Homology
BLAST of mRNA_Ecto-sp6_S_contig100.755.1 vs. uniprot
Match:
D7FRL7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRL7_ECTSI)
HSP 1 Score: 89.7 bits (221), Expect = 2.270e-21
Identity = 40/43 (93.02%), Postives = 41/43 (95.35%), Query Frame = 2
Query: 275 MATWYTIFFAFKACGMRRVTRP*TPGGGREHHASHRRLRFVKP 403
MATW TIFFAFKACGMRRVTRP TPGGGREHHASHRRLRF+KP
Sbjct: 1 MATWCTIFFAFKACGMRRVTRPWTPGGGREHHASHRRLRFLKP 43
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig100.755.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 1
0 1 Expect = 2.27e-21 / Id = 93.02 Sequence D7FRL7_ECTSI
Match Name E-value Identity Description
D7FRL7_ECTSI 2.270e-21 93.02 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Stop 1 Start 1 Model size 403 Hectar predicted targeting category no signal peptide or anchor Exons 2 Ec32 ortholog description expressed unknown protein Ec32 ortholog Ec-12_002570.1 Cds size 180
Relationships
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1682348726.681316-UTR-Ecto-sp6_S_contig100:522354..522560 1682348726.681316-UTR-Ecto-sp6_S_contig100:522354..522560 Ectocarpus species6 EcLAC_371 UTR Ecto-sp6_S_contig100 522355..522560 - 1682348726.6903176-UTR-Ecto-sp6_S_contig100:522592..522609 1682348726.6903176-UTR-Ecto-sp6_S_contig100:522592..522609 Ectocarpus species6 EcLAC_371 UTR Ecto-sp6_S_contig100 522593..522609 -
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1682348726.7006533-CDS-Ecto-sp6_S_contig100:522609..522789 1682348726.7006533-CDS-Ecto-sp6_S_contig100:522609..522789 Ectocarpus species6 EcLAC_371 CDS Ecto-sp6_S_contig100 522610..522789 -
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig100.755.1
>prot_Ecto-sp6_S_contig100.755.1 ID=prot_Ecto-sp6_S_contig100.755.1|Name=mRNA_Ecto-sp6_S_contig100.755.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=60bp
MTINRKEKTKRTRTAGDDIAEIPPYAVTCALGERGVRVGGGSGQCRLALP back to top mRNA from alignment at Ecto-sp6_S_contig100:522355..522789-
Legend: polypeptide CDS UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig100.755.1 ID=mRNA_Ecto-sp6_S_contig100.755.1|Name=mRNA_Ecto-sp6_S_contig100.755.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=435bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:522355..522789- (Ectocarpus species6 EcLAC_371)ATGACGATTAATAGAAAAGAGAAAACCAAGAGAACACGTACAGCGGGGGA
TGATATCGCTGAAATCCCGCCTTATGCCGTAACATGTGCTTTGGGGGAGC
GGGGGGTGCGTGTGGGAGGGGGATCGGGTCAGTGCAGATTAGCGCTGCCT
GCATATATCATATGTCGTTTGGGACCGTAA AACAGGCCAGGTGTTGG GTG
CTGCAGGGAGGGGGGAGGGGCGCGCGAAGATGTTTCATTGATGGGGTCTG
ATCAGGCGGGCGCTCGCCTTGAGCATGACGTAGAGAACAAGGTTCGCGAG
GCTGACATGGCGACATGGTATACAATCTTTTTCGCTTTCAAGGCTTGTGG
AATGCGAAGGGTGACGAGGCCGTAGACTCCCGGGGGTGGGCGCGAGCACC
ACGCCAGTCACCGCCGCCTTCGCTTCGTCAAGCCT back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig100:522355..522789-
>mRNA_Ecto-sp6_S_contig100.755.1 ID=mRNA_Ecto-sp6_S_contig100.755.1|Name=mRNA_Ecto-sp6_S_contig100.755.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=180bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:522355..522789- (Ectocarpus species6 EcLAC_371) back to top