Homology
BLAST of mRNA_Ecto-sp6_S_contig101.817.1 vs. uniprot
Match: A0A6H5JP88_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP88_9PHAE) HSP 1 Score: 673 bits (1737), Expect = 5.280e-238 Identity = 411/521 (78.89%), Postives = 422/521 (81.00%), Query Frame = 1 Query: 1 MSPPYRLPQWPPRSSAPQDPQHFKPRGGGNYYDNGSDPSHQLDDD-ATNLVTGGRDSRQQQQQCRPADDLPDESFLGVPIFRGDVVLEAEEDGGGTCSNLELSLLDDDHAAAASTTMPGGERVSPRWNSGNRAEQRATTTEPVASARQAISSSTPLRVRFAPDVGDEGTALRAAAEASPSPPPPLAARADRRGEENEDVSASGSSCFVRHRNGMHTAWRRKAAVPDNPRQPLQATVAAAPAEPPNXXXXXXXXXXXXXXKRDPVAPIRRKGVMSADQLIAQSMSSTQQQQQPVRLFLRRSRPPVSPEPAGKENVRAVAVLRETKGSIVGARRVNGSQQAFPLPWGGTHSPVTGVQLNRARPDGGGWGGREALLEVLXXXXXXRARPRSAQHVARSPPLTTRTSPGISTRXXXXXXXXXXXXXXXXXPSTPVAASA----APLSSVAIRENLARVARTSKVGTKADPVHLYRQRQELEQARTKKAAAVARSRRKPTNREGRLAGGCSAWGTGTAGGWVGVNS 1548
MSPPYRLPQWPP+SSAPQDPQHF P G+YYDNGSDPS QLDDD T LV GRDS +QQ QCRPADDL DESFLGVPIFRGDVV + EEDGGG SNLELS LDDDHAAAASTTMPGGER SP WNSGNRAEQRATTTEPV S A+SSSTP+RVRFAPDVGD GTAL AAEASPS AARADRRG+ENE V ASGSSCFVRHRNGMHTAWRRKA VPDNPRQPLQ TVAAA AEPPN XXXXXXXXXX PVRLFLRRSR PVSPEPAGKENVR AVL+ETKGS+ GARR NGSQQAFPLPWGGTHSPVTG+QLNRARPDGGGWGGREALLEVL XXXXXRARPRSAQHVARSPPLTTR SP ISTRXXXXXXXXXXXXXXXXX APLSSVAIRENLARVARTSKVGTKADPVHLYRQRQELEQARTKKAA VARSRRKPT+REGR GG S WGTGTAGGWVGVNS
Sbjct: 1 MSPPYRLPQWPPQSSAPQDPQHFNPPRRGDYYDNGSDPSRQLDDDDVTTLVADGRDSWKQQ-QCRPADDLADESFLGVPIFRGDVVRDTEEDGGG--SNLELSFLDDDHAAAASTTMPGGERASPTWNSGNRAEQRATTTEPVVSVGPAVSSSTPMRVRFAPDVGDGGTALLEAAEASPSXXXXXAARADRRGDENEHVFASGSSCFVRHRNGMHTAWRRKAVVPDNPRQPLQVTVAAARAEPPNGVIGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVRLFLRRSRLPVSPEPAGKENVRPAAVLKETKGSVAGARRANGSQQAFPLPWGGTHSPVTGMQLNRARPDGGGWGGREALLEVLTXXXXXRARPRSAQHVARSPPLTTRISPSISTRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPLSSVAIRENLARVARTSKVGTKADPVHLYRQRQELEQARTKKAAGVARSRRKPTSREGRPTGGISVWGTGTAGGWVGVNS 518
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 1 |
| Start | 1 |
| Model size | 1602 |
| Hectar predicted targeting category | other localisation |
| Exons | 1 |
| Ec32 ortholog description | Hypothetical protein |
| Ec32 ortholog | Ec-16_001200.1 |
| Cds size | 1602 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1682348734.3548129-CDS-Ecto-sp6_S_contig101:522174..523776 | 1682348734.3548129-CDS-Ecto-sp6_S_contig101:522174..523776 | Ectocarpus species6 EcLAC_371 | CDS | Ecto-sp6_S_contig101 522175..523776 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig101.817.1 >prot_Ecto-sp6_S_contig101.817.1 ID=prot_Ecto-sp6_S_contig101.817.1|Name=mRNA_Ecto-sp6_S_contig101.817.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=534bp
