mRNA_Ecto-sp6_S_contig105.1015.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp6_S_contig105.1015.1
Unique Name	mRNA_Ecto-sp6_S_contig105.1015.1
Type	mRNA
Organism	Ectocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)

Homology

[Close]

BLAST of mRNA_Ecto-sp6_S_contig105.1015.1 vs. uniprot
Match: A0A6H5KBR5_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBR5_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 1.250e-14
Identity = 33/34 (97.06%), Postives = 33/34 (97.06%), Query Frame = 2

Query:  143 RVRMDDGELSDWFFVTQGGRQGCVLSPLLFNIFF 244
            RVRMDDGELSDWFFVTQG RQGCVLSPLLFNIFF
Sbjct:   65 RVRMDDGELSDWFFVTQGVRQGCVLSPLLFNIFF 98

[Close]

BLAST of mRNA_Ecto-sp6_S_contig105.1015.1 vs. uniprot
Match: A0A6H5JCY6_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCY6_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 3.120e-14
Identity = 33/34 (97.06%), Postives = 33/34 (97.06%), Query Frame = 2

Query:  143 RVRMDDGELSDWFFVTQGGRQGCVLSPLLFNIFF 244
            RVRMDDGELSDWFFVTQG RQGCVLSPLLFNIFF
Sbjct:   45 RVRMDDGELSDWFFVTQGVRQGCVLSPLLFNIFF 78

[Close]

BLAST of mRNA_Ecto-sp6_S_contig105.1015.1 vs. uniprot
Match: A0A6H5K1X6_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1X6_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 3.860e-14
Identity = 33/34 (97.06%), Postives = 33/34 (97.06%), Query Frame = 2

Query:  143 RVRMDDGELSDWFFVTQGGRQGCVLSPLLFNIFF 244
            RVRMDDGELSDWFFVTQG RQGCVLSPLLFNIFF
Sbjct:   65 RVRMDDGELSDWFFVTQGVRQGCVLSPLLFNIFF 98

[Close]

BLAST of mRNA_Ecto-sp6_S_contig105.1015.1 vs. uniprot
Match: A0A6H5JUC0_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUC0_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 5.870e-14
Identity = 33/34 (97.06%), Postives = 33/34 (97.06%), Query Frame = 2

Query:  143 RVRMDDGELSDWFFVTQGGRQGCVLSPLLFNIFF 244
            RVRMDDGELSDWFFVTQG RQGCVLSPLLFNIFF
Sbjct:   29 RVRMDDGELSDWFFVTQGVRQGCVLSPLLFNIFF 62

[Close]

BLAST of mRNA_Ecto-sp6_S_contig105.1015.1 vs. uniprot
Match: A0A6H5JHV5_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHV5_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 7.320e-14
Identity = 33/34 (97.06%), Postives = 33/34 (97.06%), Query Frame = 2

Query:  143 RVRMDDGELSDWFFVTQGGRQGCVLSPLLFNIFF 244
            RVRMDDGELSDWFFVTQG RQGCVLSPLLFNIFF
Sbjct:   45 RVRMDDGELSDWFFVTQGVRQGCVLSPLLFNIFF 78

[Close]

BLAST of mRNA_Ecto-sp6_S_contig105.1015.1 vs. uniprot
Match: A0A6H5L732_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L732_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 7.590e-14
Identity = 33/34 (97.06%), Postives = 33/34 (97.06%), Query Frame = 2

Query:  143 RVRMDDGELSDWFFVTQGGRQGCVLSPLLFNIFF 244
            RVRMDDGELSDWFFVTQG RQGCVLSPLLFNIFF
Sbjct:   76 RVRMDDGELSDWFFVTQGVRQGCVLSPLLFNIFF 109

[Close]

BLAST of mRNA_Ecto-sp6_S_contig105.1015.1 vs. uniprot
Match: A0A6H5JRX8_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRX8_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 1.790e-13
Identity = 33/34 (97.06%), Postives = 33/34 (97.06%), Query Frame = 2

