mRNA_Ecto-sp6_S_contig82.17423.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig82.17423.1
Unique NamemRNA_Ecto-sp6_S_contig82.17423.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig82.17423.1 vs. uniprot
Match: D7FZH4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZH4_ECTSI)

HSP 1 Score: 235 bits (599), Expect = 4.190e-77
Identity = 117/151 (77.48%), Postives = 125/151 (82.78%), Query Frame = 1 
Query:    1 MAGVRLRDVRWDKASGSGICHGRLPVSPGTRKASTQHGTEGTLEESRVCPTRLWVTKTKRSDGYPCRVSLAAEGGIVDRRERVYLEMLISYVKDAGTKGFLHACFWAVPPRRTFSTCFPIIW*PSLMWRFI*W*AADDHACKIT*CG-NCL 450
            MAGVRLRDVRW+KA GSGICHGRLPVSPGTR ASTQHGTEGTLEESRVCPTRLWVTKTKRSDGYPCR+SLAAEGGIVDRRERVYLEMLISYVKDAGTKGFLHACFWAVPP +  S  F ++  P+ M  F     AD   C +   G +CL
Sbjct:    1 MAGVRLRDVRWEKAPGSGICHGRLPVSPGTRNASTQHGTEGTLEESRVCPTRLWVTKTKRSDGYPCRISLAAEGGIVDRRERVYLEMLISYVKDAGTKGFLHACFWAVPPLKRGSYLFNML--PNNMVTF-----ADMALCLVVSGGRSCL 144
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig82.17423.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FZH4_ECTSI4.190e-7777.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig82contigEcto-sp6_S_contig82:322779..324096 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size461
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-23_002840.1
Cds size369
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350455.6749716-CDS-Ecto-sp6_S_contig82:322778..3228631682350455.6749716-CDS-Ecto-sp6_S_contig82:322778..322863Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig82 322779..322863 +
1682350455.686878-CDS-Ecto-sp6_S_contig82:323321..3234771682350455.686878-CDS-Ecto-sp6_S_contig82:323321..323477Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig82 323322..323477 +
1682350455.6969132-CDS-Ecto-sp6_S_contig82:323876..3240041682350455.6969132-CDS-Ecto-sp6_S_contig82:323876..324004Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig82 323877..324004 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350455.704726-UTR-Ecto-sp6_S_contig82:324004..3240961682350455.704726-UTR-Ecto-sp6_S_contig82:324004..324096Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig82 324005..324096 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig82.17423.1prot_Ecto-sp6_S_contig82.17423.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig82 322779..324004 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig82.17423.1

