mRNA_Ecto-sp6_S_contig101.819.1 (mRNA) Ectocarpus species6 EcLAC_371
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig101.819.1 vs. uniprot
Match: A0A6H5JS20_9PHAE (PX domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS20_9PHAE) HSP 1 Score: 1011 bits (2613), Expect = 0.000e+0 Identity = 566/723 (78.28%), Postives = 573/723 (79.25%), Query Frame = 1 Query: 1 MAQQVSILDGEVNRNWHLVDSGGEKHLLTLFHDCMTGARAAMLDYEA---MPGSAGTTNLFNLVAGRVDIPFSMKKKSPTAKDNGRLSILRRGLTGFSYECEVNGKLVLDTTSVVQNTDYEYEVSVPATVDTGSRVSGVTWYEVHTMRKADSKGTLVHRRFRDFYALQEQVESLMKGHHLRSSLPRFPGKKSKLWTNHGDVSFVEERRKALEQYLKTLLQLPHVSTLDSTRAFLGMVGNLREFSVSWEGKELGAKLKRASEVAGGKLGVGGAGSTGPNGDGGAPPVITAVLGNGRSPPGVCPGDRLFKVNGDSTELMSLEAAWSSVARATRPVMLHFLGPILRMDSTLAPLPEAFLRHRTPPGRPLQSTGPQDGGPPLAGSFLRPSGSGGASAAGPAGAAGGVDGGQWSLRGMLPAWSREQPSKPGDGS---------------------------------------------------------------------------------------------------TLRQAPGSSFGGGGSSRGGSAWTPDMSRGSGASASSSPPGNLLGAGGAVPTPSPPREELAGSGGTSNGNSGRGPTDRPAGGGLFSAAGFGGENAVFPVSSGGSSMAASPAWPSEQSNARQGRAAGAEGRARAGESSGGRNLAVPTFSSSLDTGARLTSEVGRSGGTFVGTTTLGESGDHHGFEEEDGEEEENPFA 1863
MAQQVSILDGEVNRNWHLVDSGGEKHLLTLFHDCMTGARAAMLDYEA +PGSAGTTNLFNLVAGRVDIPFSMKKKSPTA+DNGRLSILRRGLTGFSYECEVNGKLVLDTTSVVQNT+YEYEVSVPATVDTGSRV GVTWYEVHTMRKADSKGTLVHRRFRDF+ALQEQVESLMKGHHLRSSLPRFPGKKSKLWTNHGD+SFVEERRKALEQYLKTLLQLPHVSTLDSTRAFLGMVGNLREFSVSWEGKELGAKLKRASEVAGGKLGVGGAGS GPNGDGGAPPVIT+VLGNGRSPPGVC GDRLFKVNGDSTELMSLEAAWSSVARATRPVMLHFLGPILRMDSTLAPLPEAFLRHRTPPGR L STGPQDGGP LAGSFLRPSGSGGASA GGQW LRGMLPAWSREQPSKPGDGS TLRQAPGSSFG AW PD SRGSG S SSSPPGN+LGA GAVPTP REELAGSG TSNGNS RGPTDRPA GGLFSAAG GGENA FP SSGGSSMAASPAWPSEQSNA G AAGAEGR R GESSGGRNLAVPTFSSSLDTGAR TSEVGRSGGTFVGTTTLGES DHHGFEEEDGEEEENPFA
Sbjct: 1 MAQQVSILDGEVNRNWHLVDSGGEKHLLTLFHDCMTGARAAMLDYEAKEEVPGSAGTTNLFNLVAGRVDIPFSMKKKSPTAEDNGRLSILRRGLTGFSYECEVNGKLVLDTTSVVQNTEYEYEVSVPATVDTGSRVRGVTWYEVHTMRKADSKGTLVHRRFRDFHALQEQVESLMKGHHLRSSLPRFPGKKSKLWTNHGDLSFVEERRKALEQYLKTLLQLPHVSTLDSTRAFLGMVGNLREFSVSWEGKELGAKLKRASEVAGGKLGVGGAGSAGPNGDGGAPPVITSVLGNGRSPPGVCSGDRLFKVNGDSTELMSLEAAWSSVARATRPVMLHFLGPILRMDSTLAPLPEAFLRHRTPPGRQLPSTGPQDGGPSLAGSFLRPSGSGGASAXXXXXXXXXXXGGQWRLRGMLPAWSREQPSKPGDGSALAPGGSAAPGREWNPHENPRTRIGNGVGRGGAVGPFGNGTGAAAAGRTNPANSSLFGGDATAGASGGGMGGAAKKESLFDSWRSPRAAXXXXXXXXXGTLRQAPGSSFGXXXXXXXXXAWMPDTSRGSGTSTSSSPPGNMLGAAGAVPTPPTSREELAGSGSTSNGNSVRGPTDRPARGGLFSAAGSGGENAGFPGSSGGSSMAASPAWPSEQSNAPLGGAAGAEGRVRGGESSGGRNLAVPTFSSSLDTGARFTSEVGRSGGTFVGTTTLGESDDHHGFEEEDGEEEENPFA 723