MSPPYRLPQWPPRSSAPQDPQHFKPRGGGNYYDNGSDPSHQLDDDATNLV
TGGRDSRQQQQQCRPADDLPDESFLGVPIFRGDVVLEAEEDGGGTCSNLE
LSLLDDDHAAAASTTMPGGERVSPRWNSGNRAEQRATTTEPVASARQAIS
SSTPLRVRFAPDVGDEGTALRAAAEASPSPPPPLAARADRRGEENEDVSA
SGSSCFVRHRNGMHTAWRRKAAVPDNPRQPLQATVAAAPAEPPNGAVGGN
NNSNNNTSKRDPVAPIRRKGVMSADQLIAQSMSSTQQQQQPVRLFLRRSR
PPVSPEPAGKENVRAVAVLRETKGSIVGARRVNGSQQAFPLPWGGTHSPV
TGVQLNRARPDGGGWGGREALLEVLTTPPPPRARPRSAQHVARSPPLTTR
TSPGISTRRAVVVVDDNTPPPRRRTPSTPVAASAAPLSSVAIRENLARVA
RTSKVGTKADPVHLYRQRQELEQARTKKAAAVARSRRKPTNREGRLAGGC
SAWGTGTAGGWVGVNSGGGRVGGGGGSGRVGLR* back to topmRNA from alignment at Ecto-sp6_S_contig101:522175..523776- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp6_S_contig101.817.1 ID=mRNA_Ecto-sp6_S_contig101.817.1|Name=mRNA_Ecto-sp6_S_contig101.817.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=1602bp|location=Sequence derived from alignment at Ecto-sp6_S_contig101:522175..523776- (Ectocarpus species6 EcLAC_371)
ATGTCACCACCCTATCGCCTCCCGCAATGGCCTCCACGATCCTCCGCACC
TCAAGACCCACAACATTTCAAACCTCGCGGTGGAGGCAACTACTACGACA
ACGGCAGCGATCCAAGCCATCAGCTGGACGACGACGCCACGAATCTAGTA
ACCGGCGGCAGGGACAGCCGGCAGCAGCAGCAGCAATGCCGTCCAGCAGA
CGACCTGCCCGACGAGTCCTTCCTGGGCGTGCCGATATTCCGAGGCGATG
TCGTACTCGAGGCTGAGGAAGATGGCGGCGGTACATGTAGCAATCTGGAG
CTGTCCTTGTTGGACGACGACCACGCCGCAGCAGCGTCGACGACGATGCC
GGGAGGCGAGAGGGTATCTCCTAGATGGAACAGCGGCAACCGTGCCGAAC
AACGAGCAACAACGACGGAACCAGTGGCTTCCGCCAGACAGGCCATCAGT
TCGTCGACCCCATTGAGGGTGCGATTTGCCCCCGACGTCGGCGATGAAGG
CACGGCGCTCCGAGCGGCGGCGGAGGCGTCGCCGTCGCCGCCACCACCAC
TGGCCGCAAGGGCAGACCGCCGAGGCGAGGAAAACGAGGATGTCTCCGCG
AGCGGGTCGTCGTGCTTTGTGCGCCATCGAAACGGCATGCACACGGCATG
GCGGCGGAAGGCGGCGGTGCCAGACAACCCGAGGCAGCCGTTGCAGGCCA
CCGTGGCGGCCGCCCCCGCAGAACCTCCGAACGGGGCTGTTGGCGGCAAC
AACAACAGCAATAACAACACCAGCAAAAGAGATCCCGTGGCACCTATACG
GAGGAAAGGCGTGATGAGTGCTGACCAGTTAATCGCGCAGTCGATGTCGT
CTACCCAGCAGCAGCAGCAGCCTGTAAGACTCTTTCTCCGGCGAAGCCGG
CCCCCAGTCTCTCCCGAACCTGCTGGAAAAGAAAACGTTCGCGCTGTGGC
CGTTCTTAGAGAAACCAAGGGCAGTATCGTGGGAGCGCGGCGGGTCAACG
GCAGCCAGCAAGCGTTCCCGCTGCCGTGGGGCGGCACTCACTCGCCCGTG
ACTGGTGTGCAGCTGAATCGGGCTAGACCGGACGGGGGAGGATGGGGAGG
AAGGGAGGCACTCCTAGAGGTACTGACCACACCGCCACCGCCACGGGCAC
GCCCGCGGTCGGCGCAACACGTTGCGCGTTCCCCGCCGCTGACCACCAGA
ACAAGCCCCGGGATTTCCACTCGGAGGGCCGTCGTCGTCGTTGACGACAA
