Homology
BLAST of mRNA_Ecto-sp6_S_contig100.742.1 vs. uniprot
Match:
D7FRN0_ECTSI (UBC core domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRN0_ECTSI)
HSP 1 Score: 351 bits (900), Expect = 1.240e-116
Identity = 161/161 (100.00%), Postives = 161/161 (100.00%), Query Frame = 3
Query: 201 MSGIAAARLKQERKDWRRDPDRPFGWWTRLSANPDGSSSIMKWECGLPGPKNTNWEGGEYRIHMEFTEDYPSKPPKCKFVPPLFHPNVYPSGTICLSILNEGQGWRPSITIKQMLHGIFELLDNPNPDDPAQSEAYQLFVNNKAEYDRRVLIEAKKNPPAA 683
MSGIAAARLKQERKDWRRDPDRPFGWWTRLSANPDGSSSIMKWECGLPGPKNTNWEGGEYRIHMEFTEDYPSKPPKCKFVPPLFHPNVYPSGTICLSILNEGQGWRPSITIKQMLHGIFELLDNPNPDDPAQSEAYQLFVNNKAEYDRRVLIEAKKNPPAA
Sbjct: 1 MSGIAAARLKQERKDWRRDPDRPFGWWTRLSANPDGSSSIMKWECGLPGPKNTNWEGGEYRIHMEFTEDYPSKPPKCKFVPPLFHPNVYPSGTICLSILNEGQGWRPSITIKQMLHGIFELLDNPNPDDPAQSEAYQLFVNNKAEYDRRVLIEAKKNPPAA 161
BLAST of mRNA_Ecto-sp6_S_contig100.742.1 vs. uniprot
Match:
A0A7S3NHG5_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NHG5_9STRA)
HSP 1 Score: 242 bits (618), Expect = 2.540e-74
Identity = 108/159 (67.92%), Postives = 129/159 (81.13%), Query Frame = 3
Query: 201 MSGIAAARLKQERKDWRRDPDRPFGWWTRLSANPDGSSSIMKWECGLPGPKNTNWEGGEYRIHMEFTEDYPSKPPKCKFVPPLFHPNVYPSGTICLSILNEGQGWRPSITIKQMLHGIFELLDNPNPDDPAQSEAYQLFVNNKAEYDRRVLIEAKKNPP 677
MSGIA RL +ERK+WRRD PFG+W R + PDG++S+++W+CG+PG K T+WE G YR+ MEFTEDYPSKPPKCKF PPLFHPNVYPSGTICLSILNE Q WRP+ITIKQML GI +LLD PNP PAQ AY+LF+N+K Y +R+ EA+KNPP
Sbjct: 1 MSGIARGRLAEERKNWRRD--HPFGFWARPALKPDGTTSLLQWDCGIPGKKGTDWENGVYRVRMEFTEDYPSKPPKCKFTPPLFHPNVYPSGTICLSILNEDQDWRPAITIKQMLLGIQDLLDTPNPRSPAQDAAYKLFINDKNAYSQRIRQEARKNPP 157
BLAST of mRNA_Ecto-sp6_S_contig100.742.1 vs. uniprot
Match:
A0A835YNI1_9STRA (Ubiquitin conjugating enzyme n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNI1_9STRA)
HSP 1 Score: 241 bits (616), Expect = 5.210e-74
Identity = 108/157 (68.79%), Postives = 133/157 (84.71%), Query Frame = 3
Query: 207 GIAAARLKQERKDWRRDPDRPFGWWTRLSANPDGSSSIMKWECGLPGPKNTNWEGGEYRIHMEFTEDYPSKPPKCKFVPPLFHPNVYPSGTICLSILNEGQGWRPSITIKQMLHGIFELLDNPNPDDPAQSEAYQLFVNNKAEYDRRVLIEAKKNPP 677
GIA ARL +ERK WR+D P G++ R +NPD S ++MKW+CG+PG +++W GG Y++ MEFT++YPSKPPKCKFVPPLFHPNVYPSGT+CLSILNE GWRP+ITIKQML GI +LLDNPNP+ PAQSEAYQ+FVNN+AEY+RRV +EA+KN P
Sbjct: 4 GIARARLAEERKAWRKD--HPIGFYARPVSNPDNSMNLMKWDCGIPGVASSDWAGGVYKLSMEFTDEYPSKPPKCKFVPPLFHPNVYPSGTVCLSILNEDDGWRPAITIKQMLLGIQDLLDNPNPNSPAQSEAYQMFVNNRAEYNRRVRLEARKNIP 158
BLAST of mRNA_Ecto-sp6_S_contig100.742.1 vs. uniprot
Match:
A0A6U0IJL9_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A6U0IJL9_9STRA)
