mRNA_Ecto-sp6_S_contig101.795.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig101.795.1
Unique NamemRNA_Ecto-sp6_S_contig101.795.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig101.795.1 vs. uniprot
Match: D7FPM8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPM8_ECTSI)

HSP 1 Score: 404 bits (1037), Expect = 1.040e-136
Identity = 219/229 (95.63%), Postives = 220/229 (96.07%), Query Frame = 1 
Query:    1 AAAAAAPPRRLSRASPHVWQRGFASRSLPSLLAPSNDGRLLGPGGRRRPPPICRTPRAPDRPWPEVRRSVSSASPPLXXXXXXXXXXXXXTAAVARAMSSYEWKNMSAQAQKANKEFGELSREEIRKAGEEEVDKVEKALKAMEPFNDVFEVRREGLEVFAELGPEVGTYWIKFDLSIYQICLMSPRSGPHRYIFDKGSGRWIGEADKHDFQGMLTGDIIQSACGIPDF 687
            AAAAAAPPRRLSRASPH WQRGFASRSLPSLLAPS+DG LLGPGGRRRPPP CRTPRAPDRPWPEVRRSVSSAS   XXXXXXXXXXXXX  AVARAMSSYEWKNMSAQAQKANKEFGELSREEIRKAGEEEVDKVEKALKAMEPFNDVFEVRREGLEVFAELGPEVGTYWIKFDLSIYQICLMSPRSGPHRYIFDKGSGRWIGEADKHDFQGMLT DIIQSACGIPDF
Sbjct:    7 AAAAAAPPRRLSRASPHAWQRGFASRSLPSLLAPSDDGPLLGPGGRRRPPPFCRTPRAPDRPWPEVRRSVSSASXXXXXXXXXXXXXXXXXXAVARAMSSYEWKNMSAQAQKANKEFGELSREEIRKAGEEEVDKVEKALKAMEPFNDVFEVRREGLEVFAELGPEVGTYWIKFDLSIYQICLMSPRSGPHRYIFDKGSGRWIGEADKHDFQGMLTRDIIQSACGIPDF 235
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BLAST of mRNA_Ecto-sp6_S_contig101.795.1 vs. uniprot
Match: A0A835Z714_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z714_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 2.150e-18
Identity = 43/98 (43.88%), Postives = 64/98 (65.31%), Query Frame = 1 
Query:  394 EVDKVEKALKAMEPFNDVFEVRREGLEVFAELGPEVGTYWIKFDLSIYQICLMSPRSGPHRYIFDKGSGRWIGEADKHDFQGMLTGDIIQSACGIPDF 687
            E+++V  A+  M+  N +FEV     +V  +LGP++GTY I+F   +  + L SPRSG   Y++D+ + +W+G  D HDF+GMLT D+IQ A G PDF
Sbjct:   13 EMERVVAAVDRMKEDNAIFEVIHADGKVSIDLGPKIGTYQIRFVHDLRVLQLSSPRSGGFMYVYDEKTRKWLGREDAHDFEGMLTRDLIQQANGYPDF 110
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig101.795.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FPM8_ECTSI1.040e-13695.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z714_9STRA2.150e-1843.88Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig101contigEcto-sp6_S_contig101:267215..269379 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score270.0
Seed ortholog evalue5.9e-70
Seed eggNOG ortholog2880.D7FPM8
Model size1569
Hectar predicted targeting categoryother localisation
Exons3
EggNOG OGs2C6YH@1,2S319@2759
Cds size399
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348731.714565-UTR-Ecto-sp6_S_contig101:267214..2675051682348731.714565-UTR-Ecto-sp6_S_contig101:267214..267505Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig101 267215..267505 +
1682348731.747698-UTR-Ecto-sp6_S_contig101:268500..2693791682348731.747698-UTR-Ecto-sp6_S_contig101:268500..269379Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig101 268501..269379 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348731.7227468-CDS-Ecto-sp6_S_contig101:267505..2676671682348731.7227468-CDS-Ecto-sp6_S_contig101:267505..267667Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig101 267506..267667 +
1682348731.7302046-CDS-Ecto-sp6_S_contig101:267943..2680891682348731.7302046-CDS-Ecto-sp6_S_contig101:267943..268089Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig101 267944..268089 +
1682348731.7374318-CDS-Ecto-sp6_S_contig101:268409..2685001682348731.7374318-CDS-Ecto-sp6_S_contig101:268409..268500Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig101 268410..268500 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig101.795.1prot_Ecto-sp6_S_contig101.795.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig101 267506..268500 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig101.795.1

>prot_Ecto-sp6_S_contig101.795.1 ID=prot_Ecto-sp6_S_contig101.795.1|Name=mRNA_Ecto-sp6_S_contig101.795.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=133bp
MSSYEWKNMSAQAQKANKEFGELSREEIRKAGEEEVDKVEKALKAMEPFN
DVFEVRREGLEVFAELGPEVGTYWIKFDLSIYQICLMSPRSGPHRYIFDK
GSGRWIGEADKHDFQGMLTGDIIQSACGIPDF*
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mRNA from alignment at Ecto-sp6_S_contig101:267215..269379+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig101.795.1 ID=mRNA_Ecto-sp6_S_contig101.795.1|Name=mRNA_Ecto-sp6_S_contig101.795.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=2165bp|location=Sequence derived from alignment at Ecto-sp6_S_contig101:267215..269379+ (Ectocarpus species6 EcLAC_371)
GCAGCAGCGGCAGCAGCACCACCGAGGAGGCTATCGCGCGCCTCTCCGCA
CGTATGGCAAAGAGGGTTCGCATCGCGCTCGTTGCCATCGCTTCTTGCAC
CATCAAACGACGGTCGCCTTTTAGGGCCCGGTGGCCGGCGGCGGCCGCCG
CCAATCTGCCGCACCCCTCGAGCCCCCGACCGCCCATGGCCAGAGGTGCG
CCGCTCCGTTTCATCTGCATCCCCCCCGCTTGTTTCTTCGGAGAGAAGAG
GGGGAACAACGACGACGGCCACGGCGGCGGTGGCACGGGCCATGTCGTCG
TACGAGTGGAAGAACATGAGCGCGCAGGCCCAGAAGGCCAACAAGGAATT
CGGTGAGCTGTCCAGGGAGGAGATTCGCAAGGCCGGAGAGGAAGAAGTCG
ACAAGGTCGAGAAGGCCCTCAAGGCCATGGAGCCTTTCAACGATGTCTTC
GAGGTAAGGGGAGAACGGGGGCGCACCCGTCCTTTGCAAAAGATGCCCTC
GGCCTTTCTGTTGCAGTAACTGTATGATCTGGGGGTGTTTTTCCTTTCTC