CACCCCGCCCCCCAGGCGGCGAACGCCTTCGACGCCGGTGGCGGCGTCGG
CGGCCCCCCTGTCCTCCGTGGCGATCCGGGAGAACCTCGCCCGCGTCGCC
CGCACGAGCAAGGTCGGGACCAAGGCCGACCCGGTGCACCTGTACCGGCA
GAGGCAGGAGCTGGAGCAAGCGAGAACAAAGAAGGCCGCTGCCGTCGCCA
GGAGCAGGAGGAAGCCAACAAACCGCGAAGGGCGGCTCGCGGGTGGTTGT
TCCGCCTGGGGCACCGGCACGGCGGGGGGCTGGGTGGGGGTGAATTCGGG
CGGGGGAAGGGTGGGCGGCGGCGGCGGCAGCGGCAGGGTGGGCTTGCGGT
AG back to topCoding sequence (CDS) from alignment at Ecto-sp6_S_contig101:522175..523776- >mRNA_Ecto-sp6_S_contig101.817.1 ID=mRNA_Ecto-sp6_S_contig101.817.1|Name=mRNA_Ecto-sp6_S_contig101.817.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1602bp|location=Sequence derived from alignment at Ecto-sp6_S_contig101:522175..523776- (Ectocarpus species6 EcLAC_371)
ATGTCACCACCCTATCGCCTCCCGCAATGGCCTCCACGATCCTCCGCACC
TCAAGACCCACAACATTTCAAACCTCGCGGTGGAGGCAACTACTACGACA
ACGGCAGCGATCCAAGCCATCAGCTGGACGACGACGCCACGAATCTAGTA
ACCGGCGGCAGGGACAGCCGGCAGCAGCAGCAGCAATGCCGTCCAGCAGA
CGACCTGCCCGACGAGTCCTTCCTGGGCGTGCCGATATTCCGAGGCGATG
TCGTACTCGAGGCTGAGGAAGATGGCGGCGGTACATGTAGCAATCTGGAG
CTGTCCTTGTTGGACGACGACCACGCCGCAGCAGCGTCGACGACGATGCC
GGGAGGCGAGAGGGTATCTCCTAGATGGAACAGCGGCAACCGTGCCGAAC
AACGAGCAACAACGACGGAACCAGTGGCTTCCGCCAGACAGGCCATCAGT
TCGTCGACCCCATTGAGGGTGCGATTTGCCCCCGACGTCGGCGATGAAGG
CACGGCGCTCCGAGCGGCGGCGGAGGCGTCGCCGTCGCCGCCACCACCAC
TGGCCGCAAGGGCAGACCGCCGAGGCGAGGAAAACGAGGATGTCTCCGCG
AGCGGGTCGTCGTGCTTTGTGCGCCATCGAAACGGCATGCACACGGCATG
GCGGCGGAAGGCGGCGGTGCCAGACAACCCGAGGCAGCCGTTGCAGGCCA
CCGTGGCGGCCGCCCCCGCAGAACCTCCGAACGGGGCTGTTGGCGGCAAC
AACAACAGCAATAACAACACCAGCAAAAGAGATCCCGTGGCACCTATACG
GAGGAAAGGCGTGATGAGTGCTGACCAGTTAATCGCGCAGTCGATGTCGT
CTACCCAGCAGCAGCAGCAGCCTGTAAGACTCTTTCTCCGGCGAAGCCGG
CCCCCAGTCTCTCCCGAACCTGCTGGAAAAGAAAACGTTCGCGCTGTGGC
CGTTCTTAGAGAAACCAAGGGCAGTATCGTGGGAGCGCGGCGGGTCAACG
GCAGCCAGCAAGCGTTCCCGCTGCCGTGGGGCGGCACTCACTCGCCCGTG
ACTGGTGTGCAGCTGAATCGGGCTAGACCGGACGGGGGAGGATGGGGAGG
AAGGGAGGCACTCCTAGAGGTACTGACCACACCGCCACCGCCACGGGCAC
GCCCGCGGTCGGCGCAACACGTTGCGCGTTCCCCGCCGCTGACCACCAGA
ACAAGCCCCGGGATTTCCACTCGGAGGGCCGTCGTCGTCGTTGACGACAA
CACCCCGCCCCCCAGGCGGCGAACGCCTTCGACGCCGGTGGCGGCGTCGG
CGGCCCCCCTGTCCTCCGTGGCGATCCGGGAGAACCTCGCCCGCGTCGCC
CGCACGAGCAAGGTCGGGACCAAGGCCGACCCGGTGCACCTGTACCGGCA
GAGGCAGGAGCTGGAGCAAGCGAGAACAAAGAAGGCCGCTGCCGTCGCCA
GGAGCAGGAGGAAGCCAACAAACCGCGAAGGGCGGCTCGCGGGTGGTTGT
TCCGCCTGGGGCACCGGCACGGCGGGGGGCTGGGTGGGGGTGAATTCGGG
CGGGGGAAGGGTGGGCGGCGGCGGCGGCAGCGGCAGGGTGGGCTTGCGGT
AG back to top
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