mRNA_Ecto-sp6_S_contig101.817.1 (mRNA) Ectocarpus species6 EcLAC_371
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig101.817.1 vs. uniprot
Match: A0A6H5JP88_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP88_9PHAE) HSP 1 Score: 673 bits (1737), Expect = 5.280e-238 Identity = 411/521 (78.89%), Postives = 422/521 (81.00%), Query Frame = 1 Query: 1 MSPPYRLPQWPPRSSAPQDPQHFKPRGGGNYYDNGSDPSHQLDDD-ATNLVTGGRDSRQQQQQCRPADDLPDESFLGVPIFRGDVVLEAEEDGGGTCSNLELSLLDDDHAAAASTTMPGGERVSPRWNSGNRAEQRATTTEPVASARQAISSSTPLRVRFAPDVGDEGTALRAAAEASPSPPPPLAARADRRGEENEDVSASGSSCFVRHRNGMHTAWRRKAAVPDNPRQPLQATVAAAPAEPPNXXXXXXXXXXXXXXKRDPVAPIRRKGVMSADQLIAQSMSSTQQQQQPVRLFLRRSRPPVSPEPAGKENVRAVAVLRETKGSIVGARRVNGSQQAFPLPWGGTHSPVTGVQLNRARPDGGGWGGREALLEVLXXXXXXRARPRSAQHVARSPPLTTRTSPGISTRXXXXXXXXXXXXXXXXXPSTPVAASA----APLSSVAIRENLARVARTSKVGTKADPVHLYRQRQELEQARTKKAAAVARSRRKPTNREGRLAGGCSAWGTGTAGGWVGVNS 1548
MSPPYRLPQWPP+SSAPQDPQHF P G+YYDNGSDPS QLDDD T LV GRDS +QQ QCRPADDL DESFLGVPIFRGDVV + EEDGGG SNLELS LDDDHAAAASTTMPGGER SP WNSGNRAEQRATTTEPV S A+SSSTP+RVRFAPDVGD GTAL AAEASPS AARADRRG+ENE V ASGSSCFVRHRNGMHTAWRRKA VPDNPRQPLQ TVAAA AEPPN XXXXXXXXXX PVRLFLRRSR PVSPEPAGKENVR AVL+ETKGS+ GARR NGSQQAFPLPWGGTHSPVTG+QLNRARPDGGGWGGREALLEVL XXXXXRARPRSAQHVARSPPLTTR SP ISTRXXXXXXXXXXXXXXXXX APLSSVAIRENLARVARTSKVGTKADPVHLYRQRQELEQARTKKAA VARSRRKPT+REGR GG S WGTGTAGGWVGVNS
Sbjct: 1 MSPPYRLPQWPPQSSAPQDPQHFNPPRRGDYYDNGSDPSRQLDDDDVTTLVADGRDSWKQQ-QCRPADDLADESFLGVPIFRGDVVRDTEEDGGG--SNLELSFLDDDHAAAASTTMPGGERASPTWNSGNRAEQRATTTEPVVSVGPAVSSSTPMRVRFAPDVGDGGTALLEAAEASPSXXXXXAARADRRGDENEHVFASGSSCFVRHRNGMHTAWRRKAVVPDNPRQPLQVTVAAARAEPPNGVIGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVRLFLRRSRLPVSPEPAGKENVRPAAVLKETKGSVAGARRANGSQQAFPLPWGGTHSPVTGMQLNRARPDGGGWGGREALLEVLTXXXXXRARPRSAQHVARSPPLTTRISPSISTRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPLSSVAIRENLARVARTSKVGTKADPVHLYRQRQELEQARTKKAAGVARSRRKPTSREGRPTGGISVWGTGTAGGWVGVNS 518 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig101.817.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig101.817.1 >prot_Ecto-sp6_S_contig101.817.1 ID=prot_Ecto-sp6_S_contig101.817.1|Name=mRNA_Ecto-sp6_S_contig101.817.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=534bp MSPPYRLPQWPPRSSAPQDPQHFKPRGGGNYYDNGSDPSHQLDDDATNLVback to top mRNA from alignment at Ecto-sp6_S_contig101:522175..523776- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig101.817.1 ID=mRNA_Ecto-sp6_S_contig101.817.1|Name=mRNA_Ecto-sp6_S_contig101.817.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=1602bp|location=Sequence derived from alignment at Ecto-sp6_S_contig101:522175..523776- (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig101:522175..523776- >mRNA_Ecto-sp6_S_contig101.817.1 ID=mRNA_Ecto-sp6_S_contig101.817.1|Name=mRNA_Ecto-sp6_S_contig101.817.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1602bp|location=Sequence derived from alignment at Ecto-sp6_S_contig101:522175..523776- (Ectocarpus species6 EcLAC_371)back to top |