mRNA_Ecto-sp6_S_contig9.18311.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig9.18311.1
Unique NamemRNA_Ecto-sp6_S_contig9.18311.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig9.18311.1 vs. uniprot
Match: D7FV84_ECTSI (Pseudouridine synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV84_ECTSI)

HSP 1 Score: 763 bits (1971), Expect = 4.030e-277
Identity = 378/387 (97.67%), Postives = 380/387 (98.19%), Query Frame = 1 
Query:   82 MRYFLLHKPRGCVTSTVDDTGRGRPTVYDVAKAAGVPNFGPVGRLDFDTSGVLLFTDDYKLKKAISSPTYKGKAAVGTVPSMEKVYHLLVAGTITPEDKGMDLLQEPLHFSRKLDGPGGSWTKPAEARVLLTKTFKTGQPVPWRFKPGTVATITWIEVVLREGKNRQIRRLCRRSEFELTRLHRISVGPIVLGDVEEGSCRELTRQEVEALYKRCLPVDPLCPTIDAVQDILHSRLSQTARRIRTTAEVEGHRFKAREHSSATDVPQKDTPERPTAEDAEQRRAAKARDGERGCPCRTTQGPGRRRAKAFATEEDLASIVKRLIDFARRDLHETPAGPDGESVGPDYCPGEKESLAQARAVPPNETHMVCGYRSSQIERLGLTYGTM 1242
            MRYF+LHKPRGCVTSTVDDTGRGRPTVYDVAKAAGVPNFGPVGRLDFDTSGVLLFTDDYKLKKAISSPTYKGKAAVGTVPSMEKVYHLLVAGTITPEDKGMDLLQEPLHFSRKLDGPGGSWTKPAEARVLLTKTFKTGQPVPWRFKPGTVATITWIEVVLREGKNRQIRRLCRRSEFELTRLHRISVGPIVLGDVEEGSCRELTRQEVEALYKRCLP DPLCPTIDAVQDIL SRLSQTARRIRTTAEV GHRFKAREHSSA DVPQKD PERPTAEDAEQRRAAKARDGERGCPCRTTQGPGRRR KAFATEEDLASI+KRLIDFARRDLHETPAGPDGES GPDYCPGEKESLAQARAVPPNETHMVCGYRSSQIERLGLTYGTM
Sbjct:    1 MRYFMLHKPRGCVTSTVDDTGRGRPTVYDVAKAAGVPNFGPVGRLDFDTSGVLLFTDDYKLKKAISSPTYKGKAAVGTVPSMEKVYHLLVAGTITPEDKGMDLLQEPLHFSRKLDGPGGSWTKPAEARVLLTKTFKTGQPVPWRFKPGTVATITWIEVVLREGKNRQIRRLCRRSEFELTRLHRISVGPIVLGDVEEGSCRELTRQEVEALYKRCLPEDPLCPTIDAVQDILQSRLSQTARRIRTTAEVGGHRFKAREHSSAMDVPQKDMPERPTAEDAEQRRAAKARDGERGCPCRTTQGPGRRRVKAFATEEDLASIMKRLIDFARRDLHETPAGPDGESAGPDYCPGEKESLAQARAVPPNETHMVCGYRSSQIERLGLTYGTM 387
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BLAST of mRNA_Ecto-sp6_S_contig9.18311.1 vs. uniprot
Match: A0A6H5L3F2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3F2_9PHAE)

HSP 1 Score: 478 bits (1231), Expect = 3.440e-166
Identity = 242/269 (89.96%), Postives = 246/269 (91.45%), Query Frame = 1 
Query:  436 GSWTKPAEARVLLTKTFKTGQPVPWRFKPGTVATITWIEVVLREGKNRQIRRLCRRSEFELTRLHRISVGPIVLGDVEEGSCRELTRQEVEALYKRCLPVDPLCPTIDAVQDILHSRLSQTARRIRTTAEVEGHRFKAREHSSATDVPQKDTPERPTAEDAEQRRAAKARDGERGCPCRTTQGPGRRRAKAFATEEDLASIVKRLIDFARRDLHETPAGPDGESVGPDYCPGEKESLAQARAVPPNETHMVCGYRSSQIERLGLTYGTM 1242
            GSWTKPAEARVLLTKTFKTGQPVPWRFKPGTVATITWIEVVLREGKNRQIRRLCRRSEFELTRLHRISVGPIVLGDV EGSCRELTR+EVEALYKRCLP DPLCPTIDAVQDIL SRL+QTARRIRT AEV GHRF+AREHSSA DVPQKD PERPT EDAEQR AAK RDGE GCP          RAKAFA EEDLASIVKRLIDF+RRDLHETPAGPDGES GPDYCPGEKESLAQARAVPPNETHMVCGYRSSQIERLGLTYGTM
Sbjct:   15 GSWTKPAEARVLLTKTFKTGQPVPWRFKPGTVATITWIEVVLREGKNRQIRRLCRRSEFELTRLHRISVGPIVLGDVAEGSCRELTRREVEALYKRCLPEDPLCPTIDAVQDILKSRLAQTARRIRTAAEVGGHRFEAREHSSAMDVPQKDAPERPTREDAEQRWAAKVRDGECGCPXXXXXXXXXXRAKAFAGEEDLASIVKRLIDFSRRDLHETPAGPDGESAGPDYCPGEKESLAQARAVPPNETHMVCGYRSSQIERLGLTYGTM 283