Query:  143 RVRMDDGELSDWFFVTQGGRQGCVLSPLLFNIFF 244
            RVRMDDGELSDWFFVTQG RQGCVLSPLLFNIFF
Sbjct:   65 RVRMDDGELSDWFFVTQGVRQGCVLSPLLFNIFF 98

[Close]

BLAST of mRNA_Ecto-sp6_S_contig105.1015.1 vs. uniprot
Match: A0A6H5JVE1_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVE1_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 2.990e-13
Identity = 33/34 (97.06%), Postives = 33/34 (97.06%), Query Frame = 2

Query:  143 RVRMDDGELSDWFFVTQGGRQGCVLSPLLFNIFF 244
            RVRMDDGELSDWFFVTQG RQGCVLSPLLFNIFF
Sbjct:  160 RVRMDDGELSDWFFVTQGVRQGCVLSPLLFNIFF 193

[Close]

BLAST of mRNA_Ecto-sp6_S_contig105.1015.1 vs. uniprot
Match: A0A6H5JHY6_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHY6_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 3.370e-13
Identity = 32/33 (96.97%), Postives = 32/33 (96.97%), Query Frame = 2

Query:  146 VRMDDGELSDWFFVTQGGRQGCVLSPLLFNIFF 244
            VRMDDGELSDWFFVTQG RQGCVLSPLLFNIFF
Sbjct:   66 VRMDDGELSDWFFVTQGVRQGCVLSPLLFNIFF 98

[Close]

BLAST of mRNA_Ecto-sp6_S_contig105.1015.1 vs. uniprot
Match: A0A6H5JVL0_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVL0_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 3.520e-13
Identity = 33/34 (97.06%), Postives = 33/34 (97.06%), Query Frame = 2

Query:  143 RVRMDDGELSDWFFVTQGGRQGCVLSPLLFNIFF 244
            RVRMDDGELSDWFFVTQG RQGCVLSPLLFNIFF
Sbjct:  268 RVRMDDGELSDWFFVTQGERQGCVLSPLLFNIFF 301

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp6_S_contig105.1015.1 vs. uniprot

BLAST of mRNA_Ecto-sp6_S_contig105.1015.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25

ZOOM

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POSITION

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Match Name	E-value	Identity	Description
A0A6H5KBR5_9PHAE	1.250e-14	97.06	Reverse transcriptase domain-containing protein (F...	[more]
A0A6H5JCY6_9PHAE	3.120e-14	97.06	Reverse transcriptase domain-containing protein n=...	[more]
A0A6H5K1X6_9PHAE	3.860e-14	97.06	Reverse transcriptase domain-containing protein n=...	[more]
A0A6H5JUC0_9PHAE	5.870e-14	97.06	Reverse transcriptase domain-containing protein n=...	[more]
A0A6H5JHV5_9PHAE	7.320e-14	97.06	Reverse transcriptase domain-containing protein (F...	[more]
A0A6H5L732_9PHAE	7.590e-14	97.06	Reverse transcriptase domain-containing protein n=...	[more]
A0A6H5JRX8_9PHAE	1.790e-13	97.06	Reverse transcriptase domain-containing protein n=...	[more]
A0A6H5JVE1_9PHAE	2.990e-13	97.06	Reverse transcriptase domain-containing protein n=...	[more]
A0A6H5JHY6_9PHAE	3.370e-13	96.97	Reverse transcriptase domain-containing protein (F...	[more]
A0A6H5JVL0_9PHAE	3.520e-13	97.06	Reverse transcriptase domain-containing protein n=...	[more]