BLAST of mRNA_Ecto-sp6_S_contig101.819.1 vs. uniprot
Match: D8LMZ7_ECTSI (PX domain containing protein (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMZ7_ECTSI) HSP 1 Score: 680 bits (1755), Expect = 3.200e-242 Identity = 348/355 (98.03%), Postives = 351/355 (98.87%), Query Frame = 1 Query: 211 MKKKSPTAKDNGRLSILRRGLTGFSYECEVNGKLVLDTTSVVQNTDYEYEVSVPATVDTGSRVSGVTWYEVHTMRKADSKGTLVHRRFRDFYALQEQVESLMKGHHLRSSLPRFPGKKSKLWTNHGDVSFVEERRKALEQYLKTLLQLPHVSTLDSTRAFLGMVGNLREFSVSWEGKELGAKLKRASEVAGGKLGVGGAGSTGPNGDGGAPPVITAVLGNGRSPPGVCPGDRLFKVNGDSTELMSLEAAWSSVARATRPVMLHFLGPILRMDSTLAPLPEAFLRHRTPPGRPLQSTGPQDGGPPLAGSFLRPSGSGGASAAGPAGAAGGVDGGQWSLRGMLPAWSREQPSKPGDG 1275
MKKKSPTA+DNGRLSILRRGLTGFSYECEVNGKLVLDTTSVVQNTDYEYEVSVPATVDTGSRVSGVTWYEVHTMRKADSKGTLVHRRFRDFYALQEQVESLMKGHHLRSSLPRFPGKKSKLWTNHGD+SFVEERRKALEQYLKTLLQLPHVSTLDSTRAFLGMVGNLREFSVSWEGKELGAKLKRASEVAGGKLGVGGAGS GPNGDGGAPPVIT+VLGNGRSPPGVCPGDRLFKVNGDSTELMSLEAAWSSVARATRPVMLHFLGPILRMDSTLAPLPEAFLRHRTPPGR L ST PQDGGPPLAGSFLRPSGSGGASAAGPAGAAGGVDGGQWSLRGMLPAWSREQPSKPGDG
Sbjct: 1 MKKKSPTAEDNGRLSILRRGLTGFSYECEVNGKLVLDTTSVVQNTDYEYEVSVPATVDTGSRVSGVTWYEVHTMRKADSKGTLVHRRFRDFYALQEQVESLMKGHHLRSSLPRFPGKKSKLWTNHGDLSFVEERRKALEQYLKTLLQLPHVSTLDSTRAFLGMVGNLREFSVSWEGKELGAKLKRASEVAGGKLGVGGAGSAGPNGDGGAPPVITSVLGNGRSPPGVCPGDRLFKVNGDSTELMSLEAAWSSVARATRPVMLHFLGPILRMDSTLAPLPEAFLRHRTPPGRQLPSTAPQDGGPPLAGSFLRPSGSGGASAAGPAGAAGGVDGGQWSLRGMLPAWSREQPSKPGDG 355
BLAST of mRNA_Ecto-sp6_S_contig101.819.1 vs. uniprot
Match: A0A835YSM5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSM5_9STRA) HSP 1 Score: 233 bits (593), Expect = 1.480e-64 Identity = 137/343 (39.94%), Postives = 196/343 (57.14%), Query Frame = 1 Query: 16 SILDGEVNRNWHLVDSGGEKHLLTLFHDCMTGARAAMLDYEAMPGSAGTTNLFNLVAGRVDIPFSMKKKSPTAKDNGRLSILRRGLTGFSYECEVNGKLVLDTTSVVQNTDYEYEVSVPATVDT----GSRVSGVTWYEVHTMRKADSKGTLVHRRFRDFYALQEQVESLMKGHHLRSSLPRFPGKKSKLWTNHGDVSFVEERRKALEQYLKTLLQLPHVSTLDSTRAFLGMVGNLREFSVSWEGKELGAKLKRASEVAGGKLGVGGAG---STGPNGDGGAPP---VITAVLGNGRSPPGVCPGDRLFKVNGDSTELMSLEAAWSSVARATRPVMLHFLGPI 1014
S+ GE+NR+W +DS G +H+L+L HDC++GARA +LDY + SAGT+N NL+ G I F +K + G+L I R G+ G+ Y CEV+G+ + +TTS V N ++E++V +P++V G VTWY + R D T VHRR+ DF L +Q + +MKGHHL SLP P K L + D +F+E RR L+ YL+TLL++PHV LD+TRAFLG+VG+LRE R+ V+GG G GGAG + GDG + P + A L G +P GV GD L +V G + E SL + + +P ++H + +