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BLAST of mRNA_Ecto-sp6_S_contig9.18311.1 vs. uniprot
Match: A0A6H5L0P5_9PHAE (PseudoU_synth_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0P5_9PHAE)

HSP 1 Score: 207 bits (526), Expect = 3.750e-62
Identity = 99/102 (97.06%), Postives = 102/102 (100.00%), Query Frame = 1 
Query:   82 MRYFLLHKPRGCVTSTVDDTGRGRPTVYDVAKAAGVPNFGPVGRLDFDTSGVLLFTDDYKLKKAISSPTYKGKAAVGTVPSMEKVYHLLVAGTITPEDKGMD 387
            MRYF+LHKPRGCVTSTVDDTGRGRPTVYDVAKAAGVPNFGPVGRLDFDTSGVLLFTDDYKLKKAISSPTYKGKAAVGTVPSMEKVYHLLVAGTITPEDKG++
Sbjct:    1 MRYFMLHKPRGCVTSTVDDTGRGRPTVYDVAKAAGVPNFGPVGRLDFDTSGVLLFTDDYKLKKAISSPTYKGKAAVGTVPSMEKVYHLLVAGTITPEDKGVN 102
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BLAST of mRNA_Ecto-sp6_S_contig9.18311.1 vs. uniprot
Match: A0A2E7M5B4_9DELT (PseudoU_synth_2 domain-containing protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A2E7M5B4_9DELT)

HSP 1 Score: 157 bits (398), Expect = 8.100e-42
Identity = 90/223 (40.36%), Postives = 129/223 (57.85%), Query Frame = 1 
Query:   82 MRYFLLHKPRGCVTSTVDDTGRGRPTVYDVAKAAGVPNFGPVGRLDFDTSGVLLFTDDYKLKKAISSPTYKGKAAVGTVPSMEKVYHLLVAGTITPEDKGMDLLQEPLHFSRKLDGPGGSWTKPAEARVLLTKTFKTGQPVPWRFKPGTVATITWIEVVLREGKNRQIRRLCRRSEFELTRLHRISVGPIVLGDVEEGSCRELTRQEVEALYKRCLPVDPLCP 750
            MRYF+L+KP GC+T+  D  GR   TVYD       P    VGRLD+ T G+LLFTDD +L +A+ +P +KG+A+  TVP + KVY + V   + P+D  + LL++PL +        G  T+PA +R +L +T                   +W+EV L EG++RQ+R LC RS  ++ +L RI++GP+ LGD+    CR L   EV ALY+  +P DP  P
Sbjct:    1 MRYFMLNKPAGCITAKRDFAGRS--TVYDHVPTH-FPELPHVGRLDYATEGLLLFTDDGRLAQALLNPGFKGRASPETVPPLAKVYRVKVRDRLDPDDHRIKLLEQPLRYR------SGVVTRPALSRFVLHRT-----------------RASWLEVTLFEGRHRQVRMLCERSGLQVLKLRRIALGPLELGDLRLRWCRPLHEAEVGALYEAAMPADPRPP 197
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BLAST of mRNA_Ecto-sp6_S_contig9.18311.1 vs. uniprot
Match: A0A838IEP5_9DELT (Pseudouridine synthase n=1 Tax=Bradymonadaceae bacterium TaxID=2740543 RepID=A0A838IEP5_9DELT)

HSP 1 Score: 134 bits (337), Expect = 3.200e-33
Identity = 86/226 (38.05%), Postives = 127/226 (56.19%), Query Frame = 1 
Query:   94 LLHKPRGCVTSTVDDTGRGRPTVYDVAKAAGVPNFGPVGRLDFDTSGVLLFTDDYKLKKAISSPTYKGKAAVGTVPSMEKVYHLLVAGTITPEDKGMDLLQEPLHFSRKLDGPGGSWTKPAEARVLLTKTFKTGQPVPWRFKPGTVATITWIEVVLREGKNRQIRRLCRRSEFELTRLHRISVGPIVLGDVEEGSCRELTRQEVEALYKRCLPVDPLCPTIDAVQD 771
            +++KP GC+T+  DD   GR TVY    A   P  G VGRLD++T G+LLFTDD +L +A+ +  + G         +EKVYH+ + G +   D  +  L+EPL       GPG + T+PA ARV+  +  KT                +WIE+V+ EG++RQ+R+LC RS  ++ +L R+ +GP+ LG++    CR L R EV ALY   L  D L P  +A+ +
