mRNA_Ecto-sp6_S_contig9.18233.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig9.18233.1
Unique NamemRNA_Ecto-sp6_S_contig9.18233.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig9.18233.1 vs. uniprot
Match: D7FVF7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVF7_ECTSI)

HSP 1 Score: 192 bits (487), Expect = 3.500e-59
Identity = 98/101 (97.03%), Postives = 99/101 (98.02%), Query Frame = 3 
Query:  279 ATLTVGGWLAFLWTEFKLADKRVYTMGGVTTAAIATALAVTTPGQARRLQGIFFVFNLGVVVCMLCVPVNYAANAVSALSLVKGLLGGKGWGF-MKGEFFK 578
            ATLTVGGWLAFLWTEFKLADKRVYTMGGVTTAAIATALAVTTPGQARRLQGIFFVFNLGVVVCMLCVPVNYAANAVSALSLVKGLLG KGWGF +KGEFFK
Sbjct:   53 ATLTVGGWLAFLWTEFKLADKRVYTMGGVTTAAIATALAVTTPGQARRLQGIFFVFNLGVVVCMLCVPVNYAANAVSALSLVKGLLGRKGWGFFLKGEFFK 153
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig9.18233.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FVF7_ECTSI3.500e-5997.03Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig9contigEcto-sp6_S_contig9:2100783..2101395 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size613
Hectar predicted targeting categorysignal peptide
Exons1
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-14_000940.1
Cds size426
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350539.328456-UTR-Ecto-sp6_S_contig9:2100782..21007991682350539.328456-UTR-Ecto-sp6_S_contig9:2100782..2100799Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig9 2100783..2100799 -
1682350539.3482811-UTR-Ecto-sp6_S_contig9:2101225..21013951682350539.3482811-UTR-Ecto-sp6_S_contig9:2101225..2101395Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig9 2101226..2101395 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350539.3400476-CDS-Ecto-sp6_S_contig9:2100799..21012251682350539.3400476-CDS-Ecto-sp6_S_contig9:2100799..2101225Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 2100800..2101225 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig9.18233.1prot_Ecto-sp6_S_contig9.18233.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig9 2100800..2101225 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig9.18233.1

>prot_Ecto-sp6_S_contig9.18233.1 ID=prot_Ecto-sp6_S_contig9.18233.1|Name=mRNA_Ecto-sp6_S_contig9.18233.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=142bp
MLYLMTAFKVALCLVHMWYGAPAAAPAPANALSWFPATLTVGGWLAFLWT
EFKLADKRVYTMGGVTTAAIATALAVTTPGQARRLQGIFFVFNLGVVVCM
LCVPVNYAANAVSALSLVKGLLGGKGWGFMKGEFFKWAPHS*
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mRNA from alignment at Ecto-sp6_S_contig9:2100783..2101395-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig9.18233.1 ID=mRNA_Ecto-sp6_S_contig9.18233.1|Name=mRNA_Ecto-sp6_S_contig9.18233.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=613bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:2100783..2101395- (Ectocarpus species6 EcLAC_371)
ATGATGCGCTCGGTCAACGAGGTGCTAATGCTAGTGCGTCTGAAGGGCTT
TGCTTCCGTGATGAAGTCCGCGCAGAAGAGGCAGGTTCGGTCTCGCCCCT
CACCCTACCGGCTTTCCTGATCGTGGTGGCGTTCACAATCTGCGAGTGGC
CCGTCCAGACCTCCACCGGCATGCTGTACCTGATGACGGCATTCAAGGTC
GCTCTGTGCTTGGTTCACATGTGGTATGGTGCCCCCGCCGCTGCCCCCGC
CCCCGCCAACGCACTTTCGTGGTTTCCAGCCACTCTCACGGTCGGTGGGT
GGCTCGCTTTCCTGTGGACCGAGTTCAAGCTGGCGGATAAACGGGTGTAC
ACCATGGGAGGGGTGACCACAGCGGCGATTGCCACGGCGCTTGCCGTGAC
GACACCCGGGCAAGCCAGGAGGCTCCAAGGAATTTTCTTTGTGTTCAACT
TGGGTGTCGTGGTGTGCATGCTATGCGTGCCTGTCAACTATGCCGCTAAT
GCCGTCAGTGCTTTGTCTCTCGTTAAGGGCTTGCTGGGCGGGAAAGGTTG
GGGCTTCATGAAAGGCGAATTCTTCAAATGGGCGCCGCATTCATGAACAC
GTCCACGAGCTGC
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig9:2100783..2101395-

>mRNA_Ecto-sp6_S_contig9.18233.1 ID=mRNA_Ecto-sp6_S_contig9.18233.1|Name=mRNA_Ecto-sp6_S_contig9.18233.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=426bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:2100783..2101395- (Ectocarpus species6 EcLAC_371)
ATGCTGTACCTGATGACGGCATTCAAGGTCGCTCTGTGCTTGGTTCACAT
GTGGTATGGTGCCCCCGCCGCTGCCCCCGCCCCCGCCAACGCACTTTCGT
GGTTTCCAGCCACTCTCACGGTCGGTGGGTGGCTCGCTTTCCTGTGGACC
GAGTTCAAGCTGGCGGATAAACGGGTGTACACCATGGGAGGGGTGACCAC
AGCGGCGATTGCCACGGCGCTTGCCGTGACGACACCCGGGCAAGCCAGGA
GGCTCCAAGGAATTTTCTTTGTGTTCAACTTGGGTGTCGTGGTGTGCATG
CTATGCGTGCCTGTCAACTATGCCGCTAATGCCGTCAGTGCTTTGTCTCT
CGTTAAGGGCTTGCTGGGCGGGAAAGGTTGGGGCTTCATGAAAGGCGAAT
TCTTCAAATGGGCGCCGCATTCATGA
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