Homology
BLAST of mRNA_Ecto-sp6_S_contig101.795.1 vs. uniprot
Match:
D7FPM8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPM8_ECTSI)
HSP 1 Score: 404 bits (1037), Expect = 1.040e-136
Identity = 219/229 (95.63%), Postives = 220/229 (96.07%), Query Frame = 1
Query: 1 AAAAAAPPRRLSRASPHVWQRGFASRSLPSLLAPSNDGRLLGPGGRRRPPPICRTPRAPDRPWPEVRRSVSSASPPLXXXXXXXXXXXXXTAAVARAMSSYEWKNMSAQAQKANKEFGELSREEIRKAGEEEVDKVEKALKAMEPFNDVFEVRREGLEVFAELGPEVGTYWIKFDLSIYQICLMSPRSGPHRYIFDKGSGRWIGEADKHDFQGMLTGDIIQSACGIPDF 687
AAAAAAPPRRLSRASPH WQRGFASRSLPSLLAPS+DG LLGPGGRRRPPP CRTPRAPDRPWPEVRRSVSSAS XXXXXXXXXXXXX AVARAMSSYEWKNMSAQAQKANKEFGELSREEIRKAGEEEVDKVEKALKAMEPFNDVFEVRREGLEVFAELGPEVGTYWIKFDLSIYQICLMSPRSGPHRYIFDKGSGRWIGEADKHDFQGMLT DIIQSACGIPDF
Sbjct: 7 AAAAAAPPRRLSRASPHAWQRGFASRSLPSLLAPSDDGPLLGPGGRRRPPPFCRTPRAPDRPWPEVRRSVSSASXXXXXXXXXXXXXXXXXXAVARAMSSYEWKNMSAQAQKANKEFGELSREEIRKAGEEEVDKVEKALKAMEPFNDVFEVRREGLEVFAELGPEVGTYWIKFDLSIYQICLMSPRSGPHRYIFDKGSGRWIGEADKHDFQGMLTRDIIQSACGIPDF 235
BLAST of mRNA_Ecto-sp6_S_contig101.795.1 vs. uniprot
Match:
A0A835Z714_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z714_9STRA)
HSP 1 Score: 90.9 bits (224), Expect = 2.150e-18
Identity = 43/98 (43.88%), Postives = 64/98 (65.31%), Query Frame = 1
Query: 394 EVDKVEKALKAMEPFNDVFEVRREGLEVFAELGPEVGTYWIKFDLSIYQICLMSPRSGPHRYIFDKGSGRWIGEADKHDFQGMLTGDIIQSACGIPDF 687
E+++V A+ M+ N +FEV +V +LGP++GTY I+F + + L SPRSG Y++D+ + +W+G D HDF+GMLT D+IQ A G PDF
Sbjct: 13 EMERVVAAVDRMKEDNAIFEVIHADGKVSIDLGPKIGTYQIRFVHDLRVLQLSSPRSGGFMYVYDEKTRKWLGREDAHDFEGMLTRDLIQQANGYPDF 110
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig101.795.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 1.04e-136 / Id = 95.63 Expect = 2.15e-18 / Id = 43.88 Sequence D7FPM8_ECTSI A0A835Z714_9STRA
Match Name E-value Identity Description
D7FPM8_ECTSI 1.040e-136 95.63 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more] A0A835Z714_9STRA 2.150e-18 43.88 Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Taxonomic scope Eukaryota Stop 1 Start 1 Seed ortholog score 270.0 Seed ortholog evalue 5.9e-70 Seed eggNOG ortholog 2880.D7FPM8 Model size 1569 Hectar predicted targeting category other localisation Exons 3 EggNOG OGs 2C6YH@1,2S319@2759 Cds size 399 Best tax level Eukaryota Best eggNOG OG NA|NA|NA
Relationships
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1682348731.714565-UTR-Ecto-sp6_S_contig101:267214..267505 1682348731.714565-UTR-Ecto-sp6_S_contig101:267214..267505 Ectocarpus species6 EcLAC_371 UTR Ecto-sp6_S_contig101 267215..267505 + 1682348731.747698-UTR-Ecto-sp6_S_contig101:268500..269379 1682348731.747698-UTR-Ecto-sp6_S_contig101:268500..269379 Ectocarpus species6 EcLAC_371 UTR Ecto-sp6_S_contig101 268501..269379 +
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1682348731.7227468-CDS-Ecto-sp6_S_contig101:267505..267667 1682348731.7227468-CDS-Ecto-sp6_S_contig101:267505..267667 Ectocarpus species6 EcLAC_371 CDS Ecto-sp6_S_contig101 267506..267667 + 1682348731.7302046-CDS-Ecto-sp6_S_contig101:267943..268089 1682348731.7302046-CDS-Ecto-sp6_S_contig101:267943..268089 Ectocarpus species6 EcLAC_371 CDS Ecto-sp6_S_contig101 267944..268089 + 1682348731.7374318-CDS-Ecto-sp6_S_contig101:268409..268500 1682348731.7374318-CDS-Ecto-sp6_S_contig101:268409..268500 Ectocarpus species6 EcLAC_371 CDS Ecto-sp6_S_contig101 268410..268500 +