Sbjct:    1 MMNKPAGCITARTDD--EGRQTVYAHVPAH-FPALGHVGRLDYNTEGLLLFTDDGRLSQALLNKAFSGAP-------VEKVYHVKIKGIVEDGDARLARLEEPLK-----SGPGKT-TEPARARVVERRD-KT----------------SWIELVICEGRHRQVRKLCERSGLQIRKLRRMRLGPLELGELRLRWCRPLERAEVAALYAAALADDAL-PDFEAIDN 192
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BLAST of mRNA_Ecto-sp6_S_contig9.18311.1 vs. uniprot
Match: A0A328C9E6_9DELT (Pseudouridine synthase n=9 Tax=Bradymonadales TaxID=1779134 RepID=A0A328C9E6_9DELT)

HSP 1 Score: 129 bits (325), Expect = 1.540e-31
Identity = 80/227 (35.24%), Postives = 122/227 (53.74%), Query Frame = 1 
Query:   82 MRYFLLHKPRGCVTSTVDDTGRGRPTVYDVAKAAGVPNFGP---VGRLDFDTSGVLLFTDDYKLKKAISSPTYKGKAAV----GTVPSMEKVYHLLVAGTITPEDKGMDLLQEPLHFSRKLDGPGGSWTKPAEARVLLTKTFKTGQPVPWRFKPGTVATITWIEVVLREGKNRQIRRLCRRSEFELTRLHRISVGPIVLGDVEEGSCRELTRQEVEALYKRCLPVDP 741
            M  F+++KP GC+T+ VD     RPTVYD        +F P   VGRLDF+T G+LLFTDD KL +A+ +  Y G  ++      +  +EKVYH+ V   + P+   +  LQEPL +        G +T PA    +  ++                 + TWI + + EG++RQ+R+LC RS  ++ +L R+ +GP+ LG+++   CRELT +E+  LY      DP
Sbjct:    1 MPAFIMNKPPGCITARVDF--EDRPTVYDHVPK----HFEPLPHVGRLDFNTEGLLLFTDDGKLAQALLNKDYAGPTSMEETSAELAPIEKVYHVKVKAKLGPDHPVLAALQEPLEYEP------GKFTAPATTGWVAERS-----------------SCTWISITITEGRHRQVRKLCERSGLQIRKLRRVRLGPLGLGELKLRWCRELTDEELTELYVAAFGHDP 198
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BLAST of mRNA_Ecto-sp6_S_contig9.18311.1 vs. uniprot
Match: E6SKM7_THEM7 (Pseudouridine synthase n=1 Tax=Thermaerobacter marianensis (strain ATCC 700841 / DSM 12885 / JCM 10246 / 7p75a) TaxID=644966 RepID=E6SKM7_THEM7)

HSP 1 Score: 132 bits (331), Expect = 3.730e-31
Identity = 85/210 (40.48%), Postives = 122/210 (58.10%), Query Frame = 1 
Query:   85 RYFLLHKPRGCVTSTVDDTGRGRPTVYDVAKAAGVPNFGPVGRLDFDTSGVLLFTDDYKLKKAISSPTYKGKAAVGTVPSMEKVYHLLVAGTITPEDKGMDLLQEPLHFSRKLDGPGGSWTKPAEARVLLTKTFKTGQPVPWRFKPGTVATITWIEVVLREGKNRQIRRLCRRSEFELTRLHRISVGPIVLGDVEEGSCRELTRQEVEAL 714
            RY +LHKPRG VT+  D   +GRP+V D  + AG+    PVGRLDFD+ G+LL TDD +L  A++ P ++          ++KVYH+LV G + P+   +  L++ +      DGP     +   AR+L             R +PG      W+EVVLREG+ RQ+RR+CR   +++ RL R++VGP+ LG +  G  R L+RQEVEAL
Sbjct:   68 RYVMLHKPRGMVTTLRDP--QGRPSVGDFCRRAGLRGLHPVGRLDFDSEGLLLLTDDGELTFALTHPRHE----------VDKVYHVLVRGPLEPQR--LRRLRDGVLLD---DGPA----RARSARIL-------------RPRPGG----GWVEVVLREGRKRQVRRMCRAVGWDVVRLVRVAVGPLRLGRLTAGQWRPLSRQEVEAL 239
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BLAST of mRNA_Ecto-sp6_S_contig9.18311.1 vs. uniprot
Match: A0A7S1FRY8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FRY8_9STRA)

HSP 1 Score: 124 bits (311), Expect = 2.390e-30