HSP 1 Score: 239 bits (610), Expect = 3.940e-73
Identity = 109/158 (68.99%), Postives = 132/158 (83.54%), Query Frame = 3
Query: 207 GIAAARLKQERKDWRRDPDRPFGWWTRLSANPDGSSSIMKWECGLPGPKNTNWEGGEYRIHMEFTEDYPSKPPKCKFVPPLFHPNVYPSGTICLSILNEGQGWRPSITIKQMLHGIFELLDNPNPDDPAQSEAYQLFVNNKAEYDRRVLIEAKKNPPA 680
GIA RL +ERK+WRRD PFG++ R + DGSS++MKW G+PG +NT+W GG Y++ +EF+E+YPSKPPKCKFVPPLFHPNVYPSGTICLSILNE +GWRP+ITIKQML GI +LLD+PNP+ PAQSEAYQLF+NNK EY RRV EA+KN P+
Sbjct: 4 GIARGRLAEERKNWRRD--HPFGFYARPESKGDGSSNLMKWATGIPGKENTDWSGGVYKVTLEFSEEYPSKPPKCKFVPPLFHPNVYPSGTICLSILNEEEGWRPAITIKQMLLGIQDLLDDPNPNSPAQSEAYQLFMNNKPEYKRRVKAEARKNAPS 159
BLAST of mRNA_Ecto-sp6_S_contig100.742.1 vs. uniprot
Match:
A0A448ZL65_9STRA (UBC core domain-containing protein n=2 Tax=Bacillariaceae TaxID=33852 RepID=A0A448ZL65_9STRA)
HSP 1 Score: 238 bits (607), Expect = 1.030e-72
Identity = 109/158 (68.99%), Postives = 131/158 (82.91%), Query Frame = 3
Query: 204 SGIAAARLKQERKDWRRDPDRPFGWWTRLSANPDGSSSIMKWECGLPGPKNTNWEGGEYRIHMEFTEDYPSKPPKCKFVPPLFHPNVYPSGTICLSILNEGQGWRPSITIKQMLHGIFELLDNPNPDDPAQSEAYQLFVNNKAEYDRRVLIEAKKNPP 677
SGIA RL +ERK WRRD PFG++ R ++ DGSS IMKWE G+PG + T+WE G +++ MEF+EDYPSKPPKCKFVPPLFHPNVYPSGTICLSILNE +GWRP+IT+KQ+L GI +LLD+PNP+ PAQSEAYQLF++NK EY RRV EA+KN P
Sbjct: 3 SGIARGRLVEERKAWRRD--HPFGFYARPTSKGDGSSDIMKWEAGIPGKEGTDWENGVFKVSMEFSEDYPSKPPKCKFVPPLFHPNVYPSGTICLSILNEEEGWRPAITLKQVLIGIQDLLDDPNPNSPAQSEAYQLFIHNKTEYKRRVQAEARKNTP 158
BLAST of mRNA_Ecto-sp6_S_contig100.742.1 vs. uniprot
Match:
D7G3Z7_ECTSI (UBC core domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3Z7_ECTSI)
HSP 1 Score: 238 bits (606), Expect = 1.500e-72
Identity = 110/160 (68.75%), Postives = 129/160 (80.62%), Query Frame = 3
Query: 201 MSGIAAARLKQERKDWRRDPDRPFGWWTRLSANPDGSSSIMKWECGLPGPKNTNWEGGEYRIHMEFTEDYPSKPPKCKFVPPLFHPNVYPSGTICLSILNEGQGWRPSITIKQMLHGIFELLDNPNPDDPAQSEAYQLFVNNKAEYDRRVLIEAKKNPPA 680
MSGIA ARL++ERK WRRD P G+ + D S+ +++WECGLPGP +T+W GG Y + MEFTEDYPSKPPKCKFVPPLFHPNVYPSGTICLSIL+E +GWRP+ITIKQML GI +L D PNP+ PAQSEAYQLFV NK EY RRV +EA+KN P+
Sbjct: 1 MSGIAEARLREERKAWRRD--HPVGFHAKPMLKDDSSTDLLRWECGLPGPADTDWAGGLYTVTMEFTEDYPSKPPKCKFVPPLFHPNVYPSGTICLSILDEDEGWRPAITIKQMLLGIHDLFDTPNPNSPAQSEAYQLFVTNKEEYKRRVRLEAQKNIPS 158
BLAST of mRNA_Ecto-sp6_S_contig100.742.1 vs. uniprot
Match:
A0A7S4AH06_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AH06_9STRA)
HSP 1 Score: 236 bits (601), Expect = 8.030e-72
Identity = 108/158 (68.35%), Postives = 131/158 (82.91%), Query Frame = 3