>prot_Ecto-sp6_S_contig82.17423.1 ID=prot_Ecto-sp6_S_contig82.17423.1|Name=mRNA_Ecto-sp6_S_contig82.17423.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=123bp
MAGVRLRDVRWDKASGSGICHGRLPVSPGTRKASTQHGTEGTLEESRVCP
TRLWVTKTKRSDGYPCRVSLAAEGGIVDRRERVYLEMLISYVKDAGTKGF
LHACFWAVPPRRTFSTCFPIIW*
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mRNA from alignment at Ecto-sp6_S_contig82:322779..324096+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig82.17423.1 ID=mRNA_Ecto-sp6_S_contig82.17423.1|Name=mRNA_Ecto-sp6_S_contig82.17423.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=1318bp|location=Sequence derived from alignment at Ecto-sp6_S_contig82:322779..324096+ (Ectocarpus species6 EcLAC_371)
ATGGCGGGCGTTCGGCTCAGGGATGTACGTTGGGACAAAGCCTCAGGTTC
CGGCATCTGTCATGGTCGGCTGCCAGTATCTCCAGGTACATGCTTCCTTT
CCTGCAACCGAAACAGGTTGATATGGTACCAACAACAACTTGTTTCGGTG
ACAGGAAGAGAAAACAAGAACGTGACAACAGTGCCAGCGAACCTGAAGGA
CGCCGGAAGCAAAGGATTCTTCAATGGACATTTCTGGGCCACCCCCGCTC
GTAAGCGTGGTCCTCGGCACGATGCTCTCATTGCCTTCCCGCTACTTCTT
TGGGGGACTGACAGTAGCTGCGGATCCGACCCCACCTGAGTAACACGACT
TCCGCTTGCTCACCTCTTCCATCAAGGCTTCTGCCTTCGACGACCAGAGG
ACCCCGGAATTGAGAGTTACCGTCCCACCACCTCGTTCTTCTCACTCACA
CTCCCTTCGTACAAGATCCCGAATCCTCGAATGTGCCCTCCGCCCTGCGC
GGAGTTGAGGCCTTTCGTGTGCCTGTCACCCACAATACCCCAGGTACACG
AAAGGCCTCAACTCAACACGGGACAGAGGGCACACTGGAGGAGTCGAGGG
TCTGTCCGACCAGATTGTGGGTGACCAAAACGAAGCGATCGGACGGCTAC
CCATGCCGGGTTTCTCTTGCCGCTGAAGGCGGAATCGTTGATCGAAGAGG
TGAGCAGGCGAAAGTTGATGTGCTCGATGGCCTCAACTCGCAACTGCTAG
CGGTGACCCGCAGAGCCGACGGGAAGGCAGACCAGATTGTACGCACGCAA
ATATCAACAACAATCGCATCGAGATTGTGCATGCGGCCCTGTATTGAAGC
GCGTACAGGCTCAGCACTTTAACAGGGTCAAAGTAGCAACAATTGGCATA
TTGTCAGGGGGAACGTGGAAGAGATAGGAGCCGCGCTCACGGGGGCGCGC
GGCCCAGAAATCCGCGTGGAAAAAGCCTTTGGTTCAGGCATCTTTCACGT
CGCTGTCGGCATGTGCAGCCACATCACGTTTCCTTCCTACGACCTAAGCG
CATTGAAAGGATTGACATCCCCATCTACGTGTTTCGGTGCACGGAAAGAA
CGGGTGTACCTGGAGATGCTGATCTCGTACGTGAAGGACGCCGGAACCAA
AGGTTTTCTCCACGCGTGTTTCTGGGCCGTGCCCCCTCGTCGTACCTTTT
CAACATGCTTCCCAATAATATGGTGACCTTCGCTGATGTGGCGCTTTATC
TAGTGGTGAGCAGCGGACGATCATGCCTGCAAGATTACATGATGTGGAAA
CTGTTTGCCCTAGAGGAA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig82:322779..324096+

>mRNA_Ecto-sp6_S_contig82.17423.1 ID=mRNA_Ecto-sp6_S_contig82.17423.1|Name=mRNA_Ecto-sp6_S_contig82.17423.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=369bp|location=Sequence derived from alignment at Ecto-sp6_S_contig82:322779..324096+ (Ectocarpus species6 EcLAC_371)
ATGGCGGGCGTTCGGCTCAGGGATGTACGTTGGGACAAAGCCTCAGGTTC
CGGCATCTGTCATGGTCGGCTGCCAGTATCTCCAGGTACACGAAAGGCCT
CAACTCAACACGGGACAGAGGGCACACTGGAGGAGTCGAGGGTCTGTCCG
ACCAGATTGTGGGTGACCAAAACGAAGCGATCGGACGGCTACCCATGCCG
GGTTTCTCTTGCCGCTGAAGGCGGAATCGTTGATCGAAGAGAACGGGTGT
ACCTGGAGATGCTGATCTCGTACGTGAAGGACGCCGGAACCAAAGGTTTT
CTCCACGCGTGTTTCTGGGCCGTGCCCCCTCGTCGTACCTTTTCAACATG
CTTCCCAATAATATGGTGA
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