prot_Ecto-sp6_S_contig10.521.1 (polypeptide) Ectocarpus species6 EcLAC_371

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp6_S_contig10.521.1
Unique Name	prot_Ecto-sp6_S_contig10.521.1
Type	polypeptide
Organism	Ectocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Sequence length	750

Homology

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BLAST of mRNA_Ecto-sp6_S_contig10.521.1 vs. uniprot
Match: A0A6H5KH38_9PHAE (UBX domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH38_9PHAE)

HSP 1 Score: 909 bits (2350), Expect = 0.000e+0
Identity = 664/1046 (63.48%), Postives = 673/1046 (64.34%), Query Frame = 0

Query:    1 IATAALGATAEHAPGPSVPSLHATEAEHRQRVFEKQRELEAKQKKQERGEAKRXXXQELAIWKEXXXXXXXXKGGGGGKGPAVQTSPGEGKAVGGDADRADQGRVGASLGAPAE---------------------------------------LRGKELHLRCPFPPPGRAIAGDELDSSTVESVGLFPRGRLMVQFSDGATIKQGEGAMPSAGNDQAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RKSRVEVGTLQDILMDNICQRIRGGGQHQAVSYGGLDAVTGTRILQRLADLRALTPAMLSAFRGCPVAELSLDRNPRVTNALLAELGRKVSIMSLSLAHNDAMTLEGIESLAGLRALASLDISGCKVTNGWLKVIAKLPALETLVLRGCTKVADLGILGLSRGAXXXXXXXXXXXXXXXXXXXAHLSSMVVGGKLECLRLDGLVGLSDDGLDALLLGDGDGL---GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAPASSSLRVLSLSRCPGVADQGLARLGASRALRASLRELDVSGTSATESGLVRLLDPSSXXXXXXXXXXXXXXXXXGRRRPAPLRLESLVLQHGGGGITSVGLSALVGLTSLTRLDLEGCRGSGVTSQALAGLARLVRLQWLSVAAVPAFDDDALTAVCSSCNALRVLNLGSTSVARAAGLALLGSAMIDLSLAHTNIDDDTMDAVASLPRLTTLTLRGTAVTGAGVARLSGLRGLRSLVLTGTRAAQEGGAGGGASSAVERLRARTAALNIRL 749
            +ATAALGATAEHAPGPSVPSLHATEAEHRQRVFEKQRELEAKQKKQERGE+  XXX ELAIWKE XXXXXXX GG  GKGPAVQTSPGEGKA GGDADRADQGR GA LG  AE                                       LR KEL LRCPFPPPGRAIAGDELDSSTVESVGLFPRGRLMVQFSDGATIK+GEGAMPSA NDQAG   XXXXXXXX              XXXXX                                                                                                                                                                                                                                                                  R +       QDIL+DNICQRIRG GQHQAVSYGGLD  TGTRILQRLA+LRALTPAMLSAFRGCPVAELSLDRNPRVTNALLAELGRKVSIMSLSLAHNDAMTLEGIESLAGLRALASLDISGCKVTNGWLKVIAKLPALETLVLRGCTKVADLGILGL+RGAXXXXXXXXXXXXXXXXXXXAHLSSMVVGGKLECLRLDGLVGLSDDGLDALLLGDGDGL      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    EAPASSSLRVLSLSRCPGVADQGLARLGASR LRASLRELDVSGTS TESGL+RLLDPSS                 GRRRPAPLRLESLVLQHGGGGIT VGLSALVGLTSLTRLDLEGCRG GVTSQALAGLARLVRLQWLSVAAVPAFDDDALTAVCSSCNALRVLNLGSTSVARAAGL LLGSA+IDLSLAHTNIDDDTMDAVASLPRLTTLTLRGTAVTGAGVARLSGLRGLRSLVLTGTRAAQEGGAGGGASSAVE LRARTAALNIRL
Sbjct:   38 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--GRRRPAPLRLESLVLQHGGGGITGVGLSALVGLTSLTRLDLEGCRGPGVTSQALAGLARLVRLQWLSVAAVPAFDDDALTAVCSSCNALRVLNLGSTSVARAAGLGLLGSAVIDLSLAHTNIDDDTMDAVASLPRLTTLTLRGTAVTGAGVARLSGLRGLRSLVLTGTRAAQEGGAGGGASSAVEGLRARTAALNIRL 1081