Identity = 60/108 (55.56%), Postives = 74/108 (68.52%), Query Frame = 1 
Query:   88 YFLLHKPRGCVTSTVDDTGRGRPTVYDVAKAAGVPNFGPVGRLDFDTSGVLLFTDDYKLKKAISSPTYKGKAAVGTVPSMEKVYHLLVAGTITPEDKGMDLLQEPLHF 411
            YF LHKPRGC++ST D+TG GR T+YD     G P  G VGRLDFDTSGV+L T+D KL  A++SP +KG A   TV  +EKVY + VAG      + + LLQEPLH+
Sbjct:   25 YFALHKPRGCLSSTKDETGLGRLTIYDFVTRCGFPKVGHVGRLDFDTSGVILLTNDVKLSIALTSPRFKGNADPDTVSPLEKVYLVTVAGYFEENSEAIRLLQEPLHY 132
[Close]
BLAST of mRNA_Ecto-sp6_S_contig9.18311.1 vs. uniprot
Match: A0A2W4K569_9FIRM (Pseudouridine synthase n=1 Tax=Firmicutes bacterium TaxID=1879010 RepID=A0A2W4K569_9FIRM)

HSP 1 Score: 123 bits (309), Expect = 9.950e-29
Identity = 80/212 (37.74%), Postives = 115/212 (54.25%), Query Frame = 1 
Query:   85 RYFLLHKPRGCVTSTVDDTGRGRPTVYDVAKAAGVPNFGPVGRLDFDTSGVLLFTDDYKLKKAISSPTYKGKAAVGTVPSMEKVYHLLVAGTITPEDKGMDLLQEPLHFSRKLDGPGGSWTKPAEARVLLTKTFKTGQPVPWRFKPGTVATITWIEVVLREGKNRQIRRLCRRSEFELTRLHRISVGPIVLGDVEEGSCRELTRQEVEALYK 720
            RY +LHKPRG +T+  D   +GRPTV ++ +  G+    PVGRLDFD+ G+LL TDD +L  A++ P ++       VP   KVYH+LV G +T      D L+      R  DGP         AR    +          R +P   AT  W+E+ + EG+ RQ+RR+C    + + RL R++VGP+ LG++  G  R L  +EVEAL +
Sbjct:   68 RYVMLHKPRGVLTTMYDP--QGRPTVAEICRRQGLEGLHPVGRLDFDSEGLLLLTDDGELTFALTHPRHQ-------VP---KVYHVLVRGQVTA-----DRLRRLREGVRLEDGP---------ARAATAR----------RLRPENGAT--WVEITIHEGRKRQVRRMCAAVGWRVLRLVRVAVGPLRLGNLAPGQLRPLRPEEVEALAR 241
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BLAST of mRNA_Ecto-sp6_S_contig9.18311.1 vs. uniprot
Match: K6NYC6_9FIRM (Pseudouridine synthase n=2 Tax=Thermaerobacter TaxID=73918 RepID=K6NYC6_9FIRM)

HSP 1 Score: 124 bits (312), Expect = 1.980e-28
Identity = 80/210 (38.10%), Postives = 118/210 (56.19%), Query Frame = 1 
Query:   85 RYFLLHKPRGCVTSTVDDTGRGRPTVYDVAKAAGVPNFGPVGRLDFDTSGVLLFTDDYKLKKAISSPTYKGKAAVGTVPSMEKVYHLLVAGTITPEDKGMDLLQEPLHFSRKLDGPGGSWTKPAEARVLLTKTFKTGQPVPWRFKPGTVATITWIEVVLREGKNRQIRRLCRRSEFELTRLHRISVGPIVLGDVEEGSCRELTRQEVEAL 714
            RY L HKPRG VT+  D   +GRP V D  +  G+    PVGRLDFD+ G+LL TDD +L  A++ P ++          ++KVYH+LV G + P    +  L++ +      DGP         AR  + +  +         +PG      W+EVVLREG+ RQ+RR+C+   +++ RL R++VGP+ LG +  G+ R L+RQEVE+L
Sbjct:   68 RYVLFHKPRGMVTTLRDP--QGRPNVGDFCRRHGLQGLHPVGRLDFDSEGLLLLTDDGELTFALTHPRHE----------VDKVYHVLVRGDLDPAR--LRRLRDGVLLD---DGP---------ARARIARVLRP--------RPGG----GWVEVVLREGRKRQVRRMCQAVGWQVVRLVRVAVGPLRLGRLAAGAWRPLSRQEVESL 239
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig9.18311.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FV84_ECTSI4.030e-27797.67Pseudouridine synthase n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5L3F2_9PHAE3.440e-16689.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L0P5_9PHAE3.750e-6297.06PseudoU_synth_2 domain-containing protein n=1 Tax=... [more]
