mRNA_Ecto-sp6_S_contig100.754.1 (mRNA) Ectocarpus species6 EcLAC_371
You are viewing an mRNA, more information available on the corresponding polypeptide page
|
Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig100.754.1 vs. uniprot
Match: D7FRL8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRL8_ECTSI) HSP 1 Score: 1126 bits (2912), Expect = 0.000e+0 Identity = 632/685 (92.26%), Postives = 637/685 (92.99%), Query Frame = 1 Query: 1 MEGDQDDEPYPQAVVLSQTCWEYKTLLDQESAPQQRRQPQHGKRNEARTSIALGTTPGERRWAKKAKTSASSGVREPRCAGTAPLATLRRTGKGESSKDVGSWDIFVLVLQASGVQQITSKRGSEVDFGTLLVADQSLSFFRLTLWGRTARAGGRLVRAGDLVFINEVGVSSFRGTVQACSTRSTSFRVVWRGDAFTTPQEAPSTTMLPQGRPPPASERSALSQGGDLSVSREAACALAAWAKTEFPSVTSPEPLRGGGGSGEGG---QDLWNRHATAAGVLPSVEEAGGAGXXXXXXXXXXDAAFRPGSLGAVRNGVEATVRACVVEVSEVERLWIWESAGGKRRKDLVSRATALLTDGRHEMTLQLWGDMASDETIDSLRGRAIAAGKNGVSARDGAMERPAVFEFTRLQPSFSFSCEALVLNGKSGTATHMDRGSAEAVSVXXXXXXXXXXXXXXXXXXXXVEGDERAPVSLAKAKSSCAGAPSFLAQGAGAPASARRFESVAALMSVDGFSGAGYLANVVIRKVCAPWLSAAGPPGEHGRAASLPSLGGVAPPVVIYFGDPDEPVPAAAAGDARSAGVEAVLGVTADGGALHELLAGVPLDLLAVGSGSSSRGGMAGDVGRRVVRCLLDGLEVGGRRGERVDVALACSASADENGRLIPGGSSYRLISLLPRYESVPGPDS 2046
MEGDQDDEPYPQAVVLSQTCWEYKTLLDQESAPQQRRQPQHGKR EAR SI LGT P ERRWAKKAKTSASSGVREPRCAGTAPLATLRR GKGESSKDVGSWD+FVLVLQASG+QQ+TSKRGSEVDFGTLLVADQSLSFFRLTLWGRTARAGGRLVRAGDLV N VGVSSFRGTVQACSTRSTSFRVVWRGDAFTTPQEAPSTTMLPQGRPPPASERSALSQGGDLSVSREAACALAAWAKTEFPSVTSPEP RG QDLWNRHATAAGVLPSVEEA GA XXXXXXXXXXDAAFRPGSLGAVRNGVE TVRACVVEVSEVERLWIW+ AGGKRRKDLVSRATALLTDGRHEMTLQLWGDMASDETIDSLRGR I AGKNGVSARDGAMERPAVFEFTRLQPSFSFSCEALVLNGKSGTATHMDRGSAEAV XXXXXXXXXXXXXXXXXXXX S SCAGAPSFLAQGAGAPASARRFESVAALMS DGFSGAGYLANVVIRKVCAPWLSAAGPPGEHGR ASLPSLG VAPPVVIYFGDPDEPVPAAAAGDARSAGVEAVLGVTADGGALHELL GVPLDLLAVGSGSSSRGGMAGDVGRRVV+CLLDGLEVGGRRGERVDVALACSASADENGRLIPGGSSYRLISLLPRYESVPGPDS
Sbjct: 1 MEGDQDDEPYPQAVVLSQTCWEYKTLLDQESAPQQRRQPQHGKRKEARKSIELGT-PAERRWAKKAKTSASSGVREPRCAGTAPLATLRRAGKGESSKDVGSWDVFVLVLQASGLQQVTSKRGSEVDFGTLLVADQSLSFFRLTLWGRTARAGGRLVRAGDLVRFNGVGVSSFRGTVQACSTRSTSFRVVWRGDAFTTPQEAPSTTMLPQGRPPPASERSALSQGGDLSVSREAACALAAWAKTEFPSVTSPEPPRGXXXXXXXXXXXQDLWNRHATAAGVLPSVEEAEGAXXXXXXXXXXXDAAFRPGSLGAVRNGVETTVRACVVEVSEVERLWIWKYAGGKRRKDLVSRATALLTDGRHEMTLQLWGDMASDETIDSLRGRVITAGKNGVSARDGAMERPAVFEFTRLQPSFSFSCEALVLNGKSGTATHMDRGSAEAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXS------SCAGAPSFLAQGAGAPASARRFESVAALMSADGFSGAGYLANVVIRKVCAPWLSAAGPPGEHGRTASLPSLGSVAPPVVIYFGDPDEPVPAAAAGDARSAGVEAVLGVTADGGALHELLGGVPLDLLAVGSGSSSRGGMAGDVGRRVVQCLLDGLEVGGRRGERVDVALACSASADENGRLIPGGSSYRLISLLPRYESVPGPDS 678
BLAST of mRNA_Ecto-sp6_S_contig100.754.1 vs. uniprot
