Homology
BLAST of mRNA_Ecto-sp6_S_contig100.754.1 vs. uniprot
Match:
D7FRL8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRL8_ECTSI)
HSP 1 Score: 1126 bits (2912), Expect = 0.000e+0
Identity = 632/685 (92.26%), Postives = 637/685 (92.99%), Query Frame = 1
Query: 1 MEGDQDDEPYPQAVVLSQTCWEYKTLLDQESAPQQRRQPQHGKRNEARTSIALGTTPGERRWAKKAKTSASSGVREPRCAGTAPLATLRRTGKGESSKDVGSWDIFVLVLQASGVQQITSKRGSEVDFGTLLVADQSLSFFRLTLWGRTARAGGRLVRAGDLVFINEVGVSSFRGTVQACSTRSTSFRVVWRGDAFTTPQEAPSTTMLPQGRPPPASERSALSQGGDLSVSREAACALAAWAKTEFPSVTSPEPLRGGGGSGEGG---QDLWNRHATAAGVLPSVEEAGGAGXXXXXXXXXXDAAFRPGSLGAVRNGVEATVRACVVEVSEVERLWIWESAGGKRRKDLVSRATALLTDGRHEMTLQLWGDMASDETIDSLRGRAIAAGKNGVSARDGAMERPAVFEFTRLQPSFSFSCEALVLNGKSGTATHMDRGSAEAVSVXXXXXXXXXXXXXXXXXXXXVEGDERAPVSLAKAKSSCAGAPSFLAQGAGAPASARRFESVAALMSVDGFSGAGYLANVVIRKVCAPWLSAAGPPGEHGRAASLPSLGGVAPPVVIYFGDPDEPVPAAAAGDARSAGVEAVLGVTADGGALHELLAGVPLDLLAVGSGSSSRGGMAGDVGRRVVRCLLDGLEVGGRRGERVDVALACSASADENGRLIPGGSSYRLISLLPRYESVPGPDS 2046
MEGDQDDEPYPQAVVLSQTCWEYKTLLDQESAPQQRRQPQHGKR EAR SI LGT P ERRWAKKAKTSASSGVREPRCAGTAPLATLRR GKGESSKDVGSWD+FVLVLQASG+QQ+TSKRGSEVDFGTLLVADQSLSFFRLTLWGRTARAGGRLVRAGDLV N VGVSSFRGTVQACSTRSTSFRVVWRGDAFTTPQEAPSTTMLPQGRPPPASERSALSQGGDLSVSREAACALAAWAKTEFPSVTSPEP RG QDLWNRHATAAGVLPSVEEA GA XXXXXXXXXXDAAFRPGSLGAVRNGVE TVRACVVEVSEVERLWIW+ AGGKRRKDLVSRATALLTDGRHEMTLQLWGDMASDETIDSLRGR I AGKNGVSARDGAMERPAVFEFTRLQPSFSFSCEALVLNGKSGTATHMDRGSAEAV XXXXXXXXXXXXXXXXXXXX S SCAGAPSFLAQGAGAPASARRFESVAALMS DGFSGAGYLANVVIRKVCAPWLSAAGPPGEHGR ASLPSLG VAPPVVIYFGDPDEPVPAAAAGDARSAGVEAVLGVTADGGALHELL GVPLDLLAVGSGSSSRGGMAGDVGRRVV+CLLDGLEVGGRRGERVDVALACSASADENGRLIPGGSSYRLISLLPRYESVPGPDS
Sbjct: 1 MEGDQDDEPYPQAVVLSQTCWEYKTLLDQESAPQQRRQPQHGKRKEARKSIELGT-PAERRWAKKAKTSASSGVREPRCAGTAPLATLRRAGKGESSKDVGSWDVFVLVLQASGLQQVTSKRGSEVDFGTLLVADQSLSFFRLTLWGRTARAGGRLVRAGDLVRFNGVGVSSFRGTVQACSTRSTSFRVVWRGDAFTTPQEAPSTTMLPQGRPPPASERSALSQGGDLSVSREAACALAAWAKTEFPSVTSPEPPRGXXXXXXXXXXXQDLWNRHATAAGVLPSVEEAEGAXXXXXXXXXXXDAAFRPGSLGAVRNGVETTVRACVVEVSEVERLWIWKYAGGKRRKDLVSRATALLTDGRHEMTLQLWGDMASDETIDSLRGRVITAGKNGVSARDGAMERPAVFEFTRLQPSFSFSCEALVLNGKSGTATHMDRGSAEAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXS------SCAGAPSFLAQGAGAPASARRFESVAALMSADGFSGAGYLANVVIRKVCAPWLSAAGPPGEHGRTASLPSLGSVAPPVVIYFGDPDEPVPAAAAGDARSAGVEAVLGVTADGGALHELLGGVPLDLLAVGSGSSSRGGMAGDVGRRVVQCLLDGLEVGGRRGERVDVALACSASADENGRLIPGGSSYRLISLLPRYESVPGPDS 678
