mRNA_Ecto-sp6_S_contig105.1015.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig105.1015.1
Unique NamemRNA_Ecto-sp6_S_contig105.1015.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig105.1015.1 vs. uniprot
Match: A0A6H5KBR5_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBR5_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 1.250e-14
Identity = 33/34 (97.06%), Postives = 33/34 (97.06%), Query Frame = 2 
Query:  143 RVRMDDGELSDWFFVTQGGRQGCVLSPLLFNIFF 244
            RVRMDDGELSDWFFVTQG RQGCVLSPLLFNIFF
Sbjct:   65 RVRMDDGELSDWFFVTQGVRQGCVLSPLLFNIFF 98
[Close]
BLAST of mRNA_Ecto-sp6_S_contig105.1015.1 vs. uniprot
Match: A0A6H5JCY6_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCY6_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 3.120e-14
Identity = 33/34 (97.06%), Postives = 33/34 (97.06%), Query Frame = 2 
Query:  143 RVRMDDGELSDWFFVTQGGRQGCVLSPLLFNIFF 244
            RVRMDDGELSDWFFVTQG RQGCVLSPLLFNIFF
Sbjct:   45 RVRMDDGELSDWFFVTQGVRQGCVLSPLLFNIFF 78
[Close]
BLAST of mRNA_Ecto-sp6_S_contig105.1015.1 vs. uniprot
Match: A0A6H5K1X6_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1X6_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 3.860e-14
Identity = 33/34 (97.06%), Postives = 33/34 (97.06%), Query Frame = 2 
Query:  143 RVRMDDGELSDWFFVTQGGRQGCVLSPLLFNIFF 244
            RVRMDDGELSDWFFVTQG RQGCVLSPLLFNIFF
Sbjct:   65 RVRMDDGELSDWFFVTQGVRQGCVLSPLLFNIFF 98
[Close]
BLAST of mRNA_Ecto-sp6_S_contig105.1015.1 vs. uniprot
Match: A0A6H5JUC0_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUC0_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 5.870e-14
Identity = 33/34 (97.06%), Postives = 33/34 (97.06%), Query Frame = 2 
Query:  143 RVRMDDGELSDWFFVTQGGRQGCVLSPLLFNIFF 244
            RVRMDDGELSDWFFVTQG RQGCVLSPLLFNIFF
Sbjct:   29 RVRMDDGELSDWFFVTQGVRQGCVLSPLLFNIFF 62
[Close]
BLAST of mRNA_Ecto-sp6_S_contig105.1015.1 vs. uniprot
Match: A0A6H5JHV5_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHV5_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 7.320e-14
Identity = 33/34 (97.06%), Postives = 33/34 (97.06%), Query Frame = 2 
Query:  143 RVRMDDGELSDWFFVTQGGRQGCVLSPLLFNIFF 244
            RVRMDDGELSDWFFVTQG RQGCVLSPLLFNIFF
Sbjct:   45 RVRMDDGELSDWFFVTQGVRQGCVLSPLLFNIFF 78
[Close]
BLAST of mRNA_Ecto-sp6_S_contig105.1015.1 vs. uniprot
Match: A0A6H5L732_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L732_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 7.590e-14
Identity = 33/34 (97.06%), Postives = 33/34 (97.06%), Query Frame = 2 
Query:  143 RVRMDDGELSDWFFVTQGGRQGCVLSPLLFNIFF 244
            RVRMDDGELSDWFFVTQG RQGCVLSPLLFNIFF
Sbjct:   76 RVRMDDGELSDWFFVTQGVRQGCVLSPLLFNIFF 109
[Close]
BLAST of mRNA_Ecto-sp6_S_contig105.1015.1 vs. uniprot
Match: A0A6H5JRX8_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRX8_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 1.790e-13
Identity = 33/34 (97.06%), Postives = 33/34 (97.06%), Query Frame = 2 
Query:  143 RVRMDDGELSDWFFVTQGGRQGCVLSPLLFNIFF 244
            RVRMDDGELSDWFFVTQG RQGCVLSPLLFNIFF
Sbjct:   65 RVRMDDGELSDWFFVTQGVRQGCVLSPLLFNIFF 98
[Close]
BLAST of mRNA_Ecto-sp6_S_contig105.1015.1 vs. uniprot
Match: A0A6H5JVE1_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVE1_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 2.990e-13
Identity = 33/34 (97.06%), Postives = 33/34 (97.06%), Query Frame = 2 
Query:  143 RVRMDDGELSDWFFVTQGGRQGCVLSPLLFNIFF 244
            RVRMDDGELSDWFFVTQG RQGCVLSPLLFNIFF
Sbjct:  160 RVRMDDGELSDWFFVTQGVRQGCVLSPLLFNIFF 193
[Close]
BLAST of mRNA_Ecto-sp6_S_contig105.1015.1 vs. uniprot
Match: A0A6H5JHY6_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHY6_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 3.370e-13
Identity = 32/33 (96.97%), Postives = 32/33 (96.97%), Query Frame = 2 
Query:  146 VRMDDGELSDWFFVTQGGRQGCVLSPLLFNIFF 244
            VRMDDGELSDWFFVTQG RQGCVLSPLLFNIFF
Sbjct:   66 VRMDDGELSDWFFVTQGVRQGCVLSPLLFNIFF 98
[Close]
BLAST of mRNA_Ecto-sp6_S_contig105.1015.1 vs. uniprot
Match: A0A6H5JVL0_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVL0_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 3.520e-13
Identity = 33/34 (97.06%), Postives = 33/34 (97.06%), Query Frame = 2 
Query:  143 RVRMDDGELSDWFFVTQGGRQGCVLSPLLFNIFF 244
            RVRMDDGELSDWFFVTQG RQGCVLSPLLFNIFF