A0A2E7M5B4_9DELT8.100e-4240.36PseudoU_synth_2 domain-containing protein n=1 Tax=... [more]
A0A838IEP5_9DELT3.200e-3338.05Pseudouridine synthase n=1 Tax=Bradymonadaceae bac... [more]
A0A328C9E6_9DELT1.540e-3135.24Pseudouridine synthase n=9 Tax=Bradymonadales TaxI... [more]
E6SKM7_THEM73.730e-3140.48Pseudouridine synthase n=1 Tax=Thermaerobacter mar... [more]
A0A7S1FRY8_9STRA2.390e-3055.56Hypothetical protein (Fragment) n=1 Tax=Corethron ... [more]
A0A2W4K569_9FIRM9.950e-2937.74Pseudouridine synthase n=1 Tax=Firmicutes bacteriu... [more]
K6NYC6_9FIRM1.980e-2838.10Pseudouridine synthase n=2 Tax=Thermaerobacter Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig9contigEcto-sp6_S_contig9:2929884..2934718 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score768.5
Seed ortholog evalue1.5e-219
Seed eggNOG ortholog2880.D7FV84
Model size1412
Hectar predicted targeting categoryother localisation
Exons7
EggNOG free text desc.RNA pseudouridylate synthase
EggNOG OGs2D5AV@1,2SXY6@2759
Ec32 ortholog descriptionPseudouridine synthase, catalytic domain
Ec32 orthologEc-14_000160.1
Cds size1164
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig9.18311.1prot_Ecto-sp6_S_contig9.18311.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig9 2930051..2934637 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350550.0312023-UTR-Ecto-sp6_S_contig9:2929883..29300501682350550.0312023-UTR-Ecto-sp6_S_contig9:2929883..2930050Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig9 2929884..2930050 -
1682350550.0961308-UTR-Ecto-sp6_S_contig9:2934637..29347181682350550.0961308-UTR-Ecto-sp6_S_contig9:2934637..2934718Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig9 2934638..2934718 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350550.0410192-CDS-Ecto-sp6_S_contig9:2930050..29306871682350550.0410192-CDS-Ecto-sp6_S_contig9:2930050..2930687Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 2930051..2930687 -
1682350550.049082-CDS-Ecto-sp6_S_contig9:2931095..29311481682350550.049082-CDS-Ecto-sp6_S_contig9:2931095..2931148Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 2931096..2931148 -
1682350550.0567565-CDS-Ecto-sp6_S_contig9:2931836..29319551682350550.0567565-CDS-Ecto-sp6_S_contig9:2931836..2931955Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 2931837..2931955 -
1682350550.064329-CDS-Ecto-sp6_S_contig9:2932245..29323001682350550.064329-CDS-Ecto-sp6_S_contig9:2932245..2932300Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 2932246..2932300 -