Pages

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp6_S_contig105:508865..509980-
coding sequence from alignment at Ecto-sp6_S_contig105:508865..509980-

protein sequence of mRNA_Ecto-sp6_S_contig105.1015.1

>prot_Ecto-sp6_S_contig105.1015.1 ID=prot_Ecto-sp6_S_contig105.1015.1|Name=mRNA_Ecto-sp6_S_contig105.1015.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=82bp
MGSMSRFRISSTRGTVGPLLPVINDDRINSCLTCITLIKREESSVDTPGA
HGRRRTIGLVLRDTGRATRMCAVPTAVQHLLR

mRNA from alignment at Ecto-sp6_S_contig105:508865..509980-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp6_S_contig105.1015.1 ID=mRNA_Ecto-sp6_S_contig105.1015.1|Name=mRNA_Ecto-sp6_S_contig105.1015.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=1116bp|location=Sequence derived from alignment at Ecto-sp6_S_contig105:508865..509980- (Ectocarpus species6 EcLAC_371)
ATGGGGAGTATGAGCAGGTTCCGAATCTCATCGACGCGAGGTGTGTTCGC
CACATGTTCGCGGTCCTGTAGCCTGTCTGTAGAATTTCTTAGTTCGAAGA
GTACCTTGCGTGACAATCAGTGATCCTAATAGTTGCGCTCGTTCATATCT
GGCGCCCACCGAATATATCTTCGCGTGACAAGTAGAGATAGGGAGGCAGT
ATCATTTCACGTGGAGACTTACAGTCACGATATAGAACGGTGGTAGTCCG
GTGGACAGGGCTAGAAATAATGGTTGCAGTCAAATCGCACTGAAATAGAG
ATATAGAGGCTCGAGAACAGAAGTGCGCGAGACCTTTGTCCTGTTTCTCA
TAGGTCATGCTGTAAGGTGCATGTCGTTAGCTGTTCGCGTTGAAGCAGAG
GCCGCAAGGAAAACTTATCAGATTAGATACCCGAGATAGCGTTTGACTCA
GCAGCCCCGATGGTGCTGTGGAGGGTGCGTACTTGAGCACCTATTTGAGA
GTGCTAGCTGAATGACGCTATTTACTCTTCCAGGTGAAGTTTGTATATTT
CGTGTCAAGGAGCACGGCGCAACTGACTGAGGTCTTCTCTATTCCTTGCC
GTTCTGCGCCTCTCTCGTGTTGCACCCAACTCCTCCAATGGTAATCACGT
GTTAGAAGGCCTGCGGAGACTCGGGGCTCTGTGGTATGAGTCCATGGCTT
GCACAAACCACGGGATCCCATGTCTTGGACTCTCATGTGCCACCCGTTAT
GTCTGTTTGGGTGTGATAGCTCAACCCTACCATCAGCCCTTCAACGGAGA
TGGAGTCCTGCTGGAAAATGGATCAATGGCCAATCCTGGAAATCCCATAG
CCTTCTTCTCGTGCCCTGCAACCCCAATTTGTGTTCGTTTGCCCATCCTT
GACACTACAGGTACTGTTGGTCCGCTATTGCCCGTCATCAACGACGACCG
CATTAACTCATGTCTGACCTGTATCACCCTCATCAAGCGGGAAGAATCAT
CTGTCGATACCCCGGGTGCGCATGGACGACGGAGAACTATCGGACTGGTT
CTTCGTGACACAGGGCGGGCGACAAGGATGTGTGCTGTCCCCACTGCTGT
TCAACATCTTCTTCGC

Coding sequence (CDS) from alignment at Ecto-sp6_S_contig105:508865..509980-

>mRNA_Ecto-sp6_S_contig105.1015.1 ID=mRNA_Ecto-sp6_S_contig105.1015.1|Name=mRNA_Ecto-sp6_S_contig105.1015.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=246bp|location=Sequence derived from alignment at Ecto-sp6_S_contig105:508865..509980- (Ectocarpus species6 EcLAC_371)
ATGGGGAGTATGAGCAGGTTCCGAATCTCATCGACGCGAGGTACTGTTGG
TCCGCTATTGCCCGTCATCAACGACGACCGCATTAACTCATGTCTGACCT
GTATCACCCTCATCAAGCGGGAAGAATCATCTGTCGATACCCCGGGTGCG
CATGGACGACGGAGAACTATCGGACTGGTTCTTCGTGACACAGGGCGGGC
GACAAGGATGTGTGCTGTCCCCACTGCTGTTCAACATCTTCTTCGC