CTTGAATGAAGGAGTCACGGTGGCCCTGGCCAATCGACAGGAAATCTGAC
GACCATATAACAGTCTAATAGTCCAAGTGTGTCTTTATTGGCATGGGCCC
CACGATTTGAGGCGAGACCATTGTCCCAAGATTCTCCCGTTGTGGACGCT
GAGTTGAGAGCATCCGTTTTGCCTCACAGGTGCGACGGGAGGGGCTGGAA
GTTTTTGCGGAGCTTGGGCCAGAGGTCGGCACGTACTGGATCAAGTTCGA
CCTCAGCATTTATCAGATTTGCCTCATGTCACCGAGGTCGGGGCCGCACC
GGTACATCTTCGACAAGGGGTCAGGGTGAGCTCCTGGGTTGGGGACGGAG
AGAGAACGCGACATTCGTGCTGGCGTTTTGGGTCTCTTTGCTTCTCTTGT
TCGTGCTGTCGTTGGTTGGTGTTGTTGTCACCGTCGTCGTTGACGTTGTG
CTCCGCCACAGAACGCGTTTGATCACGGCTACATAGAAGCTGAGAAACAC
TATGTAGACCGTCGCTCCCAGCACGCTTTTTGTATGTCACACGCCCAACT
TGAACTAGCTTGATGCGTTGCTTCTGCCGACATCACTCATCGTTGTCATG
TTCCAACTCATCATCCTCCGCTTCTCTCAACTGCCGAAACCGCAGACGGT
GGATCGGGGAAGCAGACAAACATGACTTTCAGGGGATGCTCACTGGAGAC
ATAATTCAGTCCGCTTGTGGCATCCCCGACTTCTGAAGACGGCGGGCTGT
ATGCCGTAGTGTCGGGGAGACAAAACAACGTTGAATGTTGGGGCTAGGGG
TTGTGTCGATGTCTTCGTGGTGTATGGTTCGTTCGTGCCCCTCGCGCACC
GCGGACAATATTGGAATGGACGTGACGGCTGAACTTGTCGTGTTGTTTGT
GCCCCCGTCGCCTGAAACCTTGCATTGAACCTCTCAGACGGTGGATAGGA
GAGGCGGACAAGCATGACTTTCAAGGGATGCTGACACGCGATATAATTCA
GTCCGCGTGTGGCATTCCCGACTTCTGATTAGCTGATGGCGACGCGCCAA
AAACCGTGAATGACCTGGTGCCGTGCGGTCTAGAAAAGCCCTTGGTCCTC
AGGGGTGGTGGGGTGTCGAGGGGGGTAGCATGGCTGTAACGGCATTTGCA
TTGAGTAGCTCGAACACGCGTATATTTTGCGTTGTGATGTTGTTTGTGTT
CTTCGTGGTGTTGTCTGCGTGGACAACTACGATACATGCATGTGGTGGTG
TGGATGTCGTACGACGCGGCGCGAACATTATGGGCCCCGTAGCGTTCGTT
AGAGCCATCCATGCTATCGCAGTGACCCAGGACAAATTCCAACGGACGCT
GTCTTGTGTGTTGAGCGTGCGATCCAGCGTGCGGAGAGGCTGCTATTGAT
CACGTGCCTTGAAACTGAAGCATGCGTGTAGACGGAGCTCAACCGAGATA
ATTCACAGTCGAGGTAACACTGAGCGTGTCAAAAGCGTTTCAGACGTTTC
GGGACAGCGGACGCTGCTTGCTGCACATGTGTTTTACCCAAGAGAAAAAC
GTATGTTGTTCCTAGTGTTTCATCTTCAATTTTTCATTGCCTCGTAAGAA
ACGTCTTTCCAGCGC
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig101:267215..269379+

>mRNA_Ecto-sp6_S_contig101.795.1 ID=mRNA_Ecto-sp6_S_contig101.795.1|Name=mRNA_Ecto-sp6_S_contig101.795.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=399bp|location=Sequence derived from alignment at Ecto-sp6_S_contig101:267215..269379+ (Ectocarpus species6 EcLAC_371)
ATGTCGTCGTACGAGTGGAAGAACATGAGCGCGCAGGCCCAGAAGGCCAA
CAAGGAATTCGGTGAGCTGTCCAGGGAGGAGATTCGCAAGGCCGGAGAGG
AAGAAGTCGACAAGGTCGAGAAGGCCCTCAAGGCCATGGAGCCTTTCAAC
GATGTCTTCGAGGTGCGACGGGAGGGGCTGGAAGTTTTTGCGGAGCTTGG
GCCAGAGGTCGGCACGTACTGGATCAAGTTCGACCTCAGCATTTATCAGA
TTTGCCTCATGTCACCGAGGTCGGGGCCGCACCGGTACATCTTCGACAAG
GGGTCAGGACGGTGGATCGGGGAAGCAGACAAACATGACTTTCAGGGGAT
GCTCACTGGAGACATAATTCAGTCCGCTTGTGGCATCCCCGACTTCTGA
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