Homology
BLAST of mRNA_Ecto-sp6_S_contig102.857.1 vs. uniprot
Match:
D7G6V3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6V3_ECTSI)
HSP 1 Score: 91.3 bits (225), Expect = 1.650e-17
Identity = 56/155 (36.13%), Postives = 81/155 (52.26%), Query Frame = -2
Query: 7 MQRYSSVFARECERVERERLLRPGHGAVNIHQPIRTLGELKTDVMNVMNDTLNNWIDPVDHLD-----------VLPHMLLPQLFKECLKEVKDRHSDITAVLFPTRKTTETMRSH--LLKNHKELFFLVPSDEQNKALERILKGVSGYLCRFPF 432
+Q Y RE RL PGH AV++ QPI L +LK NVM+D+LN WI V+ + P +LP+LF EC EV+ R+ + VL + + M+ H + +HK+LF L+P ++ N A++RIL+GV YL F
Sbjct: 297 LQEYKEEVDRELSGAMVARLNNPGHDAVDLDQPIFNLEKLKEVTANVMDDSLNEWIARVNEWGDKTGGSRAGGGITPQAVLPRLFWECSDEVETRYRVVEDVL----RVVDKMKMHENMCNHHKDLFHLMPREDCNVAIQRILRGVRSYLADHSF 447
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig102.857.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 1
0 1 Expect = 1.65e-17 / Id = 36.13 Sequence D7G6V3_ECTSI
Match Name E-value Identity Description
D7G6V3_ECTSI 1.650e-17 36.13 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Stop 1 Start 1 Model size 703 Hectar predicted targeting category mitochondrion Exons 1 Cds size 360
Relationships
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1682348735.3998222-UTR-Ecto-sp6_S_contig102:337492..337835 1682348735.3998222-UTR-Ecto-sp6_S_contig102:337492..337835 Ectocarpus species6 EcLAC_371 UTR Ecto-sp6_S_contig102 337493..337835 +
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1682348735.4133937-CDS-Ecto-sp6_S_contig102:337835..338195 1682348735.4133937-CDS-Ecto-sp6_S_contig102:337835..338195 Ectocarpus species6 EcLAC_371 CDS Ecto-sp6_S_contig102 337836..338195 +
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig102.857.1
>prot_Ecto-sp6_S_contig102.857.1 ID=prot_Ecto-sp6_S_contig102.857.1|Name=mRNA_Ecto-sp6_S_contig102.857.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=120bp
MLTAPWPGRRSLSLSTLSHSRANTDEYLCIQFIPSDSIVRGSSTVDGGFA back to top mRNA from alignment at Ecto-sp6_S_contig102:337493..338195+
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig102.857.1 ID=mRNA_Ecto-sp6_S_contig102.857.1|Name=mRNA_Ecto-sp6_S_contig102.857.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=703bp|location=Sequence derived from alignment at Ecto-sp6_S_contig102:337493..338195+ (Ectocarpus species6 EcLAC_371)GTCGGGAAACGGGAACCGGCAAAGGTACCCACTGACGCCCTTTAAGATAC
GTTCCAACGCCTTGTTTTGCTCGTCGCTTGGCACAAGGAAAAATAGTTCC
TTGTGGTTCTTAAGCAGGTGGCTACGCATCGTCTCCGTCGTTTTCCTGGT
AGGAAACAGAACAGCCGTGATGTCGCTGTGGCGGTCCTTTACCTCTTTCA
GGCATTCCTTGAACAGCTGAGGCAACAACATGTGCGGGAGGACATCGAGA
TGATCCACGGGATCGATCCAGTTGTTCAAGGTGTCGTTCATCACGTTCAT
CACGTCGGTTTTCAGTTCTCCGAGGGTGCGAATAGGTTGATGG ATGTTGA
CCGCGCCATGGCCAGGACGAAGGAGTCTTTCTCTTTCCACCCTCTCGCAC
TCACGGGCAAATACGGATGAATATCTCTGCATCCAATTCATCCCTTCTGA
CAGCATAGTCCGAGGGTCTTCAACGGTGGACGGGGGATTCGCCGAAGCGT
CGGTCATCATGTTTTTGGACTCTTCGTTCACACCGGGTGCGGCCTCCCCA
ACTGTGGTGGACTCCTGCTTCATTTTCTTATTTGTTATTGTCCACCAGCG
TTGGATGACGTCGTGGGCGATGGCCGATGCTCGTTCCTTGCTCACTCCGA
CTGGGGCACACGCCAGGGTGAGTCTTGGTTCGTTCGTTCCCCCTGCAAGG
TGA back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig102:337493..338195+
>mRNA_Ecto-sp6_S_contig102.857.1 ID=mRNA_Ecto-sp6_S_contig102.857.1|Name=mRNA_Ecto-sp6_S_contig102.857.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=360bp|location=Sequence derived from alignment at Ecto-sp6_S_contig102:337493..338195+ (Ectocarpus species6 EcLAC_371) back to top