mRNA_Ecto-sp6_S_contig108.1164.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig108.1164.1
Unique NamemRNA_Ecto-sp6_S_contig108.1164.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig108.1164.1 vs. uniprot
Match: A0A6H5KM84_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM84_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 4.770e-28
Identity = 69/91 (75.82%), Postives = 70/91 (76.92%), Query Frame = -2 
Query:   24 ADGLARMLSRNPQAQPSSKRPRVSEDQSGEGSSAGARSASSAGDVDVIGDSGASSSTAAPTIGESTPPXXGTQXXQSPPGLDDEGDHSRVD 296
            A   ARMLSR+PQAQPS KRPRVSEDQSGEGSSA ARSASSAGDVD  G         APTIGESTPP  GTQ  QSPP LDDEGDHSRVD
Sbjct:   35 AAAFARMLSRHPQAQPSLKRPRVSEDQSGEGSSADARSASSAGDVDASGGXXXXXXXXAPTIGESTPPPAGTQQ-QSPPRLDDEGDHSRVD 124
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BLAST of mRNA_Ecto-sp6_S_contig108.1164.1 vs. uniprot
Match: A0A6H5JLU6_9PHAE (PHD-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLU6_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 1.590e-23
Identity = 52/62 (83.87%), Postives = 56/62 (90.32%), Query Frame = 1 
Query:  112 MVGAAVLDEAPESPITSTSPADDALLAPALLPSPLWSSLTRGRFDDGWACGFRESILANPSA 297
            MVGAAVLDE PE P+TSTSPADDALLA ALLPSPLWSSL+RGRFD+GWA G RESILAN +A
Sbjct:    1 MVGAAVLDEPPEPPLTSTSPADDALLASALLPSPLWSSLSRGRFDEGWAGGCRESILANAAA 62
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BLAST of mRNA_Ecto-sp6_S_contig108.1164.1 vs. uniprot
Match: A0A6H5KAE8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAE8_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 2.140e-20
Identity = 41/50 (82.00%), Postives = 43/50 (86.00%), Query Frame = 2 
Query:    2 VVPELPLHLPESGHPHRPSQEATAAVVYRREVEWTRRWLVPPCLMKHQNP 151
            VVP+L LHL ESG PHRPS+EATA VVYRREVEWTR WLVPPCLM HQ P
Sbjct:    2 VVPDLLLHLLESGPPHRPSEEATA-VVYRREVEWTRPWLVPPCLMNHQKP 50
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig108.1164.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KM84_9PHAE4.770e-2875.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JLU6_9PHAE1.590e-2383.87PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KAE8_9PHAE2.140e-2082.00Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig108contigEcto-sp6_S_contig108:516524..516820 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size299
Hectar predicted targeting categoryother localisation
Exons1
Cds size297
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348771.2678277-CDS-Ecto-sp6_S_contig108:516523..5168201682348771.2678277-CDS-Ecto-sp6_S_contig108:516523..516820Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig108 516524..516820 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig108.1164.1prot_Ecto-sp6_S_contig108.1164.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig108 516524..516820 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig108.1164.1

>prot_Ecto-sp6_S_contig108.1164.1 ID=prot_Ecto-sp6_S_contig108.1164.1|Name=mRNA_Ecto-sp6_S_contig108.1164.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=99bp
GGARASSPSTREWSPSSSKPGGDCCCCVPAGGGVDSPMVGAAVLDEAPES
PITSTSPADDALLAPALLPSPLWSSLTRGRFDDGWACGFRESILANPSA
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mRNA from alignment at Ecto-sp6_S_contig108:516524..516820+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig108.1164.1 ID=mRNA_Ecto-sp6_S_contig108.1164.1|Name=mRNA_Ecto-sp6_S_contig108.1164.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=297bp|location=Sequence derived from alignment at Ecto-sp6_S_contig108:516524..516820+ (Ectocarpus species6 EcLAC_371)
GGTGGTGCCCGAGCTTCCTCTCCATCTACCCGAGAGTGGTCACCCTCATC
GTCCAAGCCAGGAGGCGACTGCTGCTGTTGTGTACCGGCGGGAGGTGGAG
TGGACTCGCCGATGGTTGGTGCCGCCGTGCTTGATGAAGCACCAGAATCC
CCAATAACGTCGACATCGCCGGCGGATGACGCGCTTCTAGCACCCGCACT
GCTTCCCTCCCCACTCTGGTCTTCACTCACCCGTGGCCGCTTTGATGATG
GCTGGGCCTGCGGGTTCCGGGAAAGCATCCTTGCCAACCCGTCCGCC
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig108:516524..516820+

>mRNA_Ecto-sp6_S_contig108.1164.1 ID=mRNA_Ecto-sp6_S_contig108.1164.1|Name=mRNA_Ecto-sp6_S_contig108.1164.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=297bp|location=Sequence derived from alignment at Ecto-sp6_S_contig108:516524..516820+ (Ectocarpus species6 EcLAC_371)
GGTGGTGCCCGAGCTTCCTCTCCATCTACCCGAGAGTGGTCACCCTCATC
GTCCAAGCCAGGAGGCGACTGCTGCTGTTGTGTACCGGCGGGAGGTGGAG
TGGACTCGCCGATGGTTGGTGCCGCCGTGCTTGATGAAGCACCAGAATCC
CCAATAACGTCGACATCGCCGGCGGATGACGCGCTTCTAGCACCCGCACT
GCTTCCCTCCCCACTCTGGTCTTCACTCACCCGTGGCCGCTTTGATGATG
GCTGGGCCTGCGGGTTCCGGGAAAGCATCCTTGCCAACCCGTCCGCC
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