mRNA_Ecto-sp6_S_contig100.742.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Homology

BLAST of mRNA_Ecto-sp6_S_contig100.742.1 vs. uniprot
Match: D7FRN0_ECTSI (UBC core domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRN0_ECTSI)

HSP 1 Score: 351 bits (900), Expect = 1.240e-116
Identity = 161/161 (100.00%), Postives = 161/161 (100.00%), Query Frame = 3

Query:  201 MSGIAAARLKQERKDWRRDPDRPFGWWTRLSANPDGSSSIMKWECGLPGPKNTNWEGGEYRIHMEFTEDYPSKPPKCKFVPPLFHPNVYPSGTICLSILNEGQGWRPSITIKQMLHGIFELLDNPNPDDPAQSEAYQLFVNNKAEYDRRVLIEAKKNPPAA 683
            MSGIAAARLKQERKDWRRDPDRPFGWWTRLSANPDGSSSIMKWECGLPGPKNTNWEGGEYRIHMEFTEDYPSKPPