mRNA_Ecto-sp6_S_contig10.521.1 (mRNA) Ectocarpus species6 EcLAC_371
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig10.521.1 vs. uniprot
Match: A0A6H5KH38_9PHAE (UBX domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH38_9PHAE) HSP 1 Score: 909 bits (2350), Expect = 0.000e+0 Identity = 664/1046 (63.48%), Postives = 673/1046 (64.34%), Query Frame = 1 Query: 1 IATAALGATAEHAPGPSVPSLHATEAEHRQRVFEKQRELEAKQKKQERGEAKRXXXQELAIWKEXXXXXXXXKGGGGGKGPAVQTSPGEGKAVGGDADRADQGRVGASLGAPAE---------------------------------------LRGKELHLRCPFPPPGRAIAGDELDSSTVESVGLFPRGRLMVQFSDGATIKQGEGAMPSAGNDQAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RKSRVEVGTLQDILMDNICQRIRGGGQHQAVSYGGLDAVTGTRILQRLADLRALTPAMLSAFRGCPVAELSLDRNPRVTNALLAELGRKVSIMSLSLAHNDAMTLEGIESLAGLRALASLDISGCKVTNGWLKVIAKLPALETLVLRGCTKVADLGILGLSRGAXXXXXXXXXXXXXXXXXXXAHLSSMVVGGKLECLRLDGLVGLSDDGLDALLLGDGDGL---GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAPASSSLRVLSLSRCPGVADQGLARLGASRALRASLRELDVSGTSATESGLVRLLDPSSXXXXXXXXXXXXXXXXXGRRRPAPLRLESLVLQHGGGGITSVGLSALVGLTSLTRLDLEGCRGSGVTSQALAGLARLVRLQWLSVAAVPAFDDDALTAVCSSCNALRVLNLGSTSVARAAGLALLGSAMIDLSLAHTNIDDDTMDAVASLPRLTTLTLRGTAVTGAGVARLSGLRGLRSLVLTGTRAAQEGGAGGGASSAVERLRARTAALNIRL 2247 +ATAALGATAEHAPGPSVPSLHATEAEHRQRVFEKQRELEAKQKKQERGE+ XXX ELAIWKE XXXXXXX GG GKGPAVQTSPGEGKA GGDADRADQGR GA LG AE LR KEL LRCPFPPPGRAIAGDELDSSTVESVGLFPRGRLMVQFSDGATIK+GEGAMPSA NDQAG XXXXXXXX XXXXX R + QDIL+DNICQRIRG GQHQAVSYGGLD TGTRILQRLA+LRALTPAMLSAFRGCPVAELSLDRNPRVTNALLAELGRKVSIMSLSLAHNDAMTLEGIESLAGLRALASLDISGCKVTNGWLKVIAKLPALETLVLRGCTKVADLGILGL+RGAXXXXXXXXXXXXXXXXXXXAHLSSMVVGGKLECLRLDGLVGLSDDGLDALLLGDGDGL XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX EAPASSSLRVLSLSRCPGVADQGLARLGASR LRASLRELDVSGTS TESGL+RLLDPSS GRRRPAPLRLESLVLQHGGGGIT VGLSALVGLTSLTRLDLEGCRG GVTSQALAGLARLVRLQWLSVAAVPAFDDDALTAVCSSCNALRVLNLGSTSVARAAGL LLGSA+IDLSLAHTNIDDDTMDAVASLPRLTTLTLRGTAVTGAGVARLSGLRGLRSLVLTGTRAAQEGGAGGGASSAVE LRARTAALNIRL Sbjct: 38 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--GRRRPAPLRLESLVLQHGGGGITGVGLSALVGLTSLTRLDLEGCRGPGVTSQALAGLARLVRLQWLSVAAVPAFDDDALTAVCSSCNALRVLNLGSTSVARAAGLGLLGSAVIDLSLAHTNIDDDTMDAVASLPRLTTLTLRGTAVTGAGVARLSGLRGLRSLVLTGTRAAQEGGAGGGASSAVEGLRARTAALNIRL 1081
BLAST of mRNA_Ecto-sp6_S_contig10.521.1 vs. uniprot
Match: D8LSQ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSQ0_ECTSI) HSP 1 Score: 716 bits (1847), Expect = 1.800e-252 Identity = 449/523 (85.85%), Postives = 452/523 (86.42%), Query Frame = 1 Query: 682 MDNICQRIRGGGQHQAVSYGGLDAVTGTRILQRLADLRALTPAMLSAFRGCPVAELSLDRNPRVTNALLAELGRKVSIMSLSLAHNDAMTLEGIESLAGLRALASLDISGCKVTNGWLKVIAKLPALETLVLRGCTKVADLGILGLSRGAXXXXXXXXXXXXXXXXXXXAHLSSMVVGGKLECLRLDGLVGLSDDGLDALLLGDGDGLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAPASSSLRVLSLSRCPGVADQGLARLGASRALRASLRELDVSGTSATESGLVRLLDPSSXXXXXXXXXXXXXXXXXGRRRPAP-LRLESLVLQHGGGGITSVGLSALVGLTSLTRLDLEGCRGSGVTSQALAGLARLVRLQWLSVAAVPAFDDDALTAVCSSCNALRVLNLGSTSVARAAGLALLGSAMIDLSLAHTNIDDDTMDAVASLPRLTTLTLRGTAVTGAGVARLSGLRGLRSLVLTGTRAAQEGGAGGGASSAVERLRARTAALNIRL 