Sbjct:  268 RVRMDDGELSDWFFVTQGERQGCVLSPLLFNIFF 301
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig105.1015.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KBR5_9PHAE1.250e-1497.06Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JCY6_9PHAE3.120e-1497.06Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K1X6_9PHAE3.860e-1497.06Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JUC0_9PHAE5.870e-1497.06Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JHV5_9PHAE7.320e-1497.06Reverse transcriptase domain-containing protein (F... [more]
A0A6H5L732_9PHAE7.590e-1497.06Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JRX8_9PHAE1.790e-1397.06Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JVE1_9PHAE2.990e-1397.06Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JHY6_9PHAE3.370e-1396.97Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JVL0_9PHAE3.520e-1397.06Reverse transcriptase domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig105contigEcto-sp6_S_contig105:508865..509980 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size246
Hectar predicted targeting categoryother localisation
Exons2
Cds size246
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348748.8103266-CDS-Ecto-sp6_S_contig105:508864..5090701682348748.8103266-CDS-Ecto-sp6_S_contig105:508864..509070Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig105 508865..509070 -
1682348748.8187585-CDS-Ecto-sp6_S_contig105:509940..5099801682348748.8187585-CDS-Ecto-sp6_S_contig105:509940..509980Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig105 509941..509980 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig105.1015.1prot_Ecto-sp6_S_contig105.1015.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig105 508865..509980 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig105.1015.1

>prot_Ecto-sp6_S_contig105.1015.1 ID=prot_Ecto-sp6_S_contig105.1015.1|Name=mRNA_Ecto-sp6_S_contig105.1015.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=82bp
MGSMSRFRISSTRGTVGPLLPVINDDRINSCLTCITLIKREESSVDTPGA
HGRRRTIGLVLRDTGRATRMCAVPTAVQHLLR
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mRNA from alignment at Ecto-sp6_S_contig105:508865..509980-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig105.1015.1 ID=mRNA_Ecto-sp6_S_contig105.1015.1|Name=mRNA_Ecto-sp6_S_contig105.1015.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=1116bp|location=Sequence derived from alignment at Ecto-sp6_S_contig105:508865..509980- (Ectocarpus species6 EcLAC_371)
ATGGGGAGTATGAGCAGGTTCCGAATCTCATCGACGCGAGGTGTGTTCGC
CACATGTTCGCGGTCCTGTAGCCTGTCTGTAGAATTTCTTAGTTCGAAGA
GTACCTTGCGTGACAATCAGTGATCCTAATAGTTGCGCTCGTTCATATCT
GGCGCCCACCGAATATATCTTCGCGTGACAAGTAGAGATAGGGAGGCAGT
ATCATTTCACGTGGAGACTTACAGTCACGATATAGAACGGTGGTAGTCCG
GTGGACAGGGCTAGAAATAATGGTTGCAGTCAAATCGCACTGAAATAGAG
ATATAGAGGCTCGAGAACAGAAGTGCGCGAGACCTTTGTCCTGTTTCTCA
TAGGTCATGCTGTAAGGTGCATGTCGTTAGCTGTTCGCGTTGAAGCAGAG
GCCGCAAGGAAAACTTATCAGATTAGATACCCGAGATAGCGTTTGACTCA
GCAGCCCCGATGGTGCTGTGGAGGGTGCGTACTTGAGCACCTATTTGAGA
GTGCTAGCTGAATGACGCTATTTACTCTTCCAGGTGAAGTTTGTATATTT
CGTGTCAAGGAGCACGGCGCAACTGACTGAGGTCTTCTCTATTCCTTGCC
GTTCTGCGCCTCTCTCGTGTTGCACCCAACTCCTCCAATGGTAATCACGT
GTTAGAAGGCCTGCGGAGACTCGGGGCTCTGTGGTATGAGTCCATGGCTT
GCACAAACCACGGGATCCCATGTCTTGGACTCTCATGTGCCACCCGTTAT
GTCTGTTTGGGTGTGATAGCTCAACCCTACCATCAGCCCTTCAACGGAGA
TGGAGTCCTGCTGGAAAATGGATCAATGGCCAATCCTGGAAATCCCATAG
CCTTCTTCTCGTGCCCTGCAACCCCAATTTGTGTTCGTTTGCCCATCCTT
GACACTACAGGTACTGTTGGTCCGCTATTGCCCGTCATCAACGACGACCG
CATTAACTCATGTCTGACCTGTATCACCCTCATCAAGCGGGAAGAATCAT
CTGTCGATACCCCGGGTGCGCATGGACGACGGAGAACTATCGGACTGGTT
CTTCGTGACACAGGGCGGGCGACAAGGATGTGTGCTGTCCCCACTGCTGT
TCAACATCTTCTTCGC
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig105:508865..509980-

>mRNA_Ecto-sp6_S_contig105.1015.1 ID=mRNA_Ecto-sp6_S_contig105.1015.1|Name=mRNA_Ecto-sp6_S_contig105.1015.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=246bp|location=Sequence derived from alignment at Ecto-sp6_S_contig105:508865..509980- (Ectocarpus species6 EcLAC_371)
ATGGGGAGTATGAGCAGGTTCCGAATCTCATCGACGCGAGGTACTGTTGG
TCCGCTATTGCCCGTCATCAACGACGACCGCATTAACTCATGTCTGACCT
GTATCACCCTCATCAAGCGGGAAGAATCATCTGTCGATACCCCGGGTGCG
CATGGACGACGGAGAACTATCGGACTGGTTCTTCGTGACACAGGGCGGGC
GACAAGGATGTGTGCTGTCCCCACTGCTGTTCAACATCTTCTTCGC
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