Query: 204 SGIAAARLKQERKDWRRDPDRPFGWWTRLSANPDGSSSIMKWECGLPGPKNTNWEGGEYRIHMEFTEDYPSKPPKCKFVPPLFHPNVYPSGTICLSILNEGQGWRPSITIKQMLHGIFELLDNPNPDDPAQSEAYQLFVNNKAEYDRRVLIEAKKNPP 677
SGIA RL +ERK WRRD PF ++ R ++ DGSS IMKWE G+PG + T+WE G +++ MEF+EDYPSKPPKCKFVPPLFHPNVYPSGTICLSILNE +GWRP+IT+KQ+L GI +LL++PNP+ PAQSEAYQLF++NKAEY RRV EA+KN P
Sbjct: 3 SGIARGRLAEERKAWRRD--HPFAFYARPTSKGDGSSDIMKWEAGIPGKEGTDWENGVFKVSMEFSEDYPSKPPKCKFVPPLFHPNVYPSGTICLSILNEEEGWRPAITLKQVLIGIQDLLNDPNPNSPAQSEAYQLFIHNKAEYKRRVQAEARKNTP 158
BLAST of mRNA_Ecto-sp6_S_contig100.742.1 vs. uniprot
Match:
B8BY49_THAPS (Ubiquitin conjugating enzyme n=2 Tax=Thalassiosirales TaxID=33847 RepID=B8BY49_THAPS)
HSP 1 Score: 236 bits (601), Expect = 8.870e-72
Identity = 107/159 (67.30%), Postives = 130/159 (81.76%), Query Frame = 3
Query: 204 SGIAAARLKQERKDWRRDPDRPFGWWTRLSANPDGSSSIMKWECGLPGPKNTNWEGGEYRIHMEFTEDYPSKPPKCKFVPPLFHPNVYPSGTICLSILNEGQGWRPSITIKQMLHGIFELLDNPNPDDPAQSEAYQLFVNNKAEYDRRVLIEAKKNPPA 680
SGIA RL +ERK WRRD P+G++ R + DGSS +MKWE G+PG + T+WE G Y++ +EF+++YPSKPPKCKFVPPLFHPNVYPSGTICLSILNE +GWRP+IT+KQML GI +LLD PNP+ PAQSEAY LF+NNKAEY RRV EA+KN P+
Sbjct: 4 SGIARGRLAEERKAWRRD--HPYGFYARPVSRGDGSSDLMKWETGIPGKEGTDWESGVYKVMLEFSDEYPSKPPKCKFVPPLFHPNVYPSGTICLSILNEEEGWRPAITVKQMLLGIQDLLDTPNPNSPAQSEAYNLFINNKAEYKRRVKAEARKNTPS 160
BLAST of mRNA_Ecto-sp6_S_contig100.742.1 vs. uniprot
Match:
A0A7S2Y0C7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y0C7_9STRA)
HSP 1 Score: 235 bits (600), Expect = 1.690e-71
Identity = 105/162 (64.81%), Postives = 134/162 (82.72%), Query Frame = 3
Query: 192 RQPMSGIAAARLKQERKDWRRDPDRPFGWWTRLSANPDGSSSIMKWECGLPGPKNTNWEGGEYRIHMEFTEDYPSKPPKCKFVPPLFHPNVYPSGTICLSILNEGQGWRPSITIKQMLHGIFELLDNPNPDDPAQSEAYQLFVNNKAEYDRRVLIEAKKNPP 677
R GIA RL +ERK WR+D P+G++ R + D S+++MKWECG+PGP+ T+WEGG Y++ MEF+E+YPSKPPKCKFVPPLFHPNVYPSGT+CLSILNE + WRP+ITIKQML GI +LLDNPNP+ PAQS+AYQL++ ++AEY+RRV +EA+KN P
Sbjct: 8 RMSAGGIARGRLIEERKAWRKD--HPYGFYARPMMSDDNSTNLMKWECGMPGPEGTDWEGGMYKLTMEFSEEYPSKPPKCKFVPPLFHPNVYPSGTVCLSILNEEEDWRPAITIKQMLLGIQDLLDNPNPNSPAQSDAYQLYITDRAEYNRRVRMEARKNIP 167
BLAST of mRNA_Ecto-sp6_S_contig100.742.1 vs. uniprot
Match:
A0A7S1FY89_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FY89_9STRA)
HSP 1 Score: 234 bits (597), Expect = 4.120e-71
Identity = 106/159 (66.67%), Postives = 131/159 (82.39%), Query Frame = 3
Query: 207 GIAAARLKQERKDWRRDPDRPFGWWTRLSANPDGSSSIMKWECGLPGPKNTNWEGGEYRIHMEFTEDYPSKPPKCKFVPPLFHPNVYPSGTICLSILNEGQGWRPSITIKQMLHGIFELLDNPNPDDPAQSEAYQLFVNNKAEYDRRVLIEAKKNPPAA 683
GIA RL +ERK WR+D PFG++ R A+ DGSS++MKWE G+PG ++WEGG Y++ MEF+E+YPSKPPKCKF PPLFHPNVYPSGTICLSILNE +GWRP+IT+KQM+ GI +LLD+PNP+ PAQSEAY L++ NKAEY RRV +EAK+N P A
Sbjct: 10 GIARGRLSEERKAWRKD--HPFGFYARPVASGDGSSNMMKWEVGIPGKAGSDWEGGLYKVSMEFSEEYPSKPPKCKFTPPLFHPNVYPSGTICLSILNEEEGWRPAITLKQMVLGIQDLLDDPNPNSPAQSEAYNLYMRNKAEYSRRVRVEAKRNAPPA 166
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig100.742.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 25
0 1 Expect = 1.24e-116 / Id = 100.00 Expect = 2.54e-74 / Id = 67.92 Expect = 5.21e-74 / Id = 68.79 Expect = 3.94e-73 / Id = 68.99 Expect = 1.03e-72 / Id = 68.99 Expect = 1.50e-72 / Id = 68.75 Expect = 8.03e-72 / Id = 68.35 Expect = 8.87e-72 / Id = 67.30 Expect = 1.69e-71 / Id = 64.81 Expect = 4.12e-71 / Id = 66.67 Sequence D7FRN0_ECTSI A0A7S3NHG5_9STRA A0A835YNI1_9STRA A0A6U0IJL9_9STRA A0A448ZL65_9STRA D7G3Z7_ECTSI A0A7S4AH06_9STRA B8BY49_THAPS A0A7S2Y0C7_9STRA A0A7S1FY89_9STRA Pages
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Taxonomic scope Eukaryota Stop 1 Start 1 Seed ortholog score 352.8 Seed ortholog evalue 8.4e-95 Seed eggNOG ortholog 2880.D7FRN0 Preferred name hus5 Model size 1679 KEGG ko ko:K10577 KEGG Pathway ko03013,ko04064,ko04120,ko05206,map03013,map04064,map04120,map05206 KEGG Module M00427 Hectar predicted targeting category other localisation GOs GO:0000003,GO:0000022,GO:0000070,GO:0000122,GO:0000226,GO:0000228,GO:0000278,GO:0000280,GO:0000785,GO:0000790,GO:0000792,GO:0000793,GO:0000794,GO:0000795,GO:0000819,GO:0001101,GO:0002178,GO:0003006,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005654,GO:0005694,GO:0005720,GO:0005737,GO:0005783,GO:0005789,GO:0005829,GO:0006066,GO:0006355,GO:0006357,GO:0006464,GO:0006508,GO:0006511,GO:0006629,GO:0006643,GO:0006644,GO:0006665,GO:0006667,GO:0006670,GO:0006672,GO:0006684,GO:0006686,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0007052,GO:0007059,GO:0007275,GO:0008134,GO:0008150,GO:0008152,GO:0008610,GO:0008641,GO:0008654,GO:0009056,GO:0009057,GO:0009058,GO:0009719,GO:0009725,GO:0009737,GO:0009790,GO:0009791,GO:0009793,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010033,GO:0010154,GO:0010468,GO:0010506,GO:0010508,GO:0010556,GO:0010558,GO:0010604,GO:0010605,GO:0010629,GO:0012505,GO:0016020,GO:0016043,GO:0016239,GO:0016241,GO:0016604,GO:0016605,GO:0016740,GO:0016874,GO:0016877,GO:0016925,GO:0017059,GO:0018193,GO:0018205,GO:0019219,GO:0019222,GO:0019538,GO:0019637,GO:0019751,GO:0019787,GO:0019789,GO:0019