prot_Ecto-sp6_S_contig9.18311.1 (polypeptide) Ectocarpus species6 EcLAC_371

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp6_S_contig9.18311.1
Unique Nameprot_Ecto-sp6_S_contig9.18311.1
Typepolypeptide
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Sequence length388
Homology
BLAST of mRNA_Ecto-sp6_S_contig9.18311.1 vs. uniprot
Match: D7FV84_ECTSI (Pseudouridine synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV84_ECTSI)

HSP 1 Score: 763 bits (1971), Expect = 1.530e-278
Identity = 378/387 (97.67%), Postives = 380/387 (98.19%), Query Frame = 0
Query:    1 MRYFLLHKPRGCVTSTVDDTGRGRPTVYDVAKAAGVPNFGPVGRLDFDTSGVLLFTDDYKLKKAISSPTYKGKAAVGTVPSMEKVYHLLVAGTITPEDKGMDLLQEPLHFSRKLDGPGGSWTKPAEARVLLTKTFKTGQPVPWRFKPGTVATITWIEVVLREGKNRQIRRLCRRSEFELTRLHRISVGPIVLGDVEEGSCRELTRQEVEALYKRCLPVDPLCPTIDAVQDILHSRLSQTARRIRTTAEVEGHRFKAREHSSATDVPQKDTPERPTAEDAEQRRAAKARDGERGCPCRTTQGPGRRRAKAFATEEDLASIVKRLIDFARRDLHETPAGPDGESVGPDYCPGEKESLAQARAVPPNETHMVCGYRSSQIERLGLTYGTM 387
            MRYF+LHKPRGCVTSTVDDTGRGRPTVYDVAKAAGVPNFGPVGRLDFDTSGVLLFTDDYKLKKAISSPTYKGKAAVGTVPSMEKVYHLLVAGTITPEDKGMDLLQEPLHFSRKLDGPGGSWTKPAEARVLLTKTFKTGQPVPWRFKPGTVATITWIEVVLREGKNRQIRRLCRRSEFELTRLHRISVGPIVLGDVEEGSCRELTRQEVEALYKRCLP DPLCPTIDAVQDIL SRLSQTARRIRTTAEV GHRFKAREHSSA DVPQKD PERPTAEDAEQRRAAKARDGERGCPCRTTQGPGRRR KAFATEEDLASI+KRLIDFARRDLHETPAGPDGES GPDYCPGEKESLAQARAVPPNETHMVCGYRSSQIERLGLTYGTM
Sbjct:    1 MRYFMLHKPRGCVTSTVDDTGRGRPTVYDVAKAAGVPNFGPVGRLDFDTSGVLLFTDDYKLKKAISSPTYKGKAAVGTVPSMEKVYHLLVAGTITPEDKGMDLLQEPLHFSRKLDGPGGSWTKPAEARVLLTKTFKTGQPVPWRFKPGTVATITWIEVVLREGKNRQIRRLCRRSEFELTRLHRISVGPIVLGDVEEGSCRELTRQEVEALYKRCLPEDPLCPTIDAVQDILQSRLSQTARRIRTTAEVGGHRFKAREHSSAMDVPQKDMPERPTAEDAEQRRAAKARDGERGCPCRTTQGPGRRRVKAFATEEDLASIMKRLIDFARRDLHETPAGPDGESAGPDYCPGEKESLAQARAVPPNETHMVCGYRSSQIERLGLTYGTM 387          
BLAST of mRNA_Ecto-sp6_S_contig9.18311.1 vs. uniprot
Match: A0A6H5L3F2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3F2_9PHAE)

