Homology
BLAST of mRNA_Ecto-sp6_S_contig101.773.1 vs. uniprot
Match: A0A6H5L8R1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8R1_9PHAE) HSP 1 Score: 64.3 bits (155), Expect = 4.620e-10 Identity = 37/42 (88.10%), Postives = 37/42 (88.10%), Query Frame = 1 Query: 124 AGSPNTPSDGVVGAPGGGGDTGGDAGAARDNVAAMVESAMES 249
AGS NTPSDG VG GGGGD GGDAGAARDNVAAMVESAMES
Sbjct: 183 AGSANTPSDGAVGTRGGGGDIGGDAGAARDNVAAMVESAMES 224
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 0 |
| Start | 0 |
| Model size | 266 |
| Hectar predicted targeting category | other localisation |
| Exons | 2 |
| Cds size | 264 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1682348728.2439578-CDS-Ecto-sp6_S_contig101:12136..12361 | 1682348728.2439578-CDS-Ecto-sp6_S_contig101:12136..12361 | Ectocarpus species6 EcLAC_371 | CDS | Ecto-sp6_S_contig101 12137..12361 - |
| 1682348728.253606-CDS-Ecto-sp6_S_contig101:13323..13362 | 1682348728.253606-CDS-Ecto-sp6_S_contig101:13323..13362 | Ectocarpus species6 EcLAC_371 | CDS | Ecto-sp6_S_contig101 13324..13362 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig101.773.1 >prot_Ecto-sp6_S_contig101.773.1 ID=prot_Ecto-sp6_S_contig101.773.1|Name=mRNA_Ecto-sp6_S_contig101.773.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=88bp
RPGAGAGAGGPREEEKQSAEGQAVASASETSTDSGGGATAAAGSPNTPSD
GVVGAPGGGGDTGGDAGAARDNVAAMVESAMESVAAAE back to topmRNA from alignment at Ecto-sp6_S_contig101:12137..13362- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp6_S_contig101.773.1 ID=mRNA_Ecto-sp6_S_contig101.773.1|Name=mRNA_Ecto-sp6_S_contig101.773.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=1226bp|location=Sequence derived from alignment at Ecto-sp6_S_contig101:12137..13362- (Ectocarpus species6 EcLAC_371)
CGGCCGGGGGCGGGAGCGGGAGCTGGTGGGCCTAGAGAGGTAAAATTGGG
GGGGTCTCAGTGTAGTTGGCGTTGGTTTGTGTCGTCGTTTTGTTCATGTG
TACAATGGTTCATGCTTGTACTTGGAAGTATTGTATATACGTGTTGCATG
GGTGAGAGTGTCGGTCGTTTTTGTGACGACTGCTGCTGTTGTTGGTTTGT
TTTGCTGTTTTGGTTTTGAGATCGTGTGTACGGGTGTCCTTTGCTCGTGG
TGCTTGTGGTACGCACACGCAGCACAGCACAGCACTCGGTCGGTCGGACC
GGACCGGACCGCTTCTTCCCAGGCGTGCGCTGGCGGTGGACATTCTTGTC
TGTATGTGTGTCGATAGTGTTTGGTAAGGGGCAAGAAATCCCCCACGTCC
TCCCCCGAGAGATGCCACGTGTGTGATTGTTCTCACTGTCTGCGGACACC
GGTAAAACCATTCATTCCCCGCGCGGTTTACATGGGTTGTGATGCATCGG
TTTGAGACTCCCCCCATGTTCCGTGCCTCCAGTAAACTATTGAGTTCCCC
GCGCCCTTTGCCGAGGTCGCCGTGCATCGGTTGAGACGTTGTTGAGACTC
ACTCCCCCCGCCCGTTCCCGCGGAGCACTAGTCTACCGCAGTTGATGAAA
GATTCCACACACCCTGGACCTTTTTTTCAAAGCTCGACTACTCCATGATG
AACATGATGCATGGATCAACGACAAGTTTTCGGAATACTCTCGACGAGAC
GGCTTCAACGCCGCCATTTTCGTCGCCGCCACTCCTTGTGCTGTTGAGAA
ATCGAGCTTTGAAACTCGGTCCAGGGTGTGTGATATCTTATGTCACGTAC
GGTATCAGCTTCCGAGTTGACCGAAAAGACCCTTCGCGCCCCTTCTGGGC
TGTGCGTCCCCGTCCCCTCCCAACACCTTGCCGGCACGAATCCAACCAAG
CCAACCCTACGGCACAACCCCCCTCCCGGGCGCTGCTTCTTCGCGAGCCA
GGAGGAAAAGCAAAGCGCGGAAGGTCAGGCGGTGGCTTCGGCCTCGGAGA
CCAGCACCGACTCCGGCGGCGGCGCAACGGCGGCGGCGGGCAGCCCAAAC
ACGCCTTCCGATGGCGTAGTCGGTGCTCCCGGCGGGGGCGGTGACACGGG
AGGAGACGCGGGGGCCGCTCGTGACAACGTGGCGGCGATGGTGGAGAGCG
CGATGGAGTCGGTGGCGGCGGCGGAG back to topCoding sequence (CDS) from alignment at Ecto-sp6_S_contig101:12137..13362- >mRNA_Ecto-sp6_S_contig101.773.1 ID=mRNA_Ecto-sp6_S_contig101.773.1|Name=mRNA_Ecto-sp6_S_contig101.773.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=264bp|location=Sequence derived from alignment at Ecto-sp6_S_contig101:12137..13362- (Ectocarpus species6 EcLAC_371)
CGGCCGGGGGCGGGAGCGGGAGCTGGTGGGCCTAGAGAGGAGGAAAAGCA
AAGCGCGGAAGGTCAGGCGGTGGCTTCGGCCTCGGAGACCAGCACCGACT
CCGGCGGCGGCGCAACGGCGGCGGCGGGCAGCCCAAACACGCCTTCCGAT
GGCGTAGTCGGTGCTCCCGGCGGGGGCGGTGACACGGGAGGAGACGCGGG
GGCCGCTCGTGACAACGTGGCGGCGATGGTGGAGAGCGCGATGGAGTCGG
TGGCGGCGGCGGAG back to top
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