BLAST of mRNA_Ecto-sp6_S_contig100.754.1 vs. uniprot
Match:
A0A6H5KGT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGT9_9PHAE)
HSP 1 Score: 1052 bits (2720), Expect = 0.000e+0
Identity = 582/686 (84.84%), Postives = 602/686 (87.76%), Query Frame = 1
Query: 1 MEGDQDDEPYPQAVVLSQTCWEYKTLLDQESAPQQRRQPQHGKRNEARTSIALGTTPGERRWAKKAKTSASSGVREPRCAGTAPLATLRRTGKGESSKDVGSWDIFVLVLQASGVQQITSKRGSEVDFGTLLVADQSLSFFRLTLWGRTARAGGRLVRAGDLVFINEVGVSSFRGTVQACSTRSTSFRVVWRGDAFTTPQEAPSTTMLPQGRPPPASERSALSQGGDLSVSREAACALAAWAKTEFPSVTSPEPLRGGGGSGEGGQDLWNRHATAAGVLPSVEEAGGAGXXXXXXXXXXDAAFRPGSLGAVRNGVEATVRACVVEVSEVERLWIWESAGGKRRKDLVSRATALLTDGRHEMTLQLWGDMASDETIDSLRGRAIAAGKNGVSARDGAMERPAVFEFTRLQPSFSFSCEALVLNGKSGTATHMDRGSAEAVSVXXXXXXXXXXXXXXXXXXXXVEGDERAPVSLAKAKSSCAGAPSFLAQGAGAPASARRFESVAALMSVDGFSGAGYLANVVIRKVCAPWLSAAGPPGEHGRAASLPSLGGVAPPVVIYFGDPDEPVPAAAAG-----DARSAGVEAVLGVTADGGALHELLAGVPLDLLAVGSGSSSRGGMAGDVGRRVVRCLLDGLEVGGRRGERVDVALACSASADENGRLIPGGSSYRLISLLPRYESVPGPD 2043
ME DQ D+PYPQAVVLSQTCWEYKTLLDQESAP QRRQP+HGKR+E+R SIALGT P E RWAKKAKTSASS VREP CAG APLATLR+ GKGE+SK VGSWDIFVLVLQASG++Q+TSKRGSEVDFGTLLVADQSLSFFRLTLWGRTARAGGRLVRAGDLV N +GVSSF+GTVQACSTR TSFRVVWRGDAFTTPQEAPSTTMLP GRPPPASERS LSQGGDL+VSREAACALAAWAKTEFPS+TSPEP RG Q L NRHA A GV P +EE GG G DAAFRPGSLGA RNGV TVRACVVEVSEVERLW+WESAGGKRRKDLVSRATALLTDGRHEMTLQLWGDMASDETIDSLRGRAIAAGKN VSA D MERPAVFEFTRLQPSFSFSCE LVLNGKSGT T MDRGSAEAVS XXXXXXXXXXXXXXXX DERAPVSLA AKSSCAG+PSFLAQGAGAPASARRFESVAALMS DGFSGAGYL NVV+RKVCAPWLSAAG P EHGRAASLPSLGGVAPPVVIY GD DEPVPAAAA DA SAGVEAV+GVTADGGALHELL GVPLDLLAVGSG SR GMAGDVGR VV+CLLDGLEVGGRRGERVDVALACSASADENGR IPGGSSYRLISLLP+YE VPGPD