HSP 1 Score: 478 bits (1230), Expect = 2.340e-167
Identity = 242/269 (89.96%), Postives = 246/269 (91.45%), Query Frame = 0
Query:  119 GSWTKPAEARVLLTKTFKTGQPVPWRFKPGTVATITWIEVVLREGKNRQIRRLCRRSEFELTRLHRISVGPIVLGDVEEGSCRELTRQEVEALYKRCLPVDPLCPTIDAVQDILHSRLSQTARRIRTTAEVEGHRFKAREHSSATDVPQKDTPERPTAEDAEQRRAAKARDGERGCPCRTTQGPGRRRAKAFATEEDLASIVKRLIDFARRDLHETPAGPDGESVGPDYCPGEKESLAQARAVPPNETHMVCGYRSSQIERLGLTYGTM 387
            GSWTKPAEARVLLTKTFKTGQPVPWRFKPGTVATITWIEVVLREGKNRQIRRLCRRSEFELTRLHRISVGPIVLGDV EGSCRELTR+EVEALYKRCLP DPLCPTIDAVQDIL SRL+QTARRIRT AEV GHRF+AREHSSA DVPQKD PERPT EDAEQR AAK RDGE GCP          RAKAFA EEDLASIVKRLIDF+RRDLHETPAGPDGES GPDYCPGEKESLAQARAVPPNETHMVCGYRSSQIERLGLTYGTM
Sbjct:   15 GSWTKPAEARVLLTKTFKTGQPVPWRFKPGTVATITWIEVVLREGKNRQIRRLCRRSEFELTRLHRISVGPIVLGDVAEGSCRELTRREVEALYKRCLPEDPLCPTIDAVQDILKSRLAQTARRIRTAAEVGGHRFEAREHSSAMDVPQKDAPERPTREDAEQRWAAKVRDGECGCPXXXXXXXXXXRAKAFAGEEDLASIVKRLIDFSRRDLHETPAGPDGESAGPDYCPGEKESLAQARAVPPNETHMVCGYRSSQIERLGLTYGTM 283          
BLAST of mRNA_Ecto-sp6_S_contig9.18311.1 vs. uniprot
Match: A0A6H5L0P5_9PHAE (PseudoU_synth_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0P5_9PHAE)

HSP 1 Score: 207 bits (527), Expect = 2.900e-63
Identity = 99/102 (97.06%), Postives = 102/102 (100.00%), Query Frame = 0
Query:    1 MRYFLLHKPRGCVTSTVDDTGRGRPTVYDVAKAAGVPNFGPVGRLDFDTSGVLLFTDDYKLKKAISSPTYKGKAAVGTVPSMEKVYHLLVAGTITPEDKGMD 102
            MRYF+LHKPRGCVTSTVDDTGRGRPTVYDVAKAAGVPNFGPVGRLDFDTSGVLLFTDDYKLKKAISSPTYKGKAAVGTVPSMEKVYHLLVAGTITPEDKG++
Sbjct:    1 MRYFMLHKPRGCVTSTVDDTGRGRPTVYDVAKAAGVPNFGPVGRLDFDTSGVLLFTDDYKLKKAISSPTYKGKAAVGTVPSMEKVYHLLVAGTITPEDKGVN 102          
BLAST of mRNA_Ecto-sp6_S_contig9.18311.1 vs. uniprot
Match: A0A2E7M5B4_9DELT (PseudoU_synth_2 domain-containing protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A2E7M5B4_9DELT)

HSP 1 Score: 158 bits (399), Expect = 9.870e-43
Identity = 90/223 (40.36%), Postives = 129/223 (57.85%), Query Frame = 0
Query:    1 MRYFLLHKPRGCVTSTVDDTGRGRPTVYDVAKAAGVPNFGPVGRLDFDTSGVLLFTDDYKLKKAISSPTYKGKAAVGTVPSMEKVYHLLVAGTITPEDKGMDLLQEPLHFSRKLDGPGGSWTKPAEARVLLTKTFKTGQPVPWRFKPGTVATITWIEVVLREGKNRQIRRLCRRSEFELTRLHRISVGPIVLGDVEEGSCRELTRQEVEALYKRCLPVDPLCP 223
            MRYF+L+KP GC+T+  D  GR   TVYD       P    VGRLD+ T G+LLFTDD +L +A+ +P +KG+A+  TVP + KVY + V   + P+D  + LL++PL +        G  T+PA +R +L +T                   +W+EV L EG++RQ+R LC RS  ++ +L RI++GP+ LGD+    CR L   EV ALY+  +P DP  P
Sbjct:    1 MRYFMLNKPAGCITAKRDFAGRS--TVYDHVPTH-FPELPHVGRLDYATEGLLLFTDDGRLAQALLNPGFKGRASPETVPPLAKVYRVKVRDRLDPDDHRIKLLEQPLRYR------SGVVTRPALSRFVLHRT-----------------RASWLEVTLFEGRHRQVRMLCERSGLQVLKLRRIALGPLELGDLRLRWCRPLHEAEVGALYEAAMPADPRPP 197          
BLAST of mRNA_Ecto-sp6_S_contig9.18311.1 vs. uniprot
Match: A0A838IEP5_9DELT (Pseudouridine synthase n=1 Tax=Bradymonadaceae bacterium TaxID=2740543 RepID=A0A838IEP5_9DELT)