899,GO:0019904,GO:0019941,GO:0019948,GO:0022402,GO:0022414,GO:0030148,GO:0030163,GO:0031211,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031329,GO:0031331,GO:0031399,GO:0031401,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0031984,GO:0032268,GO:0032270,GO:0032446,GO:0032501,GO:0032502,GO:0032991,GO:0033233,GO:0033235,GO:0033993,GO:0034311,GO:0034312,GO:0034641,GO:0035339,GO:0036211,GO:0042175,GO:0042221,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043603,GO:0043604,GO:0043632,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044255,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044271,GO:0044281,GO:0044283,GO:0044388,GO:0044422,GO:0044424,GO:0044425,GO:0044427,GO:0044428,GO:0044432,GO:0044444,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0045892,GO:0045934,GO:0046165,GO:0046173,GO:0046467,GO:0046511,GO:0046512,GO:0046513,GO:0046519,GO:0046520,GO:0048285,GO:0048316,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048608,GO:0048731,GO:0048856,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051173,GO:0051231,GO:0051246,GO:0051247,GO:0051252,GO:0051253,GO:0051276,GO:0051338,GO:0051347,GO:0051603,GO:0060255,GO:0061458,GO:0061650,GO:0061656,GO:0065007,GO:0065009,GO:0070013,GO:0070647,GO:0071535,GO:0071704,GO:0071840,GO:0080090,GO:0090407,GO:0097164,GO:0097305,GO:0098796,GO:0098813,GO:0098827,GO:0099086,GO:0140014,GO:0140096,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901615,GO:1901617,GO:1901700,GO:1902494,GO:1902679,GO:1902850,GO:1903047,GO:1903182,GO:1903320,GO:1903322,GO:1903506,GO:1903507,GO:1903755,GO:1904502,GO:1904504,GO:1905961,GO:1990234,GO:1990356,GO:2000112,GO:2000113,GO:2001141 Exons 6 EggNOG free text desc. protein modification by small protein conjugation EggNOG OGs COG5078@1,KOG0424@2759 Ec32 ortholog description Ubiquitin-conjugating enzyme/RWD-like Ec32 ortholog Ec-12_002440.1 Cds size 486 COG Functional cat. O Best tax level Eukaryota Best eggNOG OG NA|NA|NA BRITE ko00000,ko00001,ko00002,ko03019,ko04121
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1682348725.2809057-UTR-Ecto-sp6_S_contig100:444194..445187 1682348725.2809057-UTR-Ecto-sp6_S_contig100:444194..445187 Ectocarpus species6 EcLAC_371 UTR Ecto-sp6_S_contig100 444195..445187 - 1682348725.3476117-UTR-Ecto-sp6_S_contig100:449142..449342 1682348725.3476117-UTR-Ecto-sp6_S_contig100:449142..449342 Ectocarpus species6 EcLAC_371 UTR Ecto-sp6_S_contig100 449143..449342 -
