prot_Ecto-sp6_S_contig108.1128.1 (polypeptide) Ectocarpus species6 EcLAC_371

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp6_S_contig108.1128.1
Unique Nameprot_Ecto-sp6_S_contig108.1128.1
Typepolypeptide
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Sequence length70
Homology
[Close]
BLAST of mRNA_Ecto-sp6_S_contig108.1128.1 vs. uniprot
Match: D7FY73_ECTSI (Topoisomerase 6 subunit B n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY73_ECTSI)

HSP 1 Score: 77.4 bits (189), Expect = 5.540e-15
Identity = 45/65 (69.23%), Postives = 47/65 (72.31%), Query Frame = 0 
Query:    1 MMHGCSERRRSLLLVLAGAVSERTSSRHIAGWLLPSRQCVGDE------LLYSRSFTSFAELSSA 59
            MMHGCSERRRSLLLVL GAVSERTSSR IAGWLLPSRQ VG        LL S SF   A  ++A
Sbjct:  714 MMHGCSERRRSLLLVLTGAVSERTSSRDIAGWLLPSRQFVGASSCTRGALLLSLSFRQRAGAAAA 778
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig108.1128.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FY73_ECTSI5.540e-1569.23Topoisomerase 6 subunit B n=1 Tax=Ectocarpus silic... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..10
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 11..21
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 22..26
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..26
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 27..69

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig108contigEcto-sp6_S_contig108:117940..118149 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig108.1128.1mRNA_Ecto-sp6_S_contig108.1128.1Ectocarpus species6 EcLAC_371mRNAEcto-sp6_S_contig108 117865..118230 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp6_S_contig108.1128.1 ID=prot_Ecto-sp6_S_contig108.1128.1|Name=mRNA_Ecto-sp6_S_contig108.1128.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=70bp
MMHGCSERRRSLLLVLAGAVSERTSSRHIAGWLLPSRQCVGDELLYSRSF
TSFAELSSACGGGGGGGEY*
back to top