Sbjct: 1 MEVDQHDDPYPQAVVLSQTCWEYKTLLDQESAPPQRRQPEHGKRDESRKSIALGTPPSEPRWAKKAKTSASSSVREPWCAGMAPLATLRQAGKGETSKGVGSWDIFVLVLQASGLEQVTSKRGSEVDFGTLLVADQSLSFFRLTLWGRTARAGGRLVRAGDLVRFNGIGVSSFQGTVQACSTRKTSFRVVWRGDAFTTPQEAPSTTMLPLGRPPPASERSPLSQGGDLAVSREAACALAAWAKTEFPSITSPEPPRGXXXXXXX-QHLCNRHAAAPGVSPLMEEEGGVGADSGDAAAAGDAAFRPGSLGAARNGVGTTVRACVVEVSEVERLWMWESAGGKRRKDLVSRATALLTDGRHEMTLQLWGDMASDETIDSLRGRAIAAGKNDVSAHDRTMERPAVFEFTRLQPSFSFSCETLVLNGKSGTVTQMDRGSAEAVSXXXXXXXXXXXXXXXXX-------DERAPVSLATAKSSCAGSPSFLAQGAGAPASARRFESVAALMSADGFSGAGYLDNVVVRKVCAPWLSAAGSPDEHGRAASLPSLGGVAPPVVIYLGDLDEPVPAAAAAAAGTCDAWSAGVEAVVGVTADGGALHELLGGVPLDLLAVGSGRGSRRGMAGDVGRGVVQCLLDGLEVGGRRGERVDVALACSASADENGRFIPGGSSYRLISLLPKYEWVPGPD 678
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig100.754.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 0.00e+0 / Id = 92.26 Expect = 0.00e+0 / Id = 84.84 Sequence D7FRL8_ECTSI A0A6H5KGT9_9PHAE
Match Name E-value Identity Description
D7FRL8_ECTSI 0.000e+0 92.26 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more] A0A6H5KGT9_9PHAE 0.000e+0 84.84 Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Stop 1 Start 1 Model size 2049 Hectar predicted targeting category other localisation Exons 4 Ec32 ortholog description Nucleic acid-binding, OB-fold Ec32 ortholog Ec-12_002560.1 Cds size 2049
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1682348726.6114762-CDS-Ecto-sp6_S_contig100:517607..518093 1682348726.6114762-CDS-Ecto-sp6_S_contig100:517607..518093 Ectocarpus species6 EcLAC_371 CDS Ecto-sp6_S_contig100 517608..518093 + 1682348726.6272655-CDS-Ecto-sp6_S_contig100:518613..518627 1682348726.6272655-CDS-Ecto-sp6_S_contig100:518613..518627 Ectocarpus species6 EcLAC_371 CDS Ecto-sp6_S_contig100 518614..518627 + 1682348726.6394174-CDS-Ecto-sp6_S_contig100:518895..519413 1682348726.6394174-CDS-Ecto-sp6_S_contig100:518895..519413 Ectocarpus species6 EcLAC_371 CDS Ecto-sp6_S_contig100 518896..519413 + 1682348726.649276-CDS-Ecto-sp6_S_contig100:519940..520971 1682348726.649276-CDS-Ecto-sp6_S_contig100:519940..520971 Ectocarpus species6 EcLAC_371 CDS Ecto-sp6_S_contig100 519941..520971 +
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig100.754.1
>prot_Ecto-sp6_S_contig100.754.1 ID=prot_Ecto-sp6_S_contig100.754.1|Name=mRNA_Ecto-sp6_S_contig100.754.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=683bp