1682350550.071999-CDS-Ecto-sp6_S_contig9:2932745..29328391682350550.071999-CDS-Ecto-sp6_S_contig9:2932745..2932839Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 2932746..2932839 -
1682350550.0799532-CDS-Ecto-sp6_S_contig9:2933628..29337311682350550.0799532-CDS-Ecto-sp6_S_contig9:2933628..2933731Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 2933629..2933731 -
1682350550.0883296-CDS-Ecto-sp6_S_contig9:2934534..29346371682350550.0883296-CDS-Ecto-sp6_S_contig9:2934534..2934637Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 2934535..2934637 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig9.18311.1

>prot_Ecto-sp6_S_contig9.18311.1 ID=prot_Ecto-sp6_S_contig9.18311.1|Name=mRNA_Ecto-sp6_S_contig9.18311.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=388bp
MRYFLLHKPRGCVTSTVDDTGRGRPTVYDVAKAAGVPNFGPVGRLDFDTS
GVLLFTDDYKLKKAISSPTYKGKAAVGTVPSMEKVYHLLVAGTITPEDKG
MDLLQEPLHFSRKLDGPGGSWTKPAEARVLLTKTFKTGQPVPWRFKPGTV
ATITWIEVVLREGKNRQIRRLCRRSEFELTRLHRISVGPIVLGDVEEGSC
RELTRQEVEALYKRCLPVDPLCPTIDAVQDILHSRLSQTARRIRTTAEVE
GHRFKAREHSSATDVPQKDTPERPTAEDAEQRRAAKARDGERGCPCRTTQ
GPGRRRAKAFATEEDLASIVKRLIDFARRDLHETPAGPDGESVGPDYCPG
EKESLAQARAVPPNETHMVCGYRSSQIERLGLTYGTM*
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mRNA from alignment at Ecto-sp6_S_contig9:2929884..2934718-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig9.18311.1 ID=mRNA_Ecto-sp6_S_contig9.18311.1|Name=mRNA_Ecto-sp6_S_contig9.18311.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=4835bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:2929884..2934718- (Ectocarpus species6 EcLAC_371)
GGGGCAGCTGAGCAGCGAGAGCTGCAGGTGGCTGCAGCAGTGGCAGCTGT
CTCTCACATTCACCCTCCGACTAGCCACACGATGCGTTACTTTCTGCTTC
ACAAGCCTCGCGGGTGTGTCACAAGCACGGTTGACGACACCGGGCGTGGC
AGGCCTACAGTGTACGACGTCGCCAAGGCCGCAGGTGAATCTTGGGTTAC
ACTTGGCTGCCAACAGCCTGCAGCTAGTAGCACGGAGCCGTCAACCACCT
CTCTCCATCTCCCTCTCCCCCCCCTCCCCTCCTCTGCTATCTGCCGCACT
GCGACATAGAGCGCACGGCACAGGTCCTGGTAGCCCGTTGGTCAGCTACA
CAGGTGATGGGTCCAGAAAGAATCGCGTCCGCTCATTGGGAAAGGCTGTA
CAGTCCCGAGGGACGAAGGCTGACTTGGCTTCAGTATGGAAGTGTCCCCA
AATGCACTGTGGACACTTTCTATACTCAAGCCAATTCATTAATTTTTTCC
AGTACCCAGCAGTTCAGTCACCAACTTAACTTTTACAAACTTTATGCTAT
AATACCAGCAAGGGGGCCCGCGACTTGGGGAGATATTGTGTACAGCAAGT
CAGAGTAGGCCCAGGAGAGGCACACAGGCATCACACAGCAGTACATCACA
CAGCTTACCGCCTCACACAAGCCTGGTAAACCAAGGTTTCCCACGCGCGT
TTCACGCAGCGGAGCATGGGGACATGGTCACGACTACGGTGCGGTAACAC
AGGCATTTGAGTAGCTGTGTCCCGAAAGTGTCCCCGTTTGGGCTTCCAGT
ACTGGGAGGGTTTGCTGCTGCGCCACAACCTGTGCTCCCATCTTGGCACC
ACACCCTCACACTAGTCGTCCTCTCTTCCTCCCCTCTCTCCTCCCTTGCT
TCATGCCTCACATGGCTTCTAAATGGCACGCATTATTCACCGACACCGGC
ACGGCGGTGCAACCACGTTGCTTTACTCACTTGGCAGGTGTTCCGAACTT
CGGTCCTGTGGGCAGGCTTGACTTCGACACCTCGGGCGTACTCTTGTTTA
CCGATGACTACAAGCTCAAGAAGGCCATCTCGTCCCCAACGTAAGCACTA
AACGACAGTCGGGATCTATCTGCACCTCCACCGATTGAAAATATTCTTGA