2247 MDNICQRIRGGGQHQAVSYGGLDA TGTRILQRLADLRALTPAMLSAFRGCPVAELSLDRNPRVTNALLAELGRKVSIMSLSLAHNDAMTLEGIESLAGLRALASLDISGCKVTNGWLKVIAKLPALETL+LRGCTKVADLGILGLSRGAXXXXXXXXXXXXXXXXXXXAHLSSMVVGGKLECLRLDGLVGLSDDGLDALLLGDGDGLG GLARLGASR LRASLRELDVSGTSATESGLVRLLDPS+XXXXXXXXXXXXXXXXX LRLESLVLQHGGGGITSVGLSALVGLTSLTR+DLEGCRG GVTSQALAGLARLVRLQWLSVAAVPAFDDDALTAVCSSCNALRVLNLGSTSVARAAGLALLGSAMIDLSLAHTNIDDDTMDAVASLPRLTTLTLRGTAVTGAGVARLSGLRGLRSLVLTGTRAAQEGGAGGGASSAVERLRARTAALNIRL Sbjct: 1 MDNICQRIRGGGQHQAVSYGGLDAATGTRILQRLADLRALTPAMLSAFRGCPVAELSLDRNPRVTNALLAELGRKVSIMSLSLAHNDAMTLEGIESLAGLRALASLDISGCKVTNGWLKVIAKLPALETLLLRGCTKVADLGILGLSRGAXXXXXXXXXXXXXXXXXXXAHLSSMVVGGKLECLRLDGLVGLSDDGLDALLLGDGDGLG------------------------------------------------------------GLARLGASRPLRASLRELDVSGTSATESGLVRLLDPSAXXXXXXXXXXXXXXXXXXXXXXXXXLRLESLVLQHGGGGITSVGLSALVGLTSLTRMDLEGCRGPGVTSQALAGLARLVRLQWLSVAAVPAFDDDALTAVCSSCNALRVLNLGSTSVARAAGLALLGSAMIDLSLAHTNIDDDTMDAVASLPRLTTLTLRGTAVTGAGVARLSGLRGLRSLVLTGTRAAQEGGAGGGASSAVERLRARTAALNIRL 463
BLAST of mRNA_Ecto-sp6_S_contig10.521.1 vs. uniprot
Match: D8LSP9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSP9_ECTSI) HSP 1 Score: 194 bits (493), Expect = 5.180e-55 Identity = 106/118 (89.83%), Postives = 106/118 (89.83%), Query Frame = 2 Query: 35 MPRDRASHRCMPPRRSIDSACSRSSESWKPSKRSRREGRRSAGENRNWRFGRSSERRRSSARAAEGVKVPPCRPLPAKGRR*GETQTVRTRGGWVLLSGPRLSCEARSFTCGA-PSPP 385 MPRDRASHRCMPPRRSI SACSRSSESWKPSKRSRREGRRSAGENRNWRFGRSSERRRSSARAAEGVKVPPCRPLPAKGRR GETQTVRTRGGWVLLSGPRL AR A P PP Sbjct: 1 MPRDRASHRCMPPRRSIASACSRSSESWKPSKRSRREGRRSAGENRNWRFGRSSERRRSSARAAEGVKVPPCRPLPAKGRREGETQTVRTRGGWVLLSGPRLRKAARQGASSAVPLPP 118 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig10.521.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig10.521.1 >prot_Ecto-sp6_S_contig10.521.1 ID=prot_Ecto-sp6_S_contig10.521.1|Name=mRNA_Ecto-sp6_S_contig10.521.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=750bp IATAALGATAEHAPGPSVPSLHATEAEHRQRVFEKQRELEAKQKKQERGEback to top mRNA from alignment at Ecto-sp6_S_contig10:1071114..1081306- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig10.521.1 ID=mRNA_Ecto-sp6_S_contig10.521.1|Name=mRNA_Ecto-sp6_S_contig10.521.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=10193bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:1071114..1081306- (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig10:1071114..1081306- >mRNA_Ecto-sp6_S_contig10.521.1 ID=mRNA_Ecto-sp6_S_contig10.521.1|Name=mRNA_Ecto-sp6_S_contig10.521.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=2250bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:1071114..1081306- (Ectocarpus species6 EcLAC_371)back to top |