MEGDQDDEPYPQAVVLSQTCWEYKTLLDQESAPQQRRQPQHGKRNEARTS back to top mRNA from alignment at Ecto-sp6_S_contig100:517608..520971+
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig100.754.1 ID=mRNA_Ecto-sp6_S_contig100.754.1|Name=mRNA_Ecto-sp6_S_contig100.754.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=3364bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:517608..520971+ (Ectocarpus species6 EcLAC_371)ATGGAAGGGGATCAAGATGACGAGCCTTACCCGCAAGCAGTGGTGCTATC
ACAGACATGCTGGGAGTACAAAACACTCCTCGATCAAGAATCGGCACCGC
AGCAGAGGAGGCAGCCGCAACACGGCAAGAGGAACGAGGCCCGAACGTCG
ATAGCACTAGGAACAACACCCGGCGAACGACGATGGGCGAAGAAGGCCAA
GACAAGCGCGTCGTCTGGTGTGAGAGAGCCGCGGTGTGCTGGAACGGCAC
CCCTCGCGACCCTTCGTCGGACGGGCAAGGGCGAGAGCAGCAAGGACGTT
GGGTCCTGGGACATCTTCGTGCTTGTGCTGCAGGCTAGCGGCGTTCAGCA
GATCACTTCCAAGAGGGGTTCCGAGGTCGATTTCGGCACTCTGCTCGTCG
CAGACCAAAGCCTCTCTTTTTTCCGGTTGACGCTGTGGGGGAGAACGGCT
AGAGCAGGCGGGAGGCTGGTCCGGGCAGGAGATCTC GTCCGTCTCAACGG
GCGAGTGGGCACAGCGGGTGGAAGCTTAAAGCTTCGCTACACTCCGCACG
ATTATGTTTGTTGTTTCGGGTGTCGAGCGTTGCTTCTTGTGAACGTTTGC
TCTGGTAATGACCTAGATGAGCTGGCCTGCTGCCGTAGCATTAGAGAAAA
GAGAACCCACGGGCAGCGCCGCAATGGCTAGCGCAAGAGCGCACGGTGAG
TATTGCGGCCTAACACCCTATCGTACGTGTGGTGAGATTGTGCAGAGCGG
GACGCGTCCGACAACTGTTGTAGCAGATGTTGCACGTAGACATTTGCCTC
TTTTTTAACTAGCTCAAACTTGCGTTGATCAGAATTGCTCGCTTTGTGGC
CCCTGGAATGGGCGACAAGCTCTGACTGTGGTGCCGGTCCATGTTCATCG
TTTTTCTCATGCAACCGTCCAAGAACAGCTGGTTCTTCCGTGAAGACCCT
GAACTCGATTGTCAAGTCCTTGCATTTTGTCGGCGAAATGCCTCTTCAAC
GAACAGGTTTTCATAAATGA GTGCAAGGCGTCTTTTTTCCTCTCTGACAA
CCGTACAAGAGTGGTTCTTGTATTTGGCAGGAGGGGCAAGCGGAACCCTT
GCTGTAGTGGCCAGAGACACTTCGGGCAGGCCAGCCCTCAACATGGTCAA
CGTCGGCACTGGTGGTATGCACACGTTACAGCATTCACCTTTAAACGCTA
CACATCTCCTTGTTCTGCGCGTGCGTGGTCGAAAATCATAGTCCCCTCCC
CCCACCGTTTCCCCTTCCCCTCCTTGCGCATGTGGTAGGGTCGGCGTGAG
CTCGTTTCGAGGCACCGTCCAGGCGTGCTCCACCCGAAGCACCAGCTTCC
GAGTCGTTTGGCGAGGCGACGCCTTCACCACCCCGCAAGAAGCCCCGAGC
ACCACCATGCTGCCCCAGGGGCGGCCGCCCCCCGCCAGCGAGCGCTCCGC
GCTCTCACAAGGCGGCGACCTCTCCGTGTCGCGAGAAGCGGCCTGCGCCC
TGGCCGCCTGGGCGAAGACCGAGTTCCCTTCCGTCACGTCACCCGAGCCC
CTCCGTGGCGGCGGCGGCAGCGGCGAGGGCGGGCAAGACCTGTGGAACCG
ACACGCGACCGCCGCCGGGGTTCTGCCGTCGGTGGAGGAGGCGGGAGGTG
CAGGTGCCGATGCTGGTGCTGGTGCTGGTGCTGGCGATGCTGCTTTTCGG
CCCGGGTCGCTGGGCGCCGTGAGGAACGGGGTGGAGGCCACCGTACGAGC
TTGCGTGGTTGAGGTTTCCGAGGTGGAGCGGCTGTGGATATGGGAGTCCG
CGGGAG GTGAGACAGAGATACAGATAGGATGTTCGCAGCAGCGTGCTGCT
GCTGCTGCTGCTGCTGCTGCCGTGAGGGTTGGTATTGTATCAGAAGATGT
TTGGCGTTGTTGTGCTGCAGCTATAAAAGTGCCGAGTGCCAAGTGGGTCG
TCGTCCCCCCCTTTTGTGCTCCATTTGCTAGGAGAAGGGGGGGGGGGGGT
TGAAGCCGGGTATCTGTTGGAGGTCGTCAGCCGTTCCGTGCCATGACTTT
CGCGGTCGAGAGGAACGCCGTGTTGAGGACAACCAGCCGTAGTACCATGA
CTATTATGCGAATTTTTGGTGAAGTTATCGCAATATGTTGTTTCTCTCTG
TGCTGGCTCTATCTTCGATGCAATGCAAACTCAAAAAAACGACACCTATC
ATTCGTTTTTAGGGTTCGTTTTAAGGGTTTCAGTGTCCTCCCAAGGGTTT
CAGTGTCCTCCCAAGCTTGCCCTAATCGCCTCGATGAAAAAACACGAGCC
GAACCCATATGCTTTTTTTTACGTGACGGAAAGGAAAACGTAGGAAAGAC
CTCGTCTCGAGAGCTACCGCGCTGCTCACCGACGGCCGGCACGAGATGAC
GCTGCAGCTCTGGGGTGACATGGCCTCCGACGAAACCATCGACAGCTTGA
GGGGAAGAGCCATCGCCGCCGGCAAGAACGGCGTCTCGGCCCGAGACGGG
GCGATGGAACGACCCGCGGTTTTCGAGTTCACCCGCCTGCAGCCGTCGTT
CAGCTTCTCGTGCGAGGCTCTGGTCCTCAACGGTAAGAGCGGCACCGCGA
CACACATGGACCGCGGTTCGGCGGAAGCGGTTTCCGTGTCAACAGCAGTG
CTGGCCTCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCCGT
CGAGGGAGACGAGAGAGCTCCGGTGTCGCTTGCCAAGGCGAAGAGCTCGT
GCGCGGGAGCCCCGTCATTCCTCGCTCAAGGGGCCGGGGCACCGGCATCC
GCTCGGAGGTTCGAGTCCGTCGCCGCGCTAATGAGCGTCGACGGCTTTTC
CGGGGCAGGGTACCTCGCCAACGTCGTCATCCGGAAAGTTTGCGCCCCAT
GGCTGTCGGCTGCGGGGCCCCCCGGTGAGCACGGCCGAGCCGCGAGTCTA
CCGTCTCTCGGTGGTGTTGCCCCGCCTGTGGTTATTTACTTCGGCGACCC
TGATGAACCGGTCCCAGCGGCGGCGGCTGGCGATGCTAGATCGGCGGGAG
TTGAGGCCGTCCTGGGAGTGACGGCAGACGGCGGGGCTTTGCACGAGCTG
TTGGCCGGCGTTCCCCTCGACCTCCTCGCTGTCGGAAGCGGCAGCAGCAG
CCGTGGGGGGATGGCTGGCGACGTCGGTAGGAGGGTGGTGCGGTGTCTGC
TCGATGGGTTGGAGGTCGGGGGTCGCCGAGGGGAGCGTGTAGACGTAGCA
CTGGCTTGCTCGGCGTCTGCAGACGAAAACGGCAGGCTCATTCCCGGGGG
GAGCTCGTACCGCCTCATAAGCCTCCTCCCTAGATACGAGTCGGTCCCGG
GGCCTGATTCTTGA back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig100:517608..520971+
>mRNA_Ecto-sp6_S_contig100.754.1 ID=mRNA_Ecto-sp6_S_contig100.754.1|Name=mRNA_Ecto-sp6_S_contig100.754.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=2049bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:517608..520971+ (Ectocarpus species6 EcLAC_371) back to top