AATCATCGACCCAAGGCAGCATCGCTGCTTGCTGTGGTCGCAAGCATCGA
AGGGTTGTTTACCGTCCTCGGCTGCTGTTCAGCCACAGCCACGAGCGCCA
ATTGACGGTAGGCGATGGCAAGGTTTGATTTCCCTACGCTGTTTTGGAGG
TTGATGCAACTACAGAGTAGCTTGCACATATTTTCAAGTCTGATGCGGCA
CTATTTTTCAGCTCGGTAGATGAGCTTACCCATTTACGACGACTCCACCA
CCAAGACTTGGTGGACTACTGAACTACAGTATTGCAGAAGGGGACATGCT
AACCCGGCCCCGCCACGGTGTGGGGATGGAATAACCAGCGTGTTGTGGGA
GTTACCGCGCGCTCGCCAGCAGCAGCGAGCGGGGGTGGAGAAGGCCAGCT
ACTGTGGCGGCAGCGGGAGATGCTTGATTTGAAGGTCACATCGGGATCGA
TCGCTGTGTGCCCCCTTTTACTTCAGTACGTCAATCTGCAAGATGCAACG
CGGCGAGCTGCGGACGTTCCTGTATTTTCTTCTTTGGTCCGTCTTCCAGA
CACAGTACAATATAGTTTGTGACGCACAAGCTTAAGCTTGCCCGTACACG
CTAAGAGTGTTCGAGCAATCAATTCGTATCTCCATGAACCGGTTGACGAG
CTCACGCACGATTTTTTTTTTTGGTGACGGCAAACTGAAGCTGCTGGTAA
CGCGTGCTTTCTCCTCTTGTATACGGTAGGTATAAAGGGAAGGCGGCCGT
GGGCACGGTGCCTTCAATGGAGAAAGTCTATCACCTCCTTGTTGCAGGCA
CGATCACACCAGAGGATAAGGGGGTGAGTCTATTCTACCATGCAGGACGC
TACAATACTTCATGTGGCATATGACTAAACAGTGGTAGATACTCCACAGG
GCAGAATGGGCCAAACGATACCAGCTCTGAAATTTACAGTTCGTGGTTGG
CGCATGGTGGGCTCGCGATAGGACGTTCGGTTCAATCTCGTCTGCAATTT
CCTTTTGGATACTCTCACTGTGTTTGAAGCTAGAAGTATTTGAGAGTGCA
GCGGCGCGGTGCTCATGTGTACGATGACTGCGTTTGCCGATGATGGTAAC
CAAGAAACTACCTGGTATACGCGAGTAGAGATTACCACACGAACGTCGTA
GTTGGTGCTTCATACGGGAGGGTGCTATATCATGAGGCACTCCAGCCATC
CAACCGTCCGACTCGTGCCATGTTCGTGCGCACATCCTACCATGCCTACC
ATGGGGGCATCCATGCAGATGGACCTGCTGCAAGAACCTCTACACTTCAG
CCGCAAGCTGGACGGCCCAGGCGGTGAGGTTCGAATGCCGCGTATTCCTT
GTTCCTATCTGAATGGTGACCACGAGCGTTGTATAGTATCTCGTGGTATC
TTTGAAGCAACACCCATGATTTTTTCACATGTCTGCGTGAGGGATACACT
CACACTTTCGTGACGTAAGTGCAGGATAGGGTTAGCTTTGTGCCGCACGC
ACTTGCGACGTGTCACGCTTCTCTCAATGCTGCAGCTCTATGTTTCCTAC
CCTATTCCAATTTGTAAACCATGACTGGCCTCCTCCGGGCCTGCTGTTCT
AAATGGTCGTCAGGGAGCTGGACCAAACCAGCAGAGGCACGCGTTTTGCT
AACCAAGACCTTTAAAACAGGACAGCCAGTTCCGTGGAGATTCAAGCCGG
GCACAGTAGCAACGATTACTTGGATAGAGGTGGTGAGTCCTCCACATGCT
GCCGAAATGGAATACCGTCCGGATGATCGCGAGAACCATGGTCTACAATA
GATACCTTCTGGACGCAGAGGTTGACCCTTGATCTTGATCTTGCTGTAGC
AGTTAGCCCTTACCGCTCGTCTTTCGAGCCTATCACGGTACACTTTGCTG
TGGCAGTTGGATCGCGTCACCTTAGGAACCTTGACGCTAGACAACGGAGT
TGACGACGGCTTGTTCGAGCCTCTTCCGTGGAGGACACCTTTTAAATGTC
TGTGGTTGCCCAGGCGTCCGAAGGCTGTATTACACGTGCGTGTGCTCTCA
TGAACAGCTGTCGATGTTTTGGACTCAGGATTTATTGACGCTTCAGTACA
CGCAGCCACGCCCGAGGCGAGCGGTAGGTATTCGAGCTGCTCCTGGTTGA
AATAGGTATTTTGCTAGAGGATACGTATCTCTAGGCTGTGTATTGTGGTC
CGATGCAGCCGTTGCAAGGTTAGCGGTACTCATTTGTGGAGTAGCTGCTT
GAGCACAAATCCAGTGAAGGTTTCTAGCATCGTAGCTAAAACCAACCGGT
TGCTAGTCGTGGTCGTGGTCGCGCAACCTTCAACGTCTTGTCGCGGGTGT
ACTGATCGGCGCTGCAAAGTTTCTTCGCCCGGCGAAAACCCCTTGCCCTT
GTGCCTCCACTCGTGAACAGGTGCTGCGTGAGGGCAAGAACCGACAGATC
AGACGGTTGTGCCGACGAAGCGAGTGAGTAGCTTGGAAACCTTGTTTTGA
TTTGTTTGTTCGTTTCGCCTCCAAAACAACGTGTCCATGCGAGGAAGACC
ATAGGCAGTATGTGGTTTCATCCTAGGCAACCAATGGTAGAATGACGCGT
