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FVF7_ECTSI3.470e-6097.03Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 88..109
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 53..58
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..23
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 59..76
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 24..32
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 77..87
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 110..141
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..15
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 16..23
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 33..52
NoneNo IPR availableSIGNALP_EUKSignalP-TMSignalP-TMcoord: 1..20
score: 0.596
NoneNo IPR availableTMHMMTMhelixcoord: 2..21
NoneNo IPR availableTMHMMTMhelixcoord: 31..48
NoneNo IPR availableTMHMMTMhelixcoord: 87..109
NoneNo IPR availableTMHMMTMhelixcoord: 60..82

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig9contigEcto-sp6_S_contig9:2100800..2101225 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig9.18233.1mRNA_Ecto-sp6_S_contig9.18233.1Ectocarpus species6 EcLAC_371mRNAEcto-sp6_S_contig9 2100783..2101395 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp6_S_contig9.18233.1 ID=prot_Ecto-sp6_S_contig9.18233.1|Name=mRNA_Ecto-sp6_S_contig9.18233.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=142bp
MLYLMTAFKVALCLVHMWYGAPAAAPAPANALSWFPATLTVGGWLAFLWT
EFKLADKRVYTMGGVTTAAIATALAVTTPGQARRLQGIFFVFNLGVVVCM
LCVPVNYAANAVSALSLVKGLLGGKGWGFMKGEFFKWAPHS*
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