mRNA_Ecto-sp6_S_contig101.795.1 (mRNA) Ectocarpus species6 EcLAC_371
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig101.795.1 vs. uniprot
Match: D7FPM8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPM8_ECTSI) HSP 1 Score: 404 bits (1037), Expect = 1.040e-136 Identity = 219/229 (95.63%), Postives = 220/229 (96.07%), Query Frame = 1 Query: 1 AAAAAAPPRRLSRASPHVWQRGFASRSLPSLLAPSNDGRLLGPGGRRRPPPICRTPRAPDRPWPEVRRSVSSASPPLXXXXXXXXXXXXXTAAVARAMSSYEWKNMSAQAQKANKEFGELSREEIRKAGEEEVDKVEKALKAMEPFNDVFEVRREGLEVFAELGPEVGTYWIKFDLSIYQICLMSPRSGPHRYIFDKGSGRWIGEADKHDFQGMLTGDIIQSACGIPDF 687
AAAAAAPPRRLSRASPH WQRGFASRSLPSLLAPS+DG LLGPGGRRRPPP CRTPRAPDRPWPEVRRSVSSAS XXXXXXXXXXXXX AVARAMSSYEWKNMSAQAQKANKEFGELSREEIRKAGEEEVDKVEKALKAMEPFNDVFEVRREGLEVFAELGPEVGTYWIKFDLSIYQICLMSPRSGPHRYIFDKGSGRWIGEADKHDFQGMLT DIIQSACGIPDF
Sbjct: 7 AAAAAAPPRRLSRASPHAWQRGFASRSLPSLLAPSDDGPLLGPGGRRRPPPFCRTPRAPDRPWPEVRRSVSSASXXXXXXXXXXXXXXXXXXAVARAMSSYEWKNMSAQAQKANKEFGELSREEIRKAGEEEVDKVEKALKAMEPFNDVFEVRREGLEVFAELGPEVGTYWIKFDLSIYQICLMSPRSGPHRYIFDKGSGRWIGEADKHDFQGMLTRDIIQSACGIPDF 235
BLAST of mRNA_Ecto-sp6_S_contig101.795.1 vs. uniprot
Match: A0A835Z714_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z714_9STRA) HSP 1 Score: 90.9 bits (224), Expect = 2.150e-18 Identity = 43/98 (43.88%), Postives = 64/98 (65.31%), Query Frame = 1 Query: 394 EVDKVEKALKAMEPFNDVFEVRREGLEVFAELGPEVGTYWIKFDLSIYQICLMSPRSGPHRYIFDKGSGRWIGEADKHDFQGMLTGDIIQSACGIPDF 687
E+++V A+ M+ N +FEV +V +LGP++GTY I+F + + L SPRSG Y++D+ + +W+G D HDF+GMLT D+IQ A G PDF
Sbjct: 13 EMERVVAAVDRMKEDNAIFEVIHADGKVSIDLGPKIGTYQIRFVHDLRVLQLSSPRSGGFMYVYDEKTRKWLGREDAHDFEGMLTRDLIQQANGYPDF 110 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig101.795.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig101.795.1 >prot_Ecto-sp6_S_contig101.795.1 ID=prot_Ecto-sp6_S_contig101.795.1|Name=mRNA_Ecto-sp6_S_contig101.795.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=133bp MSSYEWKNMSAQAQKANKEFGELSREEIRKAGEEEVDKVEKALKAMEPFNback to top mRNA from alignment at Ecto-sp6_S_contig101:267215..269379+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig101.795.1 ID=mRNA_Ecto-sp6_S_contig101.795.1|Name=mRNA_Ecto-sp6_S_contig101.795.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=2165bp|location=Sequence derived from alignment at Ecto-sp6_S_contig101:267215..269379+ (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig101:267215..269379+ >mRNA_Ecto-sp6_S_contig101.795.1 ID=mRNA_Ecto-sp6_S_contig101.795.1|Name=mRNA_Ecto-sp6_S_contig101.795.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=399bp|location=Sequence derived from alignment at Ecto-sp6_S_contig101:267215..269379+ (Ectocarpus species6 EcLAC_371)back to top |