mRNA_Ecto-sp6_S_contig108.1128.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig108.1128.1
Unique NamemRNA_Ecto-sp6_S_contig108.1128.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig108.1128.1 vs. uniprot
Match: D7FY73_ECTSI (Topoisomerase 6 subunit B n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY73_ECTSI)

HSP 1 Score: 120 bits (300), Expect = 4.380e-29
Identity = 69/90 (76.67%), Postives = 71/90 (78.89%), Query Frame = 1 
Query:    1 RGARGGSEDRNRKGSPPRVGSAVGGMMHGCSERRRSLLLVLAGAVSERTSSRHIAGWLLPSRQCVGDE------LLYSRSFTSFAELSSA 252
            RGARGGSE RNRKGSPPRVGSAVGGMMHGCSERRRSLLLVL GAVSERTSSR IAGWLLPSRQ VG        LL S SF   A  ++A
Sbjct:  689 RGARGGSEARNRKGSPPRVGSAVGGMMHGCSERRRSLLLVLTGAVSERTSSRDIAGWLLPSRQFVGASSCTRGALLLSLSFRQRAGAAAA 778
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig108.1128.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FY73_ECTSI4.380e-2976.67Topoisomerase 6 subunit B n=1 Tax=Ectocarpus silic... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig108contigEcto-sp6_S_contig108:117865..118230 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score77.8
Seed ortholog evalue2.2e-12
Seed eggNOG ortholog2880.D7FY73
Model size366
Hectar predicted targeting categorysignal peptide
Exons1
EggNOG OGs2C39T@1,2STY5@2759
Cds size210
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348767.3149877-UTR-Ecto-sp6_S_contig108:117864..1179391682348767.3149877-UTR-Ecto-sp6_S_contig108:117864..117939Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig108 117865..117939 +
1682348767.333819-UTR-Ecto-sp6_S_contig108:118149..1182301682348767.333819-UTR-Ecto-sp6_S_contig108:118149..118230Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig108 118150..118230 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348767.3250408-CDS-Ecto-sp6_S_contig108:117939..1181491682348767.3250408-CDS-Ecto-sp6_S_contig108:117939..118149Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig108 117940..118149 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig108.1128.1prot_Ecto-sp6_S_contig108.1128.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig108 117940..118149 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig108.1128.1

>prot_Ecto-sp6_S_contig108.1128.1 ID=prot_Ecto-sp6_S_contig108.1128.1|Name=mRNA_Ecto-sp6_S_contig108.1128.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=70bp
MMHGCSERRRSLLLVLAGAVSERTSSRHIAGWLLPSRQCVGDELLYSRSF
TSFAELSSACGGGGGGGEY*
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mRNA from alignment at Ecto-sp6_S_contig108:117865..118230+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig108.1128.1 ID=mRNA_Ecto-sp6_S_contig108.1128.1|Name=mRNA_Ecto-sp6_S_contig108.1128.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=366bp|location=Sequence derived from alignment at Ecto-sp6_S_contig108:117865..118230+ (Ectocarpus species6 EcLAC_371)
AGGGGAGCTCGCGGGGGCAGCGAAGATAGGAACCGTAAGGGGTCCCCCCC
CCGTGTGGGCAGCGCCGTCGGAGGGATGATGCACGGCTGCAGTGAGCGAC
GGCGGTCATTGCTGCTTGTTCTGGCCGGTGCCGTCTCCGAAAGAACGTCT
TCTCGCCACATTGCTGGCTGGTTGCTGCCTTCAAGGCAATGCGTAGGGGA
CGAGTTGCTGTACTCGCGGAGCTTTACTTCTTTCGCTGAGCTTTCGTCAG
CGTGCGGGGGTGGCGGCGGCGGGGGGGAGTACTAATAGAATGACGTTTTC
AACGCTTGGTTTAGTTTCTCGTTGTTTTCGGTTCATGGAATCAACATCCA
CGGATCAAGTACGAAG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig108:117865..118230+

>mRNA_Ecto-sp6_S_contig108.1128.1 ID=mRNA_Ecto-sp6_S_contig108.1128.1|Name=mRNA_Ecto-sp6_S_contig108.1128.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=210bp|location=Sequence derived from alignment at Ecto-sp6_S_contig108:117865..118230+ (Ectocarpus species6 EcLAC_371)
ATGATGCACGGCTGCAGTGAGCGACGGCGGTCATTGCTGCTTGTTCTGGC
CGGTGCCGTCTCCGAAAGAACGTCTTCTCGCCACATTGCTGGCTGGTTGC
TGCCTTCAAGGCAATGCGTAGGGGACGAGTTGCTGTACTCGCGGAGCTTT
ACTTCTTTCGCTGAGCTTTCGTCAGCGTGCGGGGGTGGCGGCGGCGGGGG
GGAGTACTAA
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