HSP 1 Score: 134 bits (337), Expect = 7.520e-34
Identity = 86/226 (38.05%), Postives = 127/226 (56.19%), Query Frame = 0
Query:    5 LLHKPRGCVTSTVDDTGRGRPTVYDVAKAAGVPNFGPVGRLDFDTSGVLLFTDDYKLKKAISSPTYKGKAAVGTVPSMEKVYHLLVAGTITPEDKGMDLLQEPLHFSRKLDGPGGSWTKPAEARVLLTKTFKTGQPVPWRFKPGTVATITWIEVVLREGKNRQIRRLCRRSEFELTRLHRISVGPIVLGDVEEGSCRELTRQEVEALYKRCLPVDPLCPTIDAVQD 230
            +++KP GC+T+  DD   GR TVY    A   P  G VGRLD++T G+LLFTDD +L +A+ +  + G         +EKVYH+ + G +   D  +  L+EPL       GPG + T+PA ARV+  +  KT                +WIE+V+ EG++RQ+R+LC RS  ++ +L R+ +GP+ LG++    CR L R EV ALY   L  D L P  +A+ +
Sbjct:    1 MMNKPAGCITARTDD--EGRQTVYAHVPAH-FPALGHVGRLDYNTEGLLLFTDDGRLSQALLNKAFSGAP-------VEKVYHVKIKGIVEDGDARLARLEEPLK-----SGPGKT-TEPARARVVERRD-KT----------------SWIELVICEGRHRQVRKLCERSGLQIRKLRRMRLGPLELGELRLRWCRPLERAEVAALYAAALADDAL-PDFEAIDN 192          
BLAST of mRNA_Ecto-sp6_S_contig9.18311.1 vs. uniprot
Match: A0A328C9E6_9DELT (Pseudouridine synthase n=9 Tax=Bradymonadales TaxID=1779134 RepID=A0A328C9E6_9DELT)

HSP 1 Score: 130 bits (326), Expect = 2.770e-32
Identity = 80/227 (35.24%), Postives = 122/227 (53.74%), Query Frame = 0
Query:    1 MRYFLLHKPRGCVTSTVDDTGRGRPTVYDVAKAAGVPNFGP---VGRLDFDTSGVLLFTDDYKLKKAISSPTYKGKAAV----GTVPSMEKVYHLLVAGTITPEDKGMDLLQEPLHFSRKLDGPGGSWTKPAEARVLLTKTFKTGQPVPWRFKPGTVATITWIEVVLREGKNRQIRRLCRRSEFELTRLHRISVGPIVLGDVEEGSCRELTRQEVEALYKRCLPVDP 220
            M  F+++KP GC+T+ VD     RPTVYD        +F P   VGRLDF+T G+LLFTDD KL +A+ +  Y G  ++      +  +EKVYH+ V   + P+   +  LQEPL +        G +T PA    +  ++                 + TWI + + EG++RQ+R+LC RS  ++ +L R+ +GP+ LG+++   CRELT +E+  LY      DP
Sbjct:    1 MPAFIMNKPPGCITARVDF--EDRPTVYDHVPK----HFEPLPHVGRLDFNTEGLLLFTDDGKLAQALLNKDYAGPTSMEETSAELAPIEKVYHVKVKAKLGPDHPVLAALQEPLEYEP------GKFTAPATTGWVAERS-----------------SCTWISITITEGRHRQVRKLCERSGLQIRKLRRVRLGPLGLGELKLRWCRELTDEELTELYVAAFGHDP 198          
BLAST of mRNA_Ecto-sp6_S_contig9.18311.1 vs. uniprot
Match: E6SKM7_THEM7 (Pseudouridine synthase n=1 Tax=Thermaerobacter marianensis (strain ATCC 700841 / DSM 12885 / JCM 10246 / 7p75a) TaxID=644966 RepID=E6SKM7_THEM7)

HSP 1 Score: 132 bits (332), Expect = 6.480e-32
Identity = 85/210 (40.48%), Postives = 122/210 (58.10%), Query Frame = 0
Query:    2 RYFLLHKPRGCVTSTVDDTGRGRPTVYDVAKAAGVPNFGPVGRLDFDTSGVLLFTDDYKLKKAISSPTYKGKAAVGTVPSMEKVYHLLVAGTITPEDKGMDLLQEPLHFSRKLDGPGGSWTKPAEARVLLTKTFKTGQPVPWRFKPGTVATITWIEVVLREGKNRQIRRLCRRSEFELTRLHRISVGPIVLGDVEEGSCRELTRQEVEAL 211
            RY +LHKPRG VT+  D   +GRP+V D  + AG+    PVGRLDFD+ G+LL TDD +L  A++ P ++          ++KVYH+LV G + P+   +  L++ +      DGP     +   AR+L             R +PG      W+EVVLREG+ RQ+RR+CR   +++ RL R++VGP+ LG +  G  R L+RQEVEAL
Sbjct:   68 RYVMLHKPRGMVTTLRDP--QGRPSVGDFCRRAGLRGLHPVGRLDFDSEGLLLLTDDGELTFALTHPRHE----------VDKVYHVLVRGPLEPQR--LRRLRDGVLLD---DGPA----RARSARIL-------------RPRPGG----GWVEVVLREGRKRQVRRMCRAVGWDVVRLVRVAVGPLRLGRLTAGQWRPLSRQEVEAL 239          
BLAST of mRNA_Ecto-sp6_S_contig9.18311.1 vs. uniprot
Match: A0A7S1FRY8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FRY8_9STRA)