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig101.795.1
>prot_Ecto-sp6_S_contig101.795.1 ID=prot_Ecto-sp6_S_contig101.795.1|Name=mRNA_Ecto-sp6_S_contig101.795.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=133bp
MSSYEWKNMSAQAQKANKEFGELSREEIRKAGEEEVDKVEKALKAMEPFN back to top mRNA from alignment at Ecto-sp6_S_contig101:267215..269379+
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig101.795.1 ID=mRNA_Ecto-sp6_S_contig101.795.1|Name=mRNA_Ecto-sp6_S_contig101.795.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=2165bp|location=Sequence derived from alignment at Ecto-sp6_S_contig101:267215..269379+ (Ectocarpus species6 EcLAC_371)GCAGCAGCGGCAGCAGCACCACCGAGGAGGCTATCGCGCGCCTCTCCGCA
CGTATGGCAAAGAGGGTTCGCATCGCGCTCGTTGCCATCGCTTCTTGCAC
CATCAAACGACGGTCGCCTTTTAGGGCCCGGTGGCCGGCGGCGGCCGCCG
CCAATCTGCCGCACCCCTCGAGCCCCCGACCGCCCATGGCCAGAGGTGCG
CCGCTCCGTTTCATCTGCATCCCCCCCGCTTGTTTCTTCGGAGAGAAGAG
GGGGAACAACGACGACGGCCACGGCGGCGGTGGCACGGGCC ATGTCGTCG
TACGAGTGGAAGAACATGAGCGCGCAGGCCCAGAAGGCCAACAAGGAATT
CGGTGAGCTGTCCAGGGAGGAGATTCGCAAGGCCGGAGAGGAAGAAGTCG
ACAAGGTCGAGAAGGCCCTCAAGGCCATGGAGCCTTTCAACGATGTCTTC
GAG GTAAGGGGAGAACGGGGGCGCACCCGTCCTTTGCAAAAGATGCCCTC
GGCCTTTCTGTTGCAGTAACTGTATGATCTGGGGGTGTTTTTCCTTTCTC
CTTGAATGAAGGAGTCACGGTGGCCCTGGCCAATCGACAGGAAATCTGAC
GACCATATAACAGTCTAATAGTCCAAGTGTGTCTTTATTGGCATGGGCCC
CACGATTTGAGGCGAGACCATTGTCCCAAGATTCTCCCGTTGTGGACGCT
GAGTTGAGAGCATCCGTTTTGCCTCACAGGTGCGACGGGAGGGGCTGGAA
GTTTTTGCGGAGCTTGGGCCAGAGGTCGGCACGTACTGGATCAAGTTCGA
CCTCAGCATTTATCAGATTTGCCTCATGTCACCGAGGTCGGGGCCGCACC
GGTACATCTTCGACAAGGGGTCAGG GTGAGCTCCTGGGTTGGGGACGGAG
AGAGAACGCGACATTCGTGCTGGCGTTTTGGGTCTCTTTGCTTCTCTTGT
TCGTGCTGTCGTTGGTTGGTGTTGTTGTCACCGTCGTCGTTGACGTTGTG
CTCCGCCACAGAACGCGTTTGATCACGGCTACATAGAAGCTGAGAAACAC
TATGTAGACCGTCGCTCCCAGCACGCTTTTTGTATGTCACACGCCCAACT
TGAACTAGCTTGATGCGTTGCTTCTGCCGACATCACTCATCGTTGTCATG
TTCCAACTCATCATCCTCCGCTTCTCTCAACTGCCGAAACCGCAGACGGT
GGATCGGGGAAGCAGACAAACATGACTTTCAGGGGATGCTCACTGGAGAC
ATAATTCAGTCCGCTTGTGGCATCCCCGACTTCTGA AGACGGCGGGCTGT
ATGCCGTAGTGTCGGGGAGACAAAACAACGTTGAATGTTGGGGCTAGGGG
TTGTGTCGATGTCTTCGTGGTGTATGGTTCGTTCGTGCCCCTCGCGCACC
GCGGACAATATTGGAATGGACGTGACGGCTGAACTTGTCGTGTTGTTTGT
GCCCCCGTCGCCTGAAACCTTGCATTGAACCTCTCAGACGGTGGATAGGA
GAGGCGGACAAGCATGACTTTCAAGGGATGCTGACACGCGATATAATTCA
GTCCGCGTGTGGCATTCCCGACTTCTGATTAGCTGATGGCGACGCGCCAA
AAACCGTGAATGACCTGGTGCCGTGCGGTCTAGAAAAGCCCTTGGTCCTC
AGGGGTGGTGGGGTGTCGAGGGGGGTAGCATGGCTGTAACGGCATTTGCA
TTGAGTAGCTCGAACACGCGTATATTTTGCGTTGTGATGTTGTTTGTGTT
CTTCGTGGTGTTGTCTGCGTGGACAACTACGATACATGCATGTGGTGGTG
TGGATGTCGTACGACGCGGCGCGAACATTATGGGCCCCGTAGCGTTCGTT
AGAGCCATCCATGCTATCGCAGTGACCCAGGACAAATTCCAACGGACGCT
GTCTTGTGTGTTGAGCGTGCGATCCAGCGTGCGGAGAGGCTGCTATTGAT
CACGTGCCTTGAAACTGAAGCATGCGTGTAGACGGAGCTCAACCGAGATA
ATTCACAGTCGAGGTAACACTGAGCGTGTCAAAAGCGTTTCAGACGTTTC
GGGACAGCGGACGCTGCTTGCTGCACATGTGTTTTACCCAAGAGAAAAAC
GTATGTTGTTCCTAGTGTTTCATCTTCAATTTTTCATTGCCTCGTAAGAA
ACGTCTTTCCAGCGC back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig101:267215..269379+
>mRNA_Ecto-sp6_S_contig101.795.1 ID=mRNA_Ecto-sp6_S_contig101.795.1|Name=mRNA_Ecto-sp6_S_contig101.795.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=399bp|location=Sequence derived from alignment at Ecto-sp6_S_contig101:267215..269379+ (Ectocarpus species6 EcLAC_371) back to top