Match: A0A6H5KGT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGT9_9PHAE) HSP 1 Score: 1052 bits (2720), Expect = 0.000e+0 Identity = 582/686 (84.84%), Postives = 602/686 (87.76%), Query Frame = 1 Query: 1 MEGDQDDEPYPQAVVLSQTCWEYKTLLDQESAPQQRRQPQHGKRNEARTSIALGTTPGERRWAKKAKTSASSGVREPRCAGTAPLATLRRTGKGESSKDVGSWDIFVLVLQASGVQQITSKRGSEVDFGTLLVADQSLSFFRLTLWGRTARAGGRLVRAGDLVFINEVGVSSFRGTVQACSTRSTSFRVVWRGDAFTTPQEAPSTTMLPQGRPPPASERSALSQGGDLSVSREAACALAAWAKTEFPSVTSPEPLRGGGGSGEGGQDLWNRHATAAGVLPSVEEAGGAGXXXXXXXXXXDAAFRPGSLGAVRNGVEATVRACVVEVSEVERLWIWESAGGKRRKDLVSRATALLTDGRHEMTLQLWGDMASDETIDSLRGRAIAAGKNGVSARDGAMERPAVFEFTRLQPSFSFSCEALVLNGKSGTATHMDRGSAEAVSVXXXXXXXXXXXXXXXXXXXXVEGDERAPVSLAKAKSSCAGAPSFLAQGAGAPASARRFESVAALMSVDGFSGAGYLANVVIRKVCAPWLSAAGPPGEHGRAASLPSLGGVAPPVVIYFGDPDEPVPAAAAG-----DARSAGVEAVLGVTADGGALHELLAGVPLDLLAVGSGSSSRGGMAGDVGRRVVRCLLDGLEVGGRRGERVDVALACSASADENGRLIPGGSSYRLISLLPRYESVPGPD 2043
ME DQ D+PYPQAVVLSQTCWEYKTLLDQESAP QRRQP+HGKR+E+R SIALGT P E RWAKKAKTSASS VREP CAG APLATLR+ GKGE+SK VGSWDIFVLVLQASG++Q+TSKRGSEVDFGTLLVADQSLSFFRLTLWGRTARAGGRLVRAGDLV N +GVSSF+GTVQACSTR TSFRVVWRGDAFTTPQEAPSTTMLP GRPPPASERS LSQGGDL+VSREAACALAAWAKTEFPS+TSPEP RG Q L NRHA A GV P +EE GG G DAAFRPGSLGA RNGV TVRACVVEVSEVERLW+WESAGGKRRKDLVSRATALLTDGRHEMTLQLWGDMASDETIDSLRGRAIAAGKN VSA D MERPAVFEFTRLQPSFSFSCE LVLNGKSGT T MDRGSAEAVS XXXXXXXXXXXXXXXX DERAPVSLA AKSSCAG+PSFLAQGAGAPASARRFESVAALMS DGFSGAGYL NVV+RKVCAPWLSAAG P EHGRAASLPSLGGVAPPVVIY GD DEPVPAAAA DA SAGVEAV+GVTADGGALHELL GVPLDLLAVGSG SR GMAGDVGR VV+CLLDGLEVGGRRGERVDVALACSASADENGR IPGGSSYRLISLLP+YE VPGPD
Sbjct: 1 MEVDQHDDPYPQAVVLSQTCWEYKTLLDQESAPPQRRQPEHGKRDESRKSIALGTPPSEPRWAKKAKTSASSSVREPWCAGMAPLATLRQAGKGETSKGVGSWDIFVLVLQASGLEQVTSKRGSEVDFGTLLVADQSLSFFRLTLWGRTARAGGRLVRAGDLVRFNGIGVSSFQGTVQACSTRKTSFRVVWRGDAFTTPQEAPSTTMLPLGRPPPASERSPLSQGGDLAVSREAACALAAWAKTEFPSITSPEPPRGXXXXXXX-QHLCNRHAAAPGVSPLMEEEGGVGADSGDAAAAGDAAFRPGSLGAARNGVGTTVRACVVEVSEVERLWMWESAGGKRRKDLVSRATALLTDGRHEMTLQLWGDMASDETIDSLRGRAIAAGKNDVSAHDRTMERPAVFEFTRLQPSFSFSCETLVLNGKSGTVTQMDRGSAEAVSXXXXXXXXXXXXXXXXX-------DERAPVSLATAKSSCAGSPSFLAQGAGAPASARRFESVAALMSADGFSGAGYLDNVVVRKVCAPWLSAAGSPDEHGRAASLPSLGGVAPPVVIYLGDLDEPVPAAAAAAAGTCDAWSAGVEAVVGVTADGGALHELLGGVPLDLLAVGSGRGSRRGMAGDVGRGVVQCLLDGLEVGGRRGERVDVALACSASADENGRFIPGGSSYRLISLLPKYEWVPGPD 678 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig100.754.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig100.754.1 >prot_Ecto-sp6_S_contig100.754.1 ID=prot_Ecto-sp6_S_contig100.754.1|Name=mRNA_Ecto-sp6_S_contig100.754.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=683bp MEGDQDDEPYPQAVVLSQTCWEYKTLLDQESAPQQRRQPQHGKRNEARTSback to top mRNA from alignment at Ecto-sp6_S_contig100:517608..520971+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig100.754.1 ID=mRNA_Ecto-sp6_S_contig100.754.1|Name=mRNA_Ecto-sp6_S_contig100.754.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=3364bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:517608..520971+ (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig100:517608..520971+ >mRNA_Ecto-sp6_S_contig100.754.1 ID=mRNA_Ecto-sp6_S_contig100.754.1|Name=mRNA_Ecto-sp6_S_contig100.754.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=2049bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:517608..520971+ (Ectocarpus species6 EcLAC_371)back to top |