HSP 1 Score: 124 bits (312), Expect = 4.730e-31
Identity = 60/108 (55.56%), Postives = 74/108 (68.52%), Query Frame = 0
Query:    3 YFLLHKPRGCVTSTVDDTGRGRPTVYDVAKAAGVPNFGPVGRLDFDTSGVLLFTDDYKLKKAISSPTYKGKAAVGTVPSMEKVYHLLVAGTITPEDKGMDLLQEPLHF 110
            YF LHKPRGC++ST D+TG GR T+YD     G P  G VGRLDFDTSGV+L T+D KL  A++SP +KG A   TV  +EKVY + VAG      + + LLQEPLH+
Sbjct:   25 YFALHKPRGCLSSTKDETGLGRLTIYDFVTRCGFPKVGHVGRLDFDTSGVILLTNDVKLSIALTSPRFKGNADPDTVSPLEKVYLVTVAGYFEENSEAIRLLQEPLHY 132          
BLAST of mRNA_Ecto-sp6_S_contig9.18311.1 vs. uniprot
Match: A0A2W4K569_9FIRM (Pseudouridine synthase n=1 Tax=Firmicutes bacterium TaxID=1879010 RepID=A0A2W4K569_9FIRM)

HSP 1 Score: 124 bits (310), Expect = 1.990e-29
Identity = 80/212 (37.74%), Postives = 115/212 (54.25%), Query Frame = 0
Query:    2 RYFLLHKPRGCVTSTVDDTGRGRPTVYDVAKAAGVPNFGPVGRLDFDTSGVLLFTDDYKLKKAISSPTYKGKAAVGTVPSMEKVYHLLVAGTITPEDKGMDLLQEPLHFSRKLDGPGGSWTKPAEARVLLTKTFKTGQPVPWRFKPGTVATITWIEVVLREGKNRQIRRLCRRSEFELTRLHRISVGPIVLGDVEEGSCRELTRQEVEALYK 213
            RY +LHKPRG +T+  D   +GRPTV ++ +  G+    PVGRLDFD+ G+LL TDD +L  A++ P ++       VP   KVYH+LV G +T      D L+      R  DGP         AR    +          R +P   AT  W+E+ + EG+ RQ+RR+C    + + RL R++VGP+ LG++  G  R L  +EVEAL +
Sbjct:   68 RYVMLHKPRGVLTTMYDP--QGRPTVAEICRRQGLEGLHPVGRLDFDSEGLLLLTDDGELTFALTHPRHQ-------VP---KVYHVLVRGQVTA-----DRLRRLREGVRLEDGP---------ARAATAR----------RLRPENGAT--WVEITIHEGRKRQVRRMCAAVGWRVLRLVRVAVGPLRLGNLAPGQLRPLRPEEVEALAR 241          
BLAST of mRNA_Ecto-sp6_S_contig9.18311.1 vs. uniprot
Match: K6NYC6_9FIRM (Pseudouridine synthase n=2 Tax=Thermaerobacter TaxID=73918 RepID=K6NYC6_9FIRM)

