mRNA_Ecto-sp6_S_contig104.962.1 (mRNA) Ectocarpus species6 EcLAC_371
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig104.962.1 vs. uniprot
Match: D7FIS8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIS8_ECTSI) HSP 1 Score: 198 bits (503), Expect = 5.090e-64 Identity = 102/108 (94.44%), Postives = 102/108 (94.44%), Query Frame = 1 Query: 1 MHTSREGACGVVHGDGRSDTSVGRGRVHGKGSRPIESTTGAGSLAPGRRAPPTSSGEWSKKGSTVKRGQAPAGDGGARPRNTQLRLEGEDGGDVAGHQQGPAAAAVPD 324
MHTSREGACGVVHGDGRSDTSVGRGRVHGKGSRPIES GAGSLAPGRRAPPT SGEWSK GST KRGQAPAGDGGARPRNTQLRLE EDGGDVAGHQQGPAAAAVPD
Sbjct: 1 MHTSREGACGVVHGDGRSDTSVGRGRVHGKGSRPIESNPGAGSLAPGRRAPPTRSGEWSKTGSTDKRGQAPAGDGGARPRNTQLRLEEEDGGDVAGHQQGPAAAAVPD 108
BLAST of mRNA_Ecto-sp6_S_contig104.962.1 vs. uniprot
Match: D7G1L5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1L5_ECTSI) HSP 1 Score: 83.2 bits (204), Expect = 4.460e-19 Identity = 40/45 (88.89%), Postives = 41/45 (91.11%), Query Frame = 1 Query: 1 MHTSREGACGVVHGDGRSDTSVGRGRVHGKGSRPIESTTGAGSLA 135
MHTSREGACGVVHGDGRSDTSVGRGRVHGKGSRPIEST G +A
Sbjct: 1 MHTSREGACGVVHGDGRSDTSVGRGRVHGKGSRPIESTNNWGGVA 45
BLAST of mRNA_Ecto-sp6_S_contig104.962.1 vs. uniprot
Match: D8LQ43_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ43_ECTSI) HSP 1 Score: 67.0 bits (162), Expect = 8.640e-13 Identity = 32/34 (94.12%), Postives = 33/34 (97.06%), Query Frame = 2 Query: 221 MVERVLATPSFVWRERMVVTWPAINRGLQQRRCP 322
MVERVLATPS+VWR RMVVTWPAINRGLQQRRCP
Sbjct: 1 MVERVLATPSYVWR-RMVVTWPAINRGLQQRRCP 33 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig104.962.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig104.962.1 >prot_Ecto-sp6_S_contig104.962.1 ID=prot_Ecto-sp6_S_contig104.962.1|Name=mRNA_Ecto-sp6_S_contig104.962.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=108bp MHTSREGACGVVHGDGRSDTSVGRGRVHGKGSRPIESTTGAGSLAPGRRAback to top mRNA from alignment at Ecto-sp6_S_contig104:462194..462517- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig104.962.1 ID=mRNA_Ecto-sp6_S_contig104.962.1|Name=mRNA_Ecto-sp6_S_contig104.962.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=324bp|location=Sequence derived from alignment at Ecto-sp6_S_contig104:462194..462517- (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig104:462194..462517- >mRNA_Ecto-sp6_S_contig104.962.1 ID=mRNA_Ecto-sp6_S_contig104.962.1|Name=mRNA_Ecto-sp6_S_contig104.962.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=324bp|location=Sequence derived from alignment at Ecto-sp6_S_contig104:462194..462517- (Ectocarpus species6 EcLAC_371)back to top |