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1682348725.2914422-CDS-Ecto-sp6_S_contig100:445187..445254 1682348725.2914422-CDS-Ecto-sp6_S_contig100:445187..445254 Ectocarpus species6 EcLAC_371 CDS Ecto-sp6_S_contig100 445188..445254 - 1682348725.300198-CDS-Ecto-sp6_S_contig100:446070..446199 1682348725.300198-CDS-Ecto-sp6_S_contig100:446070..446199 Ectocarpus species6 EcLAC_371 CDS Ecto-sp6_S_contig100 446071..446199 - 1682348725.3085282-CDS-Ecto-sp6_S_contig100:447009..447080 1682348725.3085282-CDS-Ecto-sp6_S_contig100:447009..447080 Ectocarpus species6 EcLAC_371 CDS Ecto-sp6_S_contig100 447010..447080 - 1682348725.3173306-CDS-Ecto-sp6_S_contig100:447341..447410 1682348725.3173306-CDS-Ecto-sp6_S_contig100:447341..447410 Ectocarpus species6 EcLAC_371 CDS Ecto-sp6_S_contig100 447342..447410 - 1682348725.3267963-CDS-Ecto-sp6_S_contig100:447993..448071 1682348725.3267963-CDS-Ecto-sp6_S_contig100:447993..448071 Ectocarpus species6 EcLAC_371 CDS Ecto-sp6_S_contig100 447994..448071 - 1682348725.337936-CDS-Ecto-sp6_S_contig100:449070..449142 1682348725.337936-CDS-Ecto-sp6_S_contig100:449070..449142 Ectocarpus species6 EcLAC_371 CDS Ecto-sp6_S_contig100 449071..449142 -
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig100.742.1
>prot_Ecto-sp6_S_contig100.742.1 ID=prot_Ecto-sp6_S_contig100.742.1|Name=mRNA_Ecto-sp6_S_contig100.742.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=162bp
MSGIAAARLKQERKDWRRDPDRPFGWWTRLSANPDGSSSIMKWECGLPGP back to top mRNA from alignment at Ecto-sp6_S_contig100:444195..449342-
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig100.742.1 ID=mRNA_Ecto-sp6_S_contig100.742.1|Name=mRNA_Ecto-sp6_S_contig100.742.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=5148bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:444195..449342- (Ectocarpus species6 EcLAC_371)GTGATCTCTGCCAACACCCAAGGGCCGGCGAATAGGACGAATCAGTGGCT
TAGGAAATCGGTGATTCCCGTAGCCATATTAGCTCCGCGGTCACCAACGA
GCTTGAGAGTTTTTTAAAAAATCAACAGTTTGAAGGCAACTGCATCAAAA
GTTTGAGGCAACTGCTTGTTGAATATCGTCATCACCAACAACGGCAACCG
ATGAGCGGAATCGCAGCAGCCCGACTGAAGCAGGAGAGAAAAGACTGGAG
GAGGGATCCAGACAGGCCGTTC GTGAGTGGAGTTGGGGATTGGAAAAGCG
TCTGTTGCTTTGCTATGGAGAGCTATGTAACGTCGCGTTGCAGACCACCA
TCGTCCATGACAGAAGATATCATCCCCCCCGCTCCCCCTGCTGGCCCGAT
TTTTGAAGGCTCGATTACATACCCCACGGCCGAATGAATGGCGGCGCCGA
CAATCGCGGCGTCAGTACTGTCTCGTCGAGGGTATTCTAATATTGTAGTG
TGGTGTGTACATTGTCTCCCGCCCGTGGGGAGAACACGAGTTTTGAAAAT
CGGTCCAAGGGGGTGTGCTATCTCACGTCATCTATACGGCAGTTCATGCA
TGCGTGTATAGACCATTCCCCGGAAAGCTCCTCACGCGCCAGCTTTACCA
GCTCGTAATATGTTCATGTTGGCGAGTTGCCTTAGCCTCTACAATTCCGT
TGCTGTAGGCAATCGCGGGGTGGATGGCTCTCGATCTATCCTCTTGGTCA
CGAACCAAACTTTCTAGAACTTATAGAAGTTTTTCCCCTAGATAGCATAA
AACTATGGGGGAGATGTGGTGATATCAGTTTATATTTATACCCATCCGGT
GTTTTTGTGGTCAACACCTACCTGCTGGCGTCACTGATAAAGTATGCACA
TCGTAGGAGGCGTCGGGGGCGATCTTTAGAGCCCGTTGCCAGCTGCTACC
AGCGAAAGCGAGGAAAGCAAGTGCACACCCATCCTGCACGGCAGCAGCAA
CAGCAGCAGCTACATGTAGCTGATGATTATGAGAGATAAACAGCGCTCTC
AGTCATCCCCTAGCTGACTGGTCATGTCGGGTGAGGTGTGAGCGTGTGCG
CTGGTGACCTTTATGGTGGCGTAGGCTCCATCCATATCTATCTACGCTTG
CTTTGATGTCTCTCTCCGGACCTTCTTTTCGCGCTCTTTTTTTGTTGGAC
CCCTATGTACGGGAGGTGAGATAACAATCGCTGTTTACACGTCGCTAATT
GTGTGCACACGGTTCTGACAGGGCTGGTGGACGAGGCTTTCGGCCAATCC
TGATGGATCGTCGTCGATCATGAAGTGGGAGTGCGGCCTTCCAGGACCG G
TGAGCAGAACGGTTACAACTGCGGTACCAATTTTATCGTAGACAAGGCAG
CAGTTAGTGTTTCATGTATTTTCCTTTCAACATGCATCCCCCCGTACTTG
TATCCAAGAACCTTCTGCGGCAGGCGAATCTTTGTGGTGCGATGTTTCCT
CTTCGGCGTTTGAAATCTCGCACGACTGTTTTCAACAGCCACTACTCAAG
AATCCAGAGCTGTTTGGCGTATTCCCTTCATTCTTCTACCGCTTGACGTC
GGCTACGTCTGTCTTCGTGGCTCCTTGGTCGTGTCCCACAGAACACGAGC
GCCGCGGGAACAGCAGCTGTACAGCTTTTCTACGGCGTCGGTAGCAATGG
TCGTGCCCTTTGGTGTCTTTTCGGGCACCAGGCAAACAACACTGTCGGCT
GTTTTTCTCTCTCCGGGTGAATCGGCAAGTGCTGCCTCCAAGTTTGACCT
GAACGTCGTGCGCTTCTGCTCCCGAGTGTGATACCGTGCACGCCACTTAA
AACGACATCCCTCTCGTCTGATACCTTGCTACACTCCTGTATGCTGCACG
GCGCCGGCATGACCCCCCTCGCGGTTTCGCAGAAGAATACCAACTGGGAG
GGCGGAGAGTACCGGATCCACATGGAGTTCACCGAAGACTACCCCTCGAA
G GTACGTGTTTGTACTTGAAACGTTTGGAGCGCGTTGGCCCTCAAAAGGT
AGAGGTTTATACCATAGGTATTTGTCAATGTCCGACTCCATGCTCACAGA
GAAAGGGCAGACTGAGTCTGTGTTGTGGTTAGTTAGTTCGCGCCGGTTGT
AAGTGTTTGCGATCCCGTGCGTGAATTGCTGTCGTGCTGTGATATGCTCA
CCCGACCGAGCTGTTTTTTGCCTGGCTGGTGCGCTCGTGCCCTTCTCGCC
GCTCCCCCTCAGCCGCCCAAGTGCAAGTTCGTGCCACCCCTGTTCCACCC
CAACGTCTACCCGTCAGGCACCATCTGCCTCAG GTAAGTACGATCCCGGG
GTGGCGAGTAGATTTCGCCGTCGTGACTGTCGCCACGAAACATGTAGGGG
AAATTCTCGAGTTTGCGCCAGGAACCTCTTGTTTTATTTTCTCTGCCTGC
CTTCCGTGTCTCGTTGCGCTCTACATGGGAAGCGTCTGGTAGTCGAGCGT
TTTGAAGTATATCGCAGTTCTCTGCGCGTTGTCAATACATCAATTTTTCG
GCTCAAGTGCCGAACGCTGCAGGCATCACATGCAGCAAGTGCAGCAGTAG
CGCGGGGTTGCCTCTTCCTTGCCGCGAGCGTCCTGCCCGGGAGCTCGTAC
CCTACGTACATATTCAAGTGTTCTTCCACGTATTTTTCGAGGTGCCACCA
CTCGTGAGAAAAAAAAGGTGTGCGCGTATGTGCACGCTCCTCGCGGCGTT
GCAGGTAGCCCGCAAAATCCCGTCCACGCTCGCTTCGTTGGCGCCGTCCT
CCCTTTCCGGGTCGGGTATCAAAAACCCAGCTAGCATTGGCGCGTCCTAC
TGCCGCGTTGTGTAATCGAAAAGGTTGCGTACGCCCCTTCCTGCGCCAAG
CGCACATTGCTCTCTGGCGCTTGTGTGGCTGCTACTTTCTGAGGCACTTC
GTGTTTTGACGATAATTTCCACTGTCAAAAAGGAAGGCAAGGCATGCTGA
TTACACTGCCCCGGTCCATCCCGTAGCTTTTCCACCACGCACGGGACCTA
CCGTCTCTTCAGGGCAGCATCGTGTAGACTTTTATCTTCCGCCGTGAACC
GCAGCGTTGCCACTTTCCCTCCCAATGGCTTTGTTGGTGGCAGCATCCTG
AACGAGGGCCAGGGATGGAGACCAAGCATCACCATCAAGCAGATGCTCCA
TGGGATCTTCGAACTTTTGGACAATCCGAACCCCGACGACCCTGCCCAAT
CAGAGGCCTACCAACTGTTTGT GTGAGTGGCGCTGATGGCCTACACTGCC
GCTATATGCGAGTAGTCGGTGCTGTTGCTATTATAGTATTTGTGGAGTGC
TGATGGTTGTGCGTCGCCGGTTTGAGTGGCCTTCTGTCCGCGTGCGCGGC
TTGTGCGGCTGCGTCTCCTGCTCTGCGTGGTTGTAGTGGCTGCGGCTCCT
GCTCTGCGTGGTTGTAGTGGCTGCGGCTCCTGCTCTGCGTGGTTGTAGTG
GCTGCGGCTCCTGCTCTGCGTGGTTGTAGTGGCTGCGGCTCCTGCTCTGC
GTGGTTGTAGTGGCTGCGGCTCCTGGTGGTTGTAGTGGCTGCGGGTCCTG
CTCTGCGTTGTAGTGGCTGTTTCTTGTGTGCTTTCAACCGTAAGAGGCGA
CAATGAAGGCGCGTACCGGCAGAATGCCACGCGAGCATCCGTGAATAATC
GCTGGTAGAGCATTTTGCCGGCGTGTTGGATGCGTTGAGTCGATTTCCGT
GTTGAGCAAGAGGCATTCGATATCGAGAGTTACTGTTATTGATCGCGTCG
TCGCCAGCTCCCCATCTATTTATCTCTTTGACCAGCGGTGTAACGATTTC
GTCACCAGACAAATCGTTAGATACACGTAGTAACAGACATTTTTTTCCAA
TCTATTCTGGCGTCAGTCTCCACCTTGCAGTATATGAAGCACAGCGGTCA
AGCCATTGACTATCAGTCTCGGGCAGCATGTCCAAGATGCAAACGAATGT
GAACCCATTGTGATCGACCGAACCGATGTGTACCTGCCGCGGTGCGGCGT
GATGTCTCCCCAAACGCTACACAACGCAACACCTACAGGAACAACAAAGC
GGAGTACGACAGGAGGGTGCTCATCGAGGCCAAGAAGAATCCCCCCGCTG
CATAG CACCGCCGCCTGCATATCTATCCATGCACAAGCTGTGGGCACCCT
CATCCTCAAAGTGCCCCTTACGGTTCCCACTGCCTCGTGTGGGGAGCGCG
ATTGAGATGACGGCGCTTGCACGAGACACAACATCGAGCAAAACAAGAGC
TCACAGCACAGTGTACATGCTCGGACAAACGTTGGCGGTACAACGTGTCC
GGTCCAGAAGCAGGTTTAGGCAGCCGATTGGCATGCCCCCACGCTTGACT
AGGTGGTACATACGCAAGTAGTGTGTTCTGTCGTGCGTCGTCTCACCCTC
CTCTCGAGGTTACTGGTGAGGCCGAGTTGCGGTGAGCTCGACACACATGC
AGCCAATTTGTGCCGATCGAATGTAGAGTAAATGGCAGTCGTGGTGCTAA
GCACCGTGTTGCGGGTTCCGGGGCCGTGGTGTATAGTTCATCTTTTCGTT
TGGGCGTTTCAATGTGCTGTCCGAGTGCGTGCCGGCATCCAACGGCAACG
TTAATGTTGGGCGCGTGCATGGTGGCCGTCGGACTGAAGCTGCTCGAACA
TGTTAGCCTTGTGCCCTCGTCTAGTTGTAATTCCATGAACGTGCTCGCCA
TTTCTTGTTGGATCCACTTCCTTCGATTGGACATGGATTCGTCGGTGAGC
ATTTTTTTTTTTTCCCCAGATTTAGGCAAGCTTAGCATCAGGCAGAGCAG
ACGAGGCTCAGAACAAGACCTCGGACGATCCCGGGGCGACGGGTAGACAG
GGAAACCTCAGAACAACGTACAACAGCCTTCTTGTGTGTAGATATGCGTT
TAGAGTTGCTGCCAGGATTTCCGGGCGGATCGCATGCCGTGTCAACATGG
AAAAGAGGGTTTCTAATCGTGCATAGCAGCCAGTATTTTCGTTTCGGGGC
GTTAAGAGGTTTCGCCCGATAGATTGGGTATGCTGCTGTCTACGCGTATG
CGCGGGATTGCCCTACACAAAAAAAAAATTACGTGACTGCTCCGCTGG back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig100:444195..449342-
>mRNA_Ecto-sp6_S_contig100.742.1 ID=mRNA_Ecto-sp6_S_contig100.742.1|Name=mRNA_Ecto-sp6_S_contig100.742.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=486bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:444195..449342- (Ectocarpus species6 EcLAC_371) back to top