HSP 1 Score: 125 bits (313), Expect = 3.870e-29
Identity = 80/210 (38.10%), Postives = 118/210 (56.19%), Query Frame = 0
Query:    2 RYFLLHKPRGCVTSTVDDTGRGRPTVYDVAKAAGVPNFGPVGRLDFDTSGVLLFTDDYKLKKAISSPTYKGKAAVGTVPSMEKVYHLLVAGTITPEDKGMDLLQEPLHFSRKLDGPGGSWTKPAEARVLLTKTFKTGQPVPWRFKPGTVATITWIEVVLREGKNRQIRRLCRRSEFELTRLHRISVGPIVLGDVEEGSCRELTRQEVEAL 211
            RY L HKPRG VT+  D   +GRP V D  +  G+    PVGRLDFD+ G+LL TDD +L  A++ P ++          ++KVYH+LV G + P    +  L++ +      DGP         AR  + +  +         +PG      W+EVVLREG+ RQ+RR+C+   +++ RL R++VGP+ LG +  G+ R L+RQEVE+L
Sbjct:   68 RYVLFHKPRGMVTTLRDP--QGRPNVGDFCRRHGLQGLHPVGRLDFDSEGLLLLTDDGELTFALTHPRHE----------VDKVYHVLVRGDLDPAR--LRRLRDGVLLD---DGP---------ARARIARVLRP--------RPGG----GWVEVVLREGRKRQVRRMCQAVGWQVVRLVRVAVGPLRLGRLAAGAWRPLSRQEVESL 239          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig9.18311.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FV84_ECTSI1.530e-27897.67Pseudouridine synthase n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5L3F2_9PHAE2.340e-16789.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L0P5_9PHAE2.900e-6397.06PseudoU_synth_2 domain-containing protein n=1 Tax=... [more]
A0A2E7M5B4_9DELT9.870e-4340.36PseudoU_synth_2 domain-containing protein n=1 Tax=... [more]
A0A838IEP5_9DELT7.520e-3438.05Pseudouridine synthase n=1 Tax=Bradymonadaceae bac... [more]
A0A328C9E6_9DELT2.770e-3235.24Pseudouridine synthase n=9 Tax=Bradymonadales TaxI... [more]
E6SKM7_THEM76.480e-3240.48Pseudouridine synthase n=1 Tax=Thermaerobacter mar... [more]
A0A7S1FRY8_9STRA4.730e-3155.56Hypothetical protein (Fragment) n=1 Tax=Corethron ... [more]
A0A2W4K569_9FIRM1.990e-2937.74Pseudouridine synthase n=1 Tax=Firmicutes bacteriu... [more]
K6NYC6_9FIRM3.870e-2938.10Pseudouridine synthase n=2 Tax=Thermaerobacter Tax... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.70.580coord: 5..201
e-value: 9.4E-39
score: 134.8
NoneNo IPR availablePANTHERPTHR21600:SF2RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE Bcoord: 2..211
NoneNo IPR availablePANTHERPTHR21600RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE Bcoord: 2..211
IPR042092Pseudouridine synthase, RsuA/RluB/E/F, catalytic domainGENE3D3.30.70.1560coord: 67..193
e-value: 9.4E-39
score: 134.8
IPR006145Pseudouridine synthase, RsuA/RluAPFAMPF00849PseudoU_synth_2coord: 3..172
e-value: 8.3E-13
score: 48.7
IPR018496Pseudouridine synthase, RsuA/RluB/E/F, conserved sitePROSITEPS01149PSI_RSUcoord: 43..57
IPR020103Pseudouridine synthase, catalytic domain superfamilySUPERFAMILY55120Pseudouridine synthasecoord: 3..208

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig9contigEcto-sp6_S_contig9:2930051..2934637 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig9.18311.1mRNA_Ecto-sp6_S_contig9.18311.1Ectocarpus species6 EcLAC_371mRNAEcto-sp6_S_contig9 2929884..2934718 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp6_S_contig9.18311.1 ID=prot_Ecto-sp6_S_contig9.18311.1|Name=mRNA_Ecto-sp6_S_contig9.18311.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=388bp
MRYFLLHKPRGCVTSTVDDTGRGRPTVYDVAKAAGVPNFGPVGRLDFDTS
GVLLFTDDYKLKKAISSPTYKGKAAVGTVPSMEKVYHLLVAGTITPEDKG
MDLLQEPLHFSRKLDGPGGSWTKPAEARVLLTKTFKTGQPVPWRFKPGTV
ATITWIEVVLREGKNRQIRRLCRRSEFELTRLHRISVGPIVLGDVEEGSC
RELTRQEVEALYKRCLPVDPLCPTIDAVQDILHSRLSQTARRIRTTAEVE
GHRFKAREHSSATDVPQKDTPERPTAEDAEQRRAAKARDGERGCPCRTTQ
GPGRRRAKAFATEEDLASIVKRLIDFARRDLHETPAGPDGESVGPDYCPG
EKESLAQARAVPPNETHMVCGYRSSQIERLGLTYGTM*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR042092PsdUridine_s_RsuA/RluB/E/F_cat
IPR006145PsdUridine_synth_RsuA/RluA
IPR018496PsdUridine_synth_RsuA/RluB_CS
IPR020103PsdUridine_synth_cat_dom_sf