mRNA_Ecto-sp6_S_contig102.857.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig102.857.1
Unique NamemRNA_Ecto-sp6_S_contig102.857.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig102.857.1 vs. uniprot
Match: D7G6V3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6V3_ECTSI)

HSP 1 Score: 91.3 bits (225), Expect = 1.650e-17
Identity = 56/155 (36.13%), Postives = 81/155 (52.26%), Query Frame = -2 
Query:    7 MQRYSSVFARECERVERERLLRPGHGAVNIHQPIRTLGELKTDVMNVMNDTLNNWIDPVDHLD-----------VLPHMLLPQLFKECLKEVKDRHSDITAVLFPTRKTTETMRSH--LLKNHKELFFLVPSDEQNKALERILKGVSGYLCRFPF 432
            +Q Y     RE       RL  PGH AV++ QPI  L +LK    NVM+D+LN WI  V+              + P  +LP+LF EC  EV+ R+  +  VL    +  + M+ H  +  +HK+LF L+P ++ N A++RIL+GV  YL    F
Sbjct:  297 LQEYKEEVDRELSGAMVARLNNPGHDAVDLDQPIFNLEKLKEVTANVMDDSLNEWIARVNEWGDKTGGSRAGGGITPQAVLPRLFWECSDEVETRYRVVEDVL----RVVDKMKMHENMCNHHKDLFHLMPREDCNVAIQRILRGVRSYLADHSF 447
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig102.857.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G6V3_ECTSI1.650e-1736.13Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig102contigEcto-sp6_S_contig102:337493..338195 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size703
Hectar predicted targeting categorymitochondrion
Exons1
Cds size360
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348735.3998222-UTR-Ecto-sp6_S_contig102:337492..3378351682348735.3998222-UTR-Ecto-sp6_S_contig102:337492..337835Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig102 337493..337835 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348735.4133937-CDS-Ecto-sp6_S_contig102:337835..3381951682348735.4133937-CDS-Ecto-sp6_S_contig102:337835..338195Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig102 337836..338195 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig102.857.1prot_Ecto-sp6_S_contig102.857.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig102 337836..338195 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig102.857.1

>prot_Ecto-sp6_S_contig102.857.1 ID=prot_Ecto-sp6_S_contig102.857.1|Name=mRNA_Ecto-sp6_S_contig102.857.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=120bp
MLTAPWPGRRSLSLSTLSHSRANTDEYLCIQFIPSDSIVRGSSTVDGGFA
EASVIMFLDSSFTPGAASPTVVDSCFIFLFVIVHQRWMTSWAMADARSLL
TPTGAHARVSLGSFVPPAR*
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mRNA from alignment at Ecto-sp6_S_contig102:337493..338195+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig102.857.1 ID=mRNA_Ecto-sp6_S_contig102.857.1|Name=mRNA_Ecto-sp6_S_contig102.857.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=703bp|location=Sequence derived from alignment at Ecto-sp6_S_contig102:337493..338195+ (Ectocarpus species6 EcLAC_371)
GTCGGGAAACGGGAACCGGCAAAGGTACCCACTGACGCCCTTTAAGATAC
GTTCCAACGCCTTGTTTTGCTCGTCGCTTGGCACAAGGAAAAATAGTTCC
TTGTGGTTCTTAAGCAGGTGGCTACGCATCGTCTCCGTCGTTTTCCTGGT
AGGAAACAGAACAGCCGTGATGTCGCTGTGGCGGTCCTTTACCTCTTTCA
GGCATTCCTTGAACAGCTGAGGCAACAACATGTGCGGGAGGACATCGAGA
TGATCCACGGGATCGATCCAGTTGTTCAAGGTGTCGTTCATCACGTTCAT
CACGTCGGTTTTCAGTTCTCCGAGGGTGCGAATAGGTTGATGGATGTTGA
CCGCGCCATGGCCAGGACGAAGGAGTCTTTCTCTTTCCACCCTCTCGCAC
TCACGGGCAAATACGGATGAATATCTCTGCATCCAATTCATCCCTTCTGA
CAGCATAGTCCGAGGGTCTTCAACGGTGGACGGGGGATTCGCCGAAGCGT
CGGTCATCATGTTTTTGGACTCTTCGTTCACACCGGGTGCGGCCTCCCCA
ACTGTGGTGGACTCCTGCTTCATTTTCTTATTTGTTATTGTCCACCAGCG
TTGGATGACGTCGTGGGCGATGGCCGATGCTCGTTCCTTGCTCACTCCGA
CTGGGGCACACGCCAGGGTGAGTCTTGGTTCGTTCGTTCCCCCTGCAAGG
TGA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig102:337493..338195+

>mRNA_Ecto-sp6_S_contig102.857.1 ID=mRNA_Ecto-sp6_S_contig102.857.1|Name=mRNA_Ecto-sp6_S_contig102.857.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=360bp|location=Sequence derived from alignment at Ecto-sp6_S_contig102:337493..338195+ (Ectocarpus species6 EcLAC_371)
ATGTTGACCGCGCCATGGCCAGGACGAAGGAGTCTTTCTCTTTCCACCCT
CTCGCACTCACGGGCAAATACGGATGAATATCTCTGCATCCAATTCATCC
CTTCTGACAGCATAGTCCGAGGGTCTTCAACGGTGGACGGGGGATTCGCC
GAAGCGTCGGTCATCATGTTTTTGGACTCTTCGTTCACACCGGGTGCGGC
CTCCCCAACTGTGGTGGACTCCTGCTTCATTTTCTTATTTGTTATTGTCC
ACCAGCGTTGGATGACGTCGTGGGCGATGGCCGATGCTCGTTCCTTGCTC
ACTCCGACTGGGGCACACGCCAGGGTGAGTCTTGGTTCGTTCGTTCCCCC
TGCAAGGTGA
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