mRNA_Ecto-sp6_S_contig104.962.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig104.962.1
Unique NamemRNA_Ecto-sp6_S_contig104.962.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
[Close]
BLAST of mRNA_Ecto-sp6_S_contig104.962.1 vs. uniprot
Match: D7FIS8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIS8_ECTSI)

HSP 1 Score: 198 bits (503), Expect = 5.090e-64
Identity = 102/108 (94.44%), Postives = 102/108 (94.44%), Query Frame = 1 
Query:    1 MHTSREGACGVVHGDGRSDTSVGRGRVHGKGSRPIESTTGAGSLAPGRRAPPTSSGEWSKKGSTVKRGQAPAGDGGARPRNTQLRLEGEDGGDVAGHQQGPAAAAVPD 324
            MHTSREGACGVVHGDGRSDTSVGRGRVHGKGSRPIES  GAGSLAPGRRAPPT SGEWSK GST KRGQAPAGDGGARPRNTQLRLE EDGGDVAGHQQGPAAAAVPD
Sbjct:    1 MHTSREGACGVVHGDGRSDTSVGRGRVHGKGSRPIESNPGAGSLAPGRRAPPTRSGEWSKTGSTDKRGQAPAGDGGARPRNTQLRLEEEDGGDVAGHQQGPAAAAVPD 108
[Close]
BLAST of mRNA_Ecto-sp6_S_contig104.962.1 vs. uniprot
Match: D7G1L5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1L5_ECTSI)

HSP 1 Score: 83.2 bits (204), Expect = 4.460e-19
Identity = 40/45 (88.89%), Postives = 41/45 (91.11%), Query Frame = 1 
Query:    1 MHTSREGACGVVHGDGRSDTSVGRGRVHGKGSRPIESTTGAGSLA 135
            MHTSREGACGVVHGDGRSDTSVGRGRVHGKGSRPIEST   G +A
Sbjct:    1 MHTSREGACGVVHGDGRSDTSVGRGRVHGKGSRPIESTNNWGGVA 45
[Close]
BLAST of mRNA_Ecto-sp6_S_contig104.962.1 vs. uniprot
Match: D8LQ43_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ43_ECTSI)

HSP 1 Score: 67.0 bits (162), Expect = 8.640e-13
Identity = 32/34 (94.12%), Postives = 33/34 (97.06%), Query Frame = 2 
Query:  221 MVERVLATPSFVWRERMVVTWPAINRGLQQRRCP 322
            MVERVLATPS+VWR RMVVTWPAINRGLQQRRCP
Sbjct:    1 MVERVLATPSYVWR-RMVVTWPAINRGLQQRRCP 33
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig104.962.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FIS8_ECTSI5.090e-6494.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G1L5_ECTSI4.460e-1988.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LQ43_ECTSI8.640e-1394.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig104contigEcto-sp6_S_contig104:462194..462517 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size324
Hectar predicted targeting categoryother localisation
Exons1
Cds size324
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348748.1150506-CDS-Ecto-sp6_S_contig104:462193..4625171682348748.1150506-CDS-Ecto-sp6_S_contig104:462193..462517Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig104 462194..462517 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig104.962.1prot_Ecto-sp6_S_contig104.962.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig104 462194..462517 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig104.962.1

>prot_Ecto-sp6_S_contig104.962.1 ID=prot_Ecto-sp6_S_contig104.962.1|Name=mRNA_Ecto-sp6_S_contig104.962.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=108bp
MHTSREGACGVVHGDGRSDTSVGRGRVHGKGSRPIESTTGAGSLAPGRRA
PPTSSGEWSKKGSTVKRGQAPAGDGGARPRNTQLRLEGEDGGDVAGHQQG
PAAAAVPD
back to top

mRNA from alignment at Ecto-sp6_S_contig104:462194..462517-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig104.962.1 ID=mRNA_Ecto-sp6_S_contig104.962.1|Name=mRNA_Ecto-sp6_S_contig104.962.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=324bp|location=Sequence derived from alignment at Ecto-sp6_S_contig104:462194..462517- (Ectocarpus species6 EcLAC_371)
ATGCATACAAGCAGAGAGGGTGCTTGTGGTGTGGTACACGGCGATGGGAG
ATCAGATACGAGCGTAGGCCGCGGGCGCGTCCATGGGAAGGGGAGTAGAC
CGATAGAGAGCACAACTGGGGCGGGGTCGCTCGCACCCGGCCGGAGAGCG
CCACCAACAAGCAGCGGCGAGTGGTCGAAGAAAGGGTCAACAGTCAAGCG
TGGTCAGGCGCCTGCGGGTGATGGTGGAGCGCGTCCTCGCAACACCCAGC
TTCGTCTGGAGGGAGAGGATGGTGGTGACGTGGCCGGCCATCAACAGGGG
CCTGCAGCAGCGGCGGTGCCCGAC
back to top

Coding sequence (CDS) from alignment at Ecto-sp6_S_contig104:462194..462517-

>mRNA_Ecto-sp6_S_contig104.962.1 ID=mRNA_Ecto-sp6_S_contig104.962.1|Name=mRNA_Ecto-sp6_S_contig104.962.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=324bp|location=Sequence derived from alignment at Ecto-sp6_S_contig104:462194..462517- (Ectocarpus species6 EcLAC_371)
ATGCATACAAGCAGAGAGGGTGCTTGTGGTGTGGTACACGGCGATGGGAG
ATCAGATACGAGCGTAGGCCGCGGGCGCGTCCATGGGAAGGGGAGTAGAC
CGATAGAGAGCACAACTGGGGCGGGGTCGCTCGCACCCGGCCGGAGAGCG
CCACCAACAAGCAGCGGCGAGTGGTCGAAGAAAGGGTCAACAGTCAAGCG
TGGTCAGGCGCCTGCGGGTGATGGTGGAGCGCGTCCTCGCAACACCCAGC
TTCGTCTGGAGGGAGAGGATGGTGGTGACGTGGCCGGCCATCAACAGGGG
CCTGCAGCAGCGGCGGTGCCCGAC
back to top