mRNA_Ecto-sp6_S_contig110.1456.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig110.1456.1
Unique NamemRNA_Ecto-sp6_S_contig110.1456.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig110.1456.1 vs. uniprot
Match: D7G4I0_ECTSI (Senescence domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4I0_ECTSI)

HSP 1 Score: 662 bits (1707), Expect = 4.620e-227
Identity = 359/363 (98.90%), Postives = 361/363 (99.45%), Query Frame = 3 
Query:  729 MTSKLPPPPEKQPPLGDLPAGVPYEAILTAVGTLAEQSPSAGGGVSATGAVNVIQGRVDENPEAGFFGFLSVENLNVPLVSTSRSSRVGPGVYRVCIPGKEFLLTLDQRTEPPIVEGMENVLRWFTAFEGDEMPRGVTPAGVKATGVKGVIESAGVAGAAMIMRVGEALNASIKERTEAKLAAQADQPAKKVKLGGAVTATTLTGARKVVGAGAGVAAAVIDKVSSVAGNAVANSSIVANSRGAPEGSKRREAHDMLVTGAVALGRVWEAADGQGKLLLESTGDGMGRIAGAKYGSEAEHAARSAGQIGLDGWRIFRFPTKLGMTTLVKGAVKGATAAGSQSSSTSNVGGYVAQPAPPNPSSS 1817
            MTSKLPPPPEKQPPLGDLPAGVPYEAILTAVGTLAEQSPSAGGGVSATGAVNVIQGRVDENPEAGFFGFLSVENLNVPLVSTSRSSRVGPGVYRVCIPGKEFLLTLDQRTEPPIVEGMENVLRWFTAFEGDEMPRGVTPAGVKATGVKGVIESAGVAGAAMIMRVGEALNASIKERTEAKLAAQADQPAKKVKLGGAVTATTLTGARKVVGAGAGVAAAVIDKVS+VAGNAVANSSIVANSRGAP GS RREAHDMLVTGAVALGRVWEAADGQGKLLLESTGDGMGRIAGAKYGSEAEHAARSAGQIGLDGWRIFRFPTKLG+TTLVKGAVKGATAAGSQSSSTSNVGGYVAQPAPPNPSSS
Sbjct:    1 MTSKLPPPPEKQPPLGDLPAGVPYEAILTAVGTLAEQSPSAGGGVSATGAVNVIQGRVDENPEAGFFGFLSVENLNVPLVSTSRSSRVGPGVYRVCIPGKEFLLTLDQRTEPPIVEGMENVLRWFTAFEGDEMPRGVTPAGVKATGVKGVIESAGVAGAAMIMRVGEALNASIKERTEAKLAAQADQPAKKVKLGGAVTATTLTGARKVVGAGAGVAAAVIDKVSTVAGNAVANSSIVANSRGAPAGSTRREAHDMLVTGAVALGRVWEAADGQGKLLLESTGDGMGRIAGAKYGSEAEHAARSAGQIGLDGWRIFRFPTKLGVTTLVKGAVKGATAAGSQSSSTSNVGGYVAQPAPPNPSSS 363
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BLAST of mRNA_Ecto-sp6_S_contig110.1456.1 vs. uniprot
Match: A0A1X6P731_PORUM (Senescence domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P731_PORUM)

HSP 1 Score: 69.7 bits (169), Expect = 1.620e-8
Identity = 43/128 (33.59%), Postives = 64/128 (50.00%), Query Frame = 3 
Query: 1332 TLTGARKVVGAGAGVAAAVIDKVSSVAGNAVANSSIVANSRGAPEGSKRREAHDMLVTGAVALGRVWEAADGQGKLLLESTGDGMGRIAGAKYGSEAEHAARSAGQIGLDGWRIFRFPTKLGMTTLVK 1715
            T +G  +     AG    V  +V++  G  +A S  +  +R AP  S     H  L TG +A   ++EAAD  G+ +L +T  G   +  A+YG  A   A  AG   +  +R+ RFP+K G TT+VK
Sbjct:  239 TFSGVGRASSGVAGALTGVGHRVATAVGGGLAESGAMRRAREAPPNSVGGVFHTALSTGCLAFANIYEAADETGRAILTTTATGTTALTDARYGPRAASVAHDAGLTAVSAYRVVRFPSKFGATTVVK 366
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig110.1456.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G4I0_ECTSI4.620e-22798.90Senescence domain-containing protein n=2 Tax=Ectoc... [more]
A0A1X6P731_PORUM1.620e-833.59Senescence domain-containing protein n=1 Tax=Porph... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig110contigEcto-sp6_S_contig110:51579..55799 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size3506
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionSenescence/spartin-associated
Ec32 orthologEc-07_000540.1
Cds size1092
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348800.7926211-UTR-Ecto-sp6_S_contig110:51578..523061682348800.7926211-UTR-Ecto-sp6_S_contig110:51578..52306Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig110 51579..52306 +
1682348800.815701-UTR-Ecto-sp6_S_contig110:54113..557991682348800.815701-UTR-Ecto-sp6_S_contig110:54113..55799Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig110 54114..55799 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348800.800785-CDS-Ecto-sp6_S_contig110:52306..529301682348800.800785-CDS-Ecto-sp6_S_contig110:52306..52930Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig110 52307..52930 +
1682348800.8083408-CDS-Ecto-sp6_S_contig110:53645..541131682348800.8083408-CDS-Ecto-sp6_S_contig110:53645..54113Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig110 53646..54113 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig110.1456.1prot_Ecto-sp6_S_contig110.1456.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig110 52307..54113 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig110.1456.1

>prot_Ecto-sp6_S_contig110.1456.1 ID=prot_Ecto-sp6_S_contig110.1456.1|Name=mRNA_Ecto-sp6_S_contig110.1456.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=364bp
MTSKLPPPPEKQPPLGDLPAGVPYEAILTAVGTLAEQSPSAGGGVSATGA
VNVIQGRVDENPEAGFFGFLSVENLNVPLVSTSRSSRVGPGVYRVCIPGK
EFLLTLDQRTEPPIVEGMENVLRWFTAFEGDEMPRGVTPAGVKATGVKGV
IESAGVAGAAMIMRVGEALNASIKERTEAKLAAQADQPAKKVKLGGAVTA
TTLTGARKVVGAGAGVAAAVIDKVSSVAGNAVANSSIVANSRGAPEGSKR
REAHDMLVTGAVALGRVWEAADGQGKLLLESTGDGMGRIAGAKYGSEAEH
AARSAGQIGLDGWRIFRFPTKLGMTTLVKGAVKGATAAGSQSSSTSNVGG
YVAQPAPPNPSSS*
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mRNA from alignment at Ecto-sp6_S_contig110:51579..55799+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig110.1456.1 ID=mRNA_Ecto-sp6_S_contig110.1456.1|Name=mRNA_Ecto-sp6_S_contig110.1456.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=4221bp|location=Sequence derived from alignment at Ecto-sp6_S_contig110:51579..55799+ (Ectocarpus species6 EcLAC_371)
TGGCTCGTGCTTGTATCATAGAACATGCCATTATTTGCTCGCTCTTGCAG
TTGAACTGCAGTCACCTTCAACGCCGTTTTAAATTGAGGGCCCGCAGATC
TCCTCTGGCGCGTGCCGCTACCTTTCTGTCCTCAAAAGAGTGCGTGAACC
GCCCAACGTTGCCACTGAGTAGCACCCATCGACTCTGAGAAGGTTGAGAG
GGCAACATGAACAAGGCTGAAACACACGCGTACCGCAATCCCTTTCGAGA
ACGTCCCGGGTTTCTCATTTCTTTGTGAAAAGCAAGAACAAAATAACGTT
GCATACTCGACGGGAGGGCACGAGATTTCCAAGAAAAAATCACCTCGGGG
GGTTGAAGTCTGATTCAGTGAGAGCCCCCCAGGTGTTGCTCCAAATGTTG
CTTTTTTGGTGTTTGGAATACTTGTCAGACACACAACAGCGGGTGTCCGT
TGTGATTATTCTGACGGGACGGATACGTCTCGTCTAACCCGTAGTCCGTA
GCGTTGGAAGCTGTGTTTCGCTGTCATTTCTCTCGCGTGCAGGGCAGAGC
TCGTGCACGATGCCCTACACTGACCAAAGGAACCGCCCATCCCTTTCGTT
ACCTCTTCGGGCTTGTTTGCCTCGAACGCGATCGATTCGGCTTGCTCGTC
ACCACCGGTGCACTACCACCTCAAAATGCCCTCGCAGAAGAAGCGCGCGC
CGTCATCATCCCAGCAAAAGGACCAACCATGACGAGCAAGCTGCCGCCGC
CACCGGAGAAACAGCCGCCTCTGGGCGACCTGCCCGCGGGGGTCCCGTAC
GAGGCCATCCTCACCGCGGTGGGTACCCTGGCGGAGCAGTCCCCGTCGGC
GGGCGGCGGGGTTTCCGCCACGGGGGCGGTGAACGTGATCCAGGGGAGGG
TGGACGAGAACCCCGAGGCCGGCTTCTTCGGCTTCCTGTCCGTCGAGAAC
CTCAACGTCCCGCTCGTGTCGACGTCCCGGTCCTCGCGCGTCGGCCCGGG
CGTCTACCGCGTGTGCATCCCGGGCAAGGAGTTCCTGCTCACGCTGGACC
AGCGCACGGAGCCCCCGATTGTCGAGGGCATGGAGAACGTCCTGCGGTGG
TTCACGGCCTTTGAGGGAGACGAGATGCCCCGCGGCGTCACGCCCGCAGG
TGTCAAGGCCACCGGCGTCAAGGGCGTGATCGAGAGCGCAGGCGTGGCCG
GAGCGGCGATGATCATGCGGGTGGGCGAGGCGCTGAACGCGAGCATCAAG
GAGCGGACCGAGGCCAAGCTCGCGGCGCAGGCCGACCAGCCGGCGAAGAA
GGTCAAGCTGGGCGGGGCGGTGACCGCCACCACGCTGACCGGGGCGCGCA
AGGTGAGAACTATTCTACCGCCGTAGGTGACCAAAGATACCTCACCCCCT
GGACCGATTGTCAATGCTGGAATACTCCGCAGTCCACAGTAGAAGGAGTG
GCGGTGCCGCGTTGGAACTGTCTCGTCGAGAGATTCCCAAAAACGCACCA
TTTGAATGTGGAGTAAACGAGCTTTGAACTCCAGCCAAAGGGGTGTGGTG
TCTTGTGTCATGCCACCTAGAGTGTGTAGCCGTCTTGCCTAGAGCCGAAG
TAGTAATGGCCGCCGGGGACGGCTGGACTTGGGCTTCGGTACTAAATGAA
GGCACCTCCTGCCGTTTTTTCTTGGGAGACACGCGTGGCTTGGCACTTTT
CTTACGGCAACAGGCTCTGGGTTTTCGGGGCTCTGAAAAAATGCCCGCGC
TTGCGCACCGCGGTATTTCCGAACGTACGGGCAGCTTTCCTGTGCGCATC
TTGGCGGCTGGTGTGCTGTTGTGGTTCCCGGGTTTTTCTTGGTTCAACTG
GCATGGCTTCGTTCAGGGCGTGCTCTTCACCTGTCTGTTGTAGACGGATT
TGAGTGTTTCAAGCCTTCCTTGAAACGTGCACTCCCTCCTGCAATATATC
GTGCAACCTGCGAAAACTCGAGCGTTGTACTTGTAGCCAGGTTGACAAGT
CTTCAAATTCCTAAAACACACTGCTGTCGTTTCACATTGACATTCCATTC
CCGTCTGCCTGTTCCAGGTCGTCGGCGCCGGCGCCGGCGTCGCCGCGGCC
GTCATCGACAAGGTGTCCTCAGTGGCCGGAAACGCCGTGGCAAACAGCAG
CATTGTCGCGAACTCGCGAGGCGCTCCCGAGGGTTCCAAGAGACGAGAGG
CCCACGACATGCTCGTCACCGGGGCGGTGGCGCTCGGCCGAGTCTGGGAG
GCGGCAGACGGCCAGGGCAAGCTGCTGCTGGAGTCGACCGGCGACGGTAT
GGGACGGATCGCGGGAGCCAAGTACGGGTCGGAGGCGGAGCACGCGGCGA
GGTCGGCCGGCCAGATCGGGTTGGACGGGTGGCGCATCTTCCGGTTCCCG
ACGAAGCTAGGGATGACGACGCTCGTCAAGGGCGCCGTCAAGGGCGCTAC
CGCCGCCGGCTCGCAGTCCTCCTCGACGAGCAATGTTGGGGGGTATGTCG
CTCAGCCTGCACCGCCGAACCCCTCCAGTAGCTAGGAACTTGGGGGGAGA
AAAAGTGCGACGTGCCTTGGAAGATTACCGGGGTATCTTTGACTTCCGGG
GGCATGTTTCGGCCAGTTCTCGTCGGCTTCCAATCGATACAATAGCTGCA
ACGCGTGGCTGCTGGAGTCGACTTCGACTGGGCAGTAGTTAATTGCGTCC
CTAAGAAACAAGGCGAACATGCGGTGCTCGTTCAAAGTTTAAGATGGCCG
CTGGCCTTGCCCTACACAACAGTATAAACAGTAGAAGTAGTGTTTATTGA
ATGGGTGATAGATTTATTGTTTCGACGTCTTTCTAGCGAGAGGAGGCAAT
AGCAAAGAACGTAAATGTTACGATTGTAATCGTGCTGGATATCTAGTCTA
TACATTAGGTGACCTCTAGAATGCTTGGGAACCGGGGGCTTGCGAAGCGA
GATTCTGGGAAGTGTCAAATTTGTTTGCCTGTTCTGTGCGAAAGCATTCG
CGCTGGGTATCTGCGGCTGGCAGCAAGTGGTGCACTGGTCGTAGGAATGT
TTTTTTGTCGAGGGGGACGATTGTGAGGCCTTCGAGTGTACGTTTTGTTG
AGGTAGGAGTGCTTGTTCCGAAGTTCAAAGACGCCGTTGGAAGCCATGGC
TTCCGTCGCCGCCGGACGCCAAGAAGCTTTGTTTCCTTGTTTCGTTGTCC
TCGATACGCCGAAATATCTTTCGTGATTTGTGCGCACCACTTGCCTGCCT
GCTTTGTCCTTTGAACCGGTTACGTCTAAACCGTCGTCGCCAGAAACGTG
AACGGGCACGTCGCCGGGCATGGCCGTGGTATGCCTGGCACTAGGGTGAA
CCGACACGTCACTGCATCAAGGCATTTTACGCAGCGCGATTTTGATCGCA
CGATAGGAAATCATTTCTTATTGGGAACGCGTATTTTAATTGAGGCCCTT
TTTTTGTATGAAAGCCAACGGCACGTGCATGATGGGCGGCACCTGTTGAG
GCCAGCAGGTGGATGCTGTGGATGTGCGCAGTAGACGAAATAGGAGATGA
TTTCCAAGTCAACTTCGGCCGTCAGTCGAACCTTTAGAAGCGCCACCCCT
TCCATCGTTCGACATTGGAGAGCAGCCGTTGTTTGTGTTCCTTGGCCTGG
AATGGCACGCTGATAGCGGAATGAGTGGAGTCTCCTCTTTGTAGGCCTCC
CGCTACTTGCAGGCTGCCCTCTCCCTCCGCGAGAACAAATGGCCTGTATT
GTAGTAACGTTCTGCAAAAAATACTGTGTTCGCCCCGGGGTTCGTCGGTG
TTCTGCGTGTTGCAAAGATCCCCCCGTTGCCTTGGTTGTTTAGTCCCAGG
AGGATGGGTCTTCGCGAAATACCGTTCGCCTGTGACAGGGTGTTAACAGG
AAACCAGGGTGGTGGTGGTGGTCGTAGTAATAGTAGTCCAAAAAGTCCTT
CCGGCGATTTCCTTGGCTCTCCTTATTTTTGTCTGTTTTCTGTTTATTTC
GCAGCTTCTTTCTCCACGAAGGGCCCGAGCACCCATTGTAAAAATAAAAT
TTCCTACATACGGGTCTTTCCTTCATGGATTCGTGAACTTTTTATCGAAG
ATCAATGATGACGTAAACACCTGACAACGCGTTGGTTGCCAACGAGATGA
GTATTGCGCCCGTGGGCTGTGCTTGCGCTTTTGCGTACAGTGCCTGCCTG
AATTTCCTCTGGGGTTGCCAC
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig110:51579..55799+

>mRNA_Ecto-sp6_S_contig110.1456.1 ID=mRNA_Ecto-sp6_S_contig110.1456.1|Name=mRNA_Ecto-sp6_S_contig110.1456.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1092bp|location=Sequence derived from alignment at Ecto-sp6_S_contig110:51579..55799+ (Ectocarpus species6 EcLAC_371)
ATGACGAGCAAGCTGCCGCCGCCACCGGAGAAACAGCCGCCTCTGGGCGA
CCTGCCCGCGGGGGTCCCGTACGAGGCCATCCTCACCGCGGTGGGTACCC
TGGCGGAGCAGTCCCCGTCGGCGGGCGGCGGGGTTTCCGCCACGGGGGCG
GTGAACGTGATCCAGGGGAGGGTGGACGAGAACCCCGAGGCCGGCTTCTT
CGGCTTCCTGTCCGTCGAGAACCTCAACGTCCCGCTCGTGTCGACGTCCC
GGTCCTCGCGCGTCGGCCCGGGCGTCTACCGCGTGTGCATCCCGGGCAAG
GAGTTCCTGCTCACGCTGGACCAGCGCACGGAGCCCCCGATTGTCGAGGG
CATGGAGAACGTCCTGCGGTGGTTCACGGCCTTTGAGGGAGACGAGATGC
CCCGCGGCGTCACGCCCGCAGGTGTCAAGGCCACCGGCGTCAAGGGCGTG
ATCGAGAGCGCAGGCGTGGCCGGAGCGGCGATGATCATGCGGGTGGGCGA
GGCGCTGAACGCGAGCATCAAGGAGCGGACCGAGGCCAAGCTCGCGGCGC
AGGCCGACCAGCCGGCGAAGAAGGTCAAGCTGGGCGGGGCGGTGACCGCC
ACCACGCTGACCGGGGCGCGCAAGGTCGTCGGCGCCGGCGCCGGCGTCGC
CGCGGCCGTCATCGACAAGGTGTCCTCAGTGGCCGGAAACGCCGTGGCAA
ACAGCAGCATTGTCGCGAACTCGCGAGGCGCTCCCGAGGGTTCCAAGAGA
CGAGAGGCCCACGACATGCTCGTCACCGGGGCGGTGGCGCTCGGCCGAGT
CTGGGAGGCGGCAGACGGCCAGGGCAAGCTGCTGCTGGAGTCGACCGGCG
ACGGTATGGGACGGATCGCGGGAGCCAAGTACGGGTCGGAGGCGGAGCAC
GCGGCGAGGTCGGCCGGCCAGATCGGGTTGGACGGGTGGCGCATCTTCCG
GTTCCCGACGAAGCTAGGGATGACGACGCTCGTCAAGGGCGCCGTCAAGG
GCGCTACCGCCGCCGGCTCGCAGTCCTCCTCGACGAGCAATGTTGGGGGG
TATGTCGCTCAGCCTGCACCGCCGAACCCCTCCAGTAGCTAG
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