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BLAST of mRNA_Ecto-sp6_S_contig10.521.1 vs. uniprot
Match: D8LSQ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSQ0_ECTSI)

HSP 1 Score: 716 bits (1847), Expect = 1.800e-252
Identity = 449/523 (85.85%), Postives = 452/523 (86.42%), Query Frame = 0

Query:  228 MDNICQRIRGGGQHQAVSYGGLDAVTGTRILQRLADLRALTPAMLSAFRGCPVAELSLDRNPRVTNALLAELGRKVSIMSLSLAHNDAMTLEGIESLAGLRALASLDISGCKVTNGWLKVIAKLPALETLVLRGCTKVADLGILGLSRGAXXXXXXXXXXXXXXXXXXXAHLSSMVVGGKLECLRLDGLVGLSDDGLDALLLGDGDGLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAPASSSLRVLSLSRCPGVADQGLARLGASRALRASLRELDVSGTSATESGLVRLLDPSSXXXXXXXXXXXXXXXXXGRRRPAP-LRLESLVLQHGGGGITSVGLSALVGLTSLTRLDLEGCRGSGVTSQALAGLARLVRLQWLSVAAVPAFDDDALTAVCSSCNALRVLNLGSTSVARAAGLALLGSAMIDLSLAHTNIDDDTMDAVASLPRLTTLTLRGTAVTGAGVARLSGLRGLRSLVLTGTRAAQEGGAGGGASSAVERLRARTAALNIRL 749
            MDNICQRIRGGGQHQAVSYGGLDA TGTRILQRLADLRALTPAMLSAFRGCPVAELSLDRNPRVTNALLAELGRKVSIMSLSLAHNDAMTLEGIESLAGLRALASLDISGCKVTNGWLKVIAKLPALETL+LRGCTKVADLGILGLSRGAXXXXXXXXXXXXXXXXXXXAHLSSMVVGGKLECLRLDGLVGLSDDGLDALLLGDGDGLG                                                            GLARLGASR LRASLRELDVSGTSATESGLVRLLDPS+XXXXXXXXXXXXXXXXX        LRLESLVLQHGGGGITSVGLSALVGLTSLTR+DLEGCRG GVTSQALAGLARLVRLQWLSVAAVPAFDDDALTAVCSSCNALRVLNLGSTSVARAAGLALLGSAMIDLSLAHTNIDDDTMDAVASLPRLTTLTLRGTAVTGAGVARLSGLRGLRSLVLTGTRAAQEGGAGGGASSAVERLRARTAALNIRL
Sbjct:    1 MDNICQRIRGGGQHQAVSYGGLDAATGTRILQRLADLRALTPAMLSAFRGCPVAELSLDRNPRVTNALLAELGRKVSIMSLSLAHNDAMTLEGIESLAGLRALASLDISGCKVTNGWLKVIAKLPALETLLLRGCTKVADLGILGLSRGAXXXXXXXXXXXXXXXXXXXAHLSSMVVGGKLECLRLDGLVGLSDDGLDALLLGDGDGLG------------------------------------------------------------GLARLGASRPLRASLRELDVSGTSATESGLVRLLDPSAXXXXXXXXXXXXXXXXXXXXXXXXXLRLESLVLQHGGGGITSVGLSALVGLTSLTRMDLEGCRGPGVTSQALAGLARLVRLQWLSVAAVPAFDDDALTAVCSSCNALRVLNLGSTSVARAAGLALLGSAMIDLSLAHTNIDDDTMDAVASLPRLTTLTLRGTAVTGAGVARLSGLRGLRSLVLTGTRAAQEGGAGGGASSAVERLRARTAALNIRL 463

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp6_S_contig10.521.1 vs. uniprot

BLAST of mRNA_Ecto-sp6_S_contig10.521.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A6H5KH38_9PHAE	0.000e+0	63.48	UBX domain-containing protein n=1 Tax=Ectocarpus s...	[more]
D8LSQ0_ECTSI	1.800e-252	85.85	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 52..72
None	No IPR available	PANTHER	PTHR13382	MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B	coord: 278..527 coord: 411..648
None	No IPR available	PANTHER	PTHR13382:SF6	SCF E3 UBIQUITIN LIGASE COMPLEX F-BOX PROTEIN GRR1	coord: 278..527
None	No IPR available	PANTHER	PTHR13382:SF6	SCF E3 UBIQUITIN LIGASE COMPLEX F-BOX PROTEIN GRR1	coord: 411..648
None	No IPR available	SUPERFAMILY	52058	L domain-like	coord: 282..719
IPR006553	Leucine-rich repeat, cysteine-containing subtype	SMART	SM00367	LRR_CC_2	coord: 377..402 e-value: 0.055 score: 22.6 coord: 479..504 e-value: 3.6 score: 16.6 coord: 302..327 e-value: 210.0 score: 4.2 coord: 584..611 e-value: 5.7 score: 15.9 coord: 351..376 e-value: 4.6 score: 16.2 coord: 684..708 e-value: 440.0 score: 1.7
IPR032675	Leucine-rich repeat domain superfamily	GENE3D	3.80.10.10		coord: 255..431 e-value: 1.6E-23 score: 85.2 coord: 553..726 e-value: 8.4E-21 score: 76.2
IPR032675	Leucine-rich repeat domain superfamily	GENE3D	3.80.10.10		coord: 458..533 e-value: 3.4E-7 score: 31.8
IPR001611	Leucine-rich repeat	PFAM	PF13516	LRR_6	coord: 378..400 e-value: 0.05 score: 13.7

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp6_S_contig10	contig	Ecto-sp6_S_contig10:1071114..1081306 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species6 EcLAC_371 OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp6_S_contig10.521.1	mRNA_Ecto-sp6_S_contig10.521.1	Ectocarpus species6 EcLAC_371	mRNA	Ecto-sp6_S_contig10 1071114..1081306 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp6_S_contig10.521.1 ID=prot_Ecto-sp6_S_contig10.521.1|Name=mRNA_Ecto-sp6_S_contig10.521.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=750bp
IATAALGATAEHAPGPSVPSLHATEAEHRQRVFEKQRELEAKQKKQERGE
AKRRREQELAIWKEQREEAKQRKGGGGGKGPAVQTSPGEGKAVGGDADRA
DQGRVGASLGAPAELRGKELHLRCPFPPPGRAIAGDELDSSTVESVGLFP
RGRLMVQFSDGATIKQGEGAMPSAGNDQAGGGGGGGGGEPDGGGGDDGGG
GHRGGGGSGGPAARKSRVEVGTLQDILMDNICQRIRGGGQHQAVSYGGLD
AVTGTRILQRLADLRALTPAMLSAFRGCPVAELSLDRNPRVTNALLAELG
RKVSIMSLSLAHNDAMTLEGIESLAGLRALASLDISGCKVTNGWLKVIAK
LPALETLVLRGCTKVADLGILGLSRGAPSLTCLDLAGCTGVTDAGVAHLS
SMVVGGKLECLRLDGLVGLSDDGLDALLLGDGDGLGAAAAAAAAVPAASA
ARAAAARAATARASSSLSDGGGEEEAPASSSLRVLSLSRCPGVADQGLAR
LGASRALRASLRELDVSGTSATESGLVRLLDPSSAAAAAASGEAGGGGAV
VGRRRPAPLRLESLVLQHGGGGITSVGLSALVGLTSLTRLDLEGCRGSGV
TSQALAGLARLVRLQWLSVAAVPAFDDDALTAVCSSCNALRVLNLGSTSV
ARAAGLALLGSAMIDLSLAHTNIDDDTMDAVASLPRLTTLTLRGTAVTGA
GVARLSGLRGLRSLVLTGTRAAQEGGAGGGASSAVERLRARTAALNIRL*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR006553	Leu-rich_rpt_Cys-con_subtyp
IPR032675	LRR_dom_sf
IPR001611	Leu-rich_rpt