AAATAGTGTGTTCCTCCCGAAAATCGCAACAGCACTCTGTTGTACAAGCC
CTGCTGCTGTCGTTAACCCCCGACGTTTTTCGTACTTCACCCCCTCGGTG
AAACTACATGTGTTGAGTACCCCAGACGGTAGTTCGGGAGTATCTCTTGC
GCGCAGTGGCAGGTCACCTTTCTAAGCCATTTGGGGGTAATGTGCCGTTT
CCACCGAAGCACGATCACTTTCAAGCTCGCTAGTCTTGGGAGACATATAA
TGTCCAGTTTTGACGTTGTTGCGCTACGCAGGTTTGAGCTTACTAGACTA
CACCGGATATCCGTGGGCCCGATTGTGCTCGGCGATGTTGAGGAGGGTTC
CTGCCGCGAGTTGACCAGACAAGAAGTCGAGGCGCTCTACAAGCGCTGCT
TACCGGTAGACCCGCTGTGCCCCACCATCGACGCCGTACAAGATATCCTC
CATAGTCGCCTCTCCCAGACAGCACGCCGAATACGCACCACGGCTGAGGT
TGAGGGGCACCGCTTCAAGGCAAGGGAGCATTCAAGTGCGACGGATGTCC
CTCAGAAGGACACGCCTGAGAGACCCACGGCAGAAGATGCAGAGCAAAGG
CGGGCAGCGAAAGCAAGAGACGGGGAACGTGGCTGCCCATGCAGAACAAC
GCAAGGTCCGGGGAGACGAAGAGCGAAAGCGTTTGCTACCGAGGAAGACT
TGGCGAGCATCGTGAAACGCTTGATAGACTTTGCCCGACGGGACTTGCAC
GAGACTCCAGCAGGCCCGGACGGGGAATCGGTAGGGCCAGATTACTGCCC
TGGCGAGAAGGAATCATTGGCACAGGCACGCGCGGTGCCCCCCAACGAGA
CCCACATGGTGTGCGGCTATCGCTCTTCTCAGATCGAGCGGCTTGGTCTC
ACGTACGGTACGATGTAATTTTTTTTCTGAACGTGCCTCTGCGACATATA
TAGCAGGACGTTTGTTGTAGATACCCTTAATCGCGCTGTATTTCAAGTTG
TCCGCAACTTTATTTGGAACGCGACTCACGAGGTTGTGGGACAGATGCTA
ATAAAGTTTCGTACTGGTATGTATCGCTCCATATT
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig9:2929884..2934718-

>mRNA_Ecto-sp6_S_contig9.18311.1 ID=mRNA_Ecto-sp6_S_contig9.18311.1|Name=mRNA_Ecto-sp6_S_contig9.18311.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1164bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:2929884..2934718- (Ectocarpus species6 EcLAC_371)
ATGCGTTACTTTCTGCTTCACAAGCCTCGCGGGTGTGTCACAAGCACGGT
TGACGACACCGGGCGTGGCAGGCCTACAGTGTACGACGTCGCCAAGGCCG
CAGGTGTTCCGAACTTCGGTCCTGTGGGCAGGCTTGACTTCGACACCTCG
GGCGTACTCTTGTTTACCGATGACTACAAGCTCAAGAAGGCCATCTCGTC
CCCAACGTATAAAGGGAAGGCGGCCGTGGGCACGGTGCCTTCAATGGAGA
AAGTCTATCACCTCCTTGTTGCAGGCACGATCACACCAGAGGATAAGGGG
ATGGACCTGCTGCAAGAACCTCTACACTTCAGCCGCAAGCTGGACGGCCC
AGGCGGGAGCTGGACCAAACCAGCAGAGGCACGCGTTTTGCTAACCAAGA
CCTTTAAAACAGGACAGCCAGTTCCGTGGAGATTCAAGCCGGGCACAGTA
GCAACGATTACTTGGATAGAGGTGGTGCTGCGTGAGGGCAAGAACCGACA
GATCAGACGGTTGTGCCGACGAAGCGAGTTTGAGCTTACTAGACTACACC
GGATATCCGTGGGCCCGATTGTGCTCGGCGATGTTGAGGAGGGTTCCTGC
CGCGAGTTGACCAGACAAGAAGTCGAGGCGCTCTACAAGCGCTGCTTACC
GGTAGACCCGCTGTGCCCCACCATCGACGCCGTACAAGATATCCTCCATA
GTCGCCTCTCCCAGACAGCACGCCGAATACGCACCACGGCTGAGGTTGAG
GGGCACCGCTTCAAGGCAAGGGAGCATTCAAGTGCGACGGATGTCCCTCA
GAAGGACACGCCTGAGAGACCCACGGCAGAAGATGCAGAGCAAAGGCGGG
CAGCGAAAGCAAGAGACGGGGAACGTGGCTGCCCATGCAGAACAACGCAA
GGTCCGGGGAGACGAAGAGCGAAAGCGTTTGCTACCGAGGAAGACTTGGC
GAGCATCGTGAAACGCTTGATAGACTTTGCCCGACGGGACTTGCACGAGA
CTCCAGCAGGCCCGGACGGGGAATCGGTAGGGCCAGATTACTGCCCTGGC
GAGAAGGAATCATTGGCACAGGCACGCGCGGTGCCCCCCAACGAGACCCA
CATGGTGTGCGGCTATCGCTCTTCTCAGATCGAGCGGCTTGGTCTCACGT
ACGGTACGATGTAA
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