Sbjct: 90 SVFSGEINRHWEFLDSAGGRHVLSLIHDCVSGARACLLDYAELKDSAGTSNCLNLLFGAAKIAFEVKATG----EWGKLEIRRSGILGYQYRCEVDGRAIRETTSKVNNQEHEFDVRIPSSVQACAYKGGDQPNVTWYLLRVRRLRDGACTEVHRRYTDFEMLHQQCDGMMKGHHLSDSLPPLPCKSPLL--DRSDAAFIESRRAELQAYLRTLLRVPHVGGLDTTRAFLGLVGDLRE---------------RSFVVSGGAAGGGGAGFALTADVQGDGLSDPHGFLTVAQLLRG-APAGVAVGDMLLRVGGATIEGKSLLQVTERLEKMPQPYLVHLISAV 410
BLAST of mRNA_Ecto-sp6_S_contig101.819.1 vs. uniprot
Match: A0A7S2DHE0_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DHE0_9STRA) HSP 1 Score: 212 bits (540), Expect = 7.000e-59 Identity = 131/364 (35.99%), Postives = 195/364 (53.57%), Query Frame = 1 Query: 7 QQVSILDGEVNRNWHLVDSGGEKHLLTLFHDCMTGARAAMLDYEAMPGSAGTTNLFNLVAGRVDIPFSMKKKSPTAKDNGRLSILRRGLTGFSYECEVNGKLVLDTTSVVQN-------TDYEYEVSV-------PATVDTGSRVS-----------------GVTWYEVHTMRKADSKGTLVHRRFRDFYALQEQVESLMKGHHLRSSLPRFPGKKSKLWTNHGDVSFVEERRKALEQYLKTLLQLPHVSTLDSTRAFLGMVGNLREFSVSWEGKELGAKLKRASEVAGGKLGVGGAGSTGPNGDGGAPPVITAVLGNGRSPPGVCPGDRLFKVNGDSTELMSLEAAWSSVARATRPVMLHFL 1005
Q VS+L GEVNR+W D G H ++L+H +TGARAAMLDYE +PGS GT+++F+ G IPFS+ S + G L+I R G+ GF Y C V G++V + T +V T +++V+ PA +D G VS V WY + +R++D T VHRRFRDF L Q+++ +GHHL+SSLP+ P K+ K +H D +F+EER+ LE +++ L+++PHV + ST FLG +LRE S+ + +++G +L +A+ D P + +V G+ + + PGD + K+NG ST M E S+ RP + HFL
Sbjct: 10 QMVSVLSGEVNRSWLFPDQDGRVHEVSLYHHTVTGARAAMLDYEELPGSLGTSSMFHTTHG---IPFSVSSTSGVITE-GSLNIHRHGVFGFRYSCLVAGRVVPECTLMVDRKTAGNDVTPQQHDVTQHGGLLPSPAIMDAGVVVSIDDXXXXXXXXXXXXELSVAWYSLRVVRRSDQATTTVHRRFRDFVELASQLQASFQGHHLQSSLPQPPRKEFKYLKDHRDPAFLEERKHHLEIFMRRLVEVPHVLHVSSTLTFLGFSNHLREMSLIFTTEKIGVRLSKAT-------------------DSDFPATVESVEGHQQGRHEIRPGDIVSKINGHSTAFMKFEEVVRSIQTIPRPFVCHFL 350
BLAST of mRNA_Ecto-sp6_S_contig101.819.1 vs. uniprot
Match: A0A4D9CLT8_9STRA (PX domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CLT8_9STRA) HSP 1 Score: 184 bits (468), Expect = 5.430e-46 Identity = 124/365 (33.97%), Postives = 184/365 (50.41%), Query Frame = 1 Query: 10 QVSILDGEVNRNWHLVDSGGEKHLLTLFHDCMTGARAAMLDYEAMPGSAGTTNLFNLVAGRVDIPFSMKKKSPTAKDNGRLSILRRGLTGFSYECEVNGKLVLDTTSVVQNTDYE-YEVSVPATVDT-GSRVSGVTWYEVHTMRKADSKGTLVHRRFRDFYALQEQVESLMKGHHLRSSLPRFPGKKSKLWTNHGDVSFVEERRKALEQYLKTLLQLPHVSTLDSTRAFLGMVGNLREFSVSWEGKELGAKLKRASEVAGGKLGVGGAGSTGPNGDGGAPPVITAV--LGNGRSPPGVCPGDRLFKVNGDS-TELMSLEAAWSSVARATRPVMLHFLGPILRMDSTLAPLPEAFLRHRTPPGRPL 1089
+ ++L GEV+R+W + G KH++ L+HD +TG R+ + E +PGS G++ F+ A ++ + G + I + GL F Y C VNG+ + T + + D E + +++ + S+ VTWYE+ R +D TLVHRR+R+F L EQV + KGHHLRSSLP PG++ KL +H D +FVEERR LE L LL +PHV + + FLG L+E SV + ++LG + R + V + V+T V G G V GD L KV G+ ++ + V+R RP+++HFL + R S FL PPG PL
Sbjct: 3 RTNVLQGEVHRSWVWLSPAGAKHVIDLWHDTVTGVRSVAVGMEEVPGSMGSSPFFSTEAHHINFTVGQDQC------RGMVIIEKAGLFSFRYTCVVNGRPLKATLQGLADEDEERFNIAILGAANAYSSKEKSVTWYELTVTRGSDGARTLVHRRYREFVCLFEQVHAAFKGHHLRSSLPELPGRQLKLLVDHNDTAFVEERRLLLETALGKLLSVPHVGAMVPVQVFLGFFDRLKEHSVIFTQRDLGLSITR-TVVPEESI------------------VVTRVKEAGPGGQKSRVMVGDTLSKVGGEPVSKFGGFDGVAFQVSRGLRPIVIHFLEAVDRNPS------HDFL----PPGEPL 332
BLAST of mRNA_Ecto-sp6_S_contig101.819.1 vs. uniprot
Match: A0A7S3M5K7_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M5K7_9STRA) HSP 1 Score: 177 bits (449), Expect = 3.260e-44 Identity = 110/337 (32.64%), Postives = 178/337 (52.82%), Query Frame = 1 Query: 13 VSILDGEVNRNWHLVDSGGEKHLLTLFHDCMTGARAAMLDYEAMPGSAGTTNLFNLVAGRVDIPFSMKKKSPTAKDNGRLSILRRGLTGFSYECEVNGKLVLDTTS-VVQNTDYEYEVSVPATVDTGSRVSG--VTWYEVHTMRKADSKGTLVHRRFRDFYALQEQVESLMKGHHLRSSLPRFPGKKSKLWTNHGDVSFVEERRKALEQYLKTLLQLPHVSTLDSTRAFLGMVGNLREFSVSWEGKELGAKLKRASEVAGGKLGVGGAGSTGPNGDGGAPPVITAVLGNGRSPPGVCPGDRLFKVNGDSTELMSLEAAWSSVARATRPVMLHFLGPI 1014
VS+ +G++ R W + G +KH+L L+HD ++G R+AMLDY+ + GS G ++L L+ + F + P G + I R G T F Y C +N + + + T V +N D ++ ++ TV T S + WY V T R D + VHRRFR+F L Q++ MKGHH+R LP P K K +T+H D SF+++R LE++L + +PHV + +AFLG++ +RE+S++++ LG L G+ G+ P + ++ GV PGD+L +VNG + + AA + + RP+++HF+ I
Sbjct: 16 VSVFEGQLTRTW-FYEHGEKKHVLNLYHDTISGVRSAMLDYQEIRGSLGNSSL--LMDSKGHRIFFTIENLP-----GYIEIKRSGWTSFVYSCCINDRDIKEATQGVPENQDVVFKPTILDTVFTVDDQSEFQIAWYVVKTTRITDGATSTVHRRFREFAELNSQIKQNMKGHHMRDVLPALPEKPLKQFTDHHDPSFIQDRCIKLERFLIAMTSIPHVGNMVCMKAFLGIMDQVREYSLAFQAPTLGLSLLPRDR----------------QGEPGSSPCVVGMIQKPEVCQGVLPGDQLSRVNGVPLQGATFAAAVARIKSTPRPMIVHFIQVI 328
BLAST of mRNA_Ecto-sp6_S_contig101.819.1 vs. uniprot
Match: A0A7S2UVB3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UVB3_9STRA) HSP 1 Score: 83.6 bits (205), Expect = 1.460e-15 Identity = 46/106 (43.40%), Postives = 66/106 (62.26%), Query Frame = 1 Query: 13 VSILDGEVNRNWHLVD-SGGEK-HLLTLFHDCMTGARAAMLDYEAMPGSAGTTNLFNLVAGRVDIPFSMKKKSPTAKDNGRLSILRRGLTGFSYECEVNGKLVLDT 324
VS+ GE+NR W VD GG+K H++TL+HD +TG R AM+DYE + GS GT+++ +G V+IPF + GR+ I + GL GF YEC V +++T
Sbjct: 2 VSLWSGELNRTWRFVDPEGGDKEHVVTLYHDTITGVRCAMMDYEEIQGSMGTSSVLMSSSG-VNIPFIAG-----GRHIGRIHIAKDGLLGFRYECWVGNTRLVET 101
BLAST of mRNA_Ecto-sp6_S_contig101.819.1 vs. uniprot
Match: A0A6T9YST3_BIGNA (Hypothetical protein n=1 Tax=Bigelowiella natans TaxID=227086 RepID=A0A6T9YST3_BIGNA) HSP 1 Score: 86.7 bits (213), Expect = 2.640e-15 Identity = 75/265 (28.30%), Postives = 109/265 (41.13%), Query Frame = 1 Query: 1 MAQQVSILDGEVNRNWHLVDSGGEKHLLTLFHDCMTGARAAMLDYEAMPGSAGTTNLFNLVAGRVDIPFSMKKKSPTAKDNGRLSILRRGLTGFSYECEVNGK----LVLDTTSVVQNTDYEYEVSVPATVDTGSRVSGVTWYEVHTMR--KADSKGTLVHRRFRDFYALQEQVESLMKGHHLRSSLPRFPGKKSKLWTNHGDVSFVEERRKALEQYLKTLLQLPHVSTLDSTRAFLGMVGNLREFSVSWEGKELGAKLKRASEV 777
M V L G V RNW +D GGE H + L H T + LD E + T + P S K L+ + GF+Y+C +G+ LV DT ++ +P + S S + +Y+V + ++ +RF DF L V S GH L S+LP P K KLWT+H + SFV++RR L +YL L + V F +F V E E + K A+++
Sbjct: 1 MGNSVGTL-GWVIRNWR-IDVGGETHWIQLRHYTPTASFELFLDGEEVASERKVTKME---------PISFSIGGADGKVTPSLATYSQITKGFTYKCTFDGQKIPELVFDTQQPESLCEHIKARLLPCAMIRKSGESKIVYYKVEVTNGDPLQKETYVLKKRFSDFEKLDHLVRSSFSGHQLMSNLPPKPSKSVKLWTDHLEKSFVQQRRGELNRYLTKLFNVKKVCANPDFANFFRKPTEEDKFHVDEETDEPDSSKKEAAKI 254
BLAST of mRNA_Ecto-sp6_S_contig101.819.1 vs. uniprot
Match: A0A7S0CUY1_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0CUY1_9EUKA) HSP 1 Score: 57.0 bits (136), Expect = 4.590e-6 Identity = 27/78 (34.62%), Postives = 47/78 (60.26%), Query Frame = 1 Query: 466 RRFRDFYALQEQVESLMKGHHLRSSLPRFPGKKSKLWTNHGDVSFVEERRKALEQYLKTLLQLPHVSTLDSTRAFLGM 699
+RF FY ++ K + LP+FP + SK++T+H D F+E+RRK L++++K L ++P +S + FLG+
Sbjct: 67 KRFNAFYGFYRKLSKDFK----KCGLPKFPPRHSKVFTDHNDPVFIEQRRKKLDKFMKELFKIPGMSNQECVLDFLGI 140 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig101.819.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig101.819.1 >prot_Ecto-sp6_S_contig101.819.1 ID=prot_Ecto-sp6_S_contig101.819.1|Name=mRNA_Ecto-sp6_S_contig101.819.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=622bp MAQQVSILDGEVNRNWHLVDSGGEKHLLTLFHDCMTGARAAMLDYEAMPGback to top mRNA from alignment at Ecto-sp6_S_contig101:536422..545679+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig101.819.1 ID=mRNA_Ecto-sp6_S_contig101.819.1|Name=mRNA_Ecto-sp6_S_contig101.819.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=9258bp|location=Sequence derived from alignment at Ecto-sp6_S_contig101:536422..545679+ (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig101:536422..545679+ >mRNA_Ecto-sp6_S_contig101.819.1 ID=mRNA_Ecto-sp6_S_contig101.819.1|Name=mRNA_Ecto-sp6_S_contig101.819.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1866bp|location=Sequence derived from alignment at Ecto-sp6_S_contig101:536422..545679+ (Ectocarpus species6 EcLAC_371)back to top |