mRNA_Ecto-sp6_S_contig101.773.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp6_S_contig101.773.1
Unique Name	mRNA_Ecto-sp6_S_contig101.773.1
Type	mRNA
Organism	Ectocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)

Homology

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BLAST of mRNA_Ecto-sp6_S_contig101.773.1 vs. uniprot
Match: A0A6H5L8R1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8R1_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 4.620e-10
Identity = 37/42 (88.10%), Postives = 37/42 (88.10%), Query Frame = 1

Query:  124 AGSPNTPSDGVVGAPGGGGDTGGDAGAARDNVAAMVESAMES 249
            AGS NTPSDG VG  GGGGD GGDAGAARDNVAAMVESAMES
Sbjct:  183 AGSANTPSDGAVGTRGGGGDIGGDAGAARDNVAAMVESAMES 224

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp6_S_contig101.773.1 vs. uniprot

BLAST of mRNA_Ecto-sp6_S_contig101.773.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1

ZOOM

x 1

POSITION

0


Match Name	E-value	Identity	Description
A0A6H5L8R1_9PHAE	4.620e-10	88.10	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp6_S_contig101	contig	Ecto-sp6_S_contig101:12137..13362 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species6 EcLAC_371 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	0
Start	0
Model size	266
Hectar predicted targeting category	other localisation
Exons	2
Cds size	264

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1682348728.2439578-CDS-Ecto-sp6_S_contig101:12136..12361	1682348728.2439578-CDS-Ecto-sp6_S_contig101:12136..12361	Ectocarpus species6 EcLAC_371	CDS	Ecto-sp6_S_contig101 12137..12361 -
1682348728.253606-CDS-Ecto-sp6_S_contig101:13323..13362	1682348728.253606-CDS-Ecto-sp6_S_contig101:13323..13362	Ectocarpus species6 EcLAC_371	CDS	Ecto-sp6_S_contig101 13324..13362 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp6_S_contig101.773.1	prot_Ecto-sp6_S_contig101.773.1	Ectocarpus species6 EcLAC_371	polypeptide	Ecto-sp6_S_contig101 12137..13362 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp6_S_contig101:12137..13362-
coding sequence from alignment at Ecto-sp6_S_contig101:12137..13362-

protein sequence of mRNA_Ecto-sp6_S_contig101.773.1

>prot_Ecto-sp6_S_contig101.773.1 ID=prot_Ecto-sp6_S_contig101.773.1|Name=mRNA_Ecto-sp6_S_contig101.773.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=88bp
RPGAGAGAGGPREEEKQSAEGQAVASASETSTDSGGGATAAAGSPNTPSD
GVVGAPGGGGDTGGDAGAARDNVAAMVESAMESVAAAE

mRNA from alignment at Ecto-sp6_S_contig101:12137..13362-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp6_S_contig101.773.1 ID=mRNA_Ecto-sp6_S_contig101.773.1|Name=mRNA_Ecto-sp6_S_contig101.773.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=1226bp|location=Sequence derived from alignment at Ecto-sp6_S_contig101:12137..13362- (Ectocarpus species6 EcLAC_371)
CGGCCGGGGGCGGGAGCGGGAGCTGGTGGGCCTAGAGAGGTAAAATTGGG
GGGGTCTCAGTGTAGTTGGCGTTGGTTTGTGTCGTCGTTTTGTTCATGTG
TACAATGGTTCATGCTTGTACTTGGAAGTATTGTATATACGTGTTGCATG
GGTGAGAGTGTCGGTCGTTTTTGTGACGACTGCTGCTGTTGTTGGTTTGT
TTTGCTGTTTTGGTTTTGAGATCGTGTGTACGGGTGTCCTTTGCTCGTGG
TGCTTGTGGTACGCACACGCAGCACAGCACAGCACTCGGTCGGTCGGACC
GGACCGGACCGCTTCTTCCCAGGCGTGCGCTGGCGGTGGACATTCTTGTC
TGTATGTGTGTCGATAGTGTTTGGTAAGGGGCAAGAAATCCCCCACGTCC
TCCCCCGAGAGATGCCACGTGTGTGATTGTTCTCACTGTCTGCGGACACC
GGTAAAACCATTCATTCCCCGCGCGGTTTACATGGGTTGTGATGCATCGG
TTTGAGACTCCCCCCATGTTCCGTGCCTCCAGTAAACTATTGAGTTCCCC
GCGCCCTTTGCCGAGGTCGCCGTGCATCGGTTGAGACGTTGTTGAGACTC
ACTCCCCCCGCCCGTTCCCGCGGAGCACTAGTCTACCGCAGTTGATGAAA
GATTCCACACACCCTGGACCTTTTTTTCAAAGCTCGACTACTCCATGATG
AACATGATGCATGGATCAACGACAAGTTTTCGGAATACTCTCGACGAGAC
GGCTTCAACGCCGCCATTTTCGTCGCCGCCACTCCTTGTGCTGTTGAGAA
ATCGAGCTTTGAAACTCGGTCCAGGGTGTGTGATATCTTATGTCACGTAC
GGTATCAGCTTCCGAGTTGACCGAAAAGACCCTTCGCGCCCCTTCTGGGC
TGTGCGTCCCCGTCCCCTCCCAACACCTTGCCGGCACGAATCCAACCAAG
CCAACCCTACGGCACAACCCCCCTCCCGGGCGCTGCTTCTTCGCGAGCCA
GGAGGAAAAGCAAAGCGCGGAAGGTCAGGCGGTGGCTTCGGCCTCGGAGA
CCAGCACCGACTCCGGCGGCGGCGCAACGGCGGCGGCGGGCAGCCCAAAC
ACGCCTTCCGATGGCGTAGTCGGTGCTCCCGGCGGGGGCGGTGACACGGG
AGGAGACGCGGGGGCCGCTCGTGACAACGTGGCGGCGATGGTGGAGAGCG
CGATGGAGTCGGTGGCGGCGGCGGAG

Coding sequence (CDS) from alignment at Ecto-sp6_S_contig101:12137..13362-

>mRNA_Ecto-sp6_S_contig101.773.1 ID=mRNA_Ecto-sp6_S_contig101.773.1|Name=mRNA_Ecto-sp6_S_contig101.773.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=264bp|location=Sequence derived from alignment at Ecto-sp6_S_contig101:12137..13362- (Ectocarpus species6 EcLAC_371)
CGGCCGGGGGCGGGAGCGGGAGCTGGTGGGCCTAGAGAGGAGGAAAAGCA
AAGCGCGGAAGGTCAGGCGGTGGCTTCGGCCTCGGAGACCAGCACCGACT
CCGGCGGCGGCGCAACGGCGGCGGCGGGCAGCCCAAACACGCCTTCCGAT
GGCGTAGTCGGTGCTCCCGGCGGGGGCGGTGACACGGGAGGAGACGCGGG
GGCCGCTCGTGACAACGTGGCGGCGATGGTGGAGAGCGCGATGGAGTCGG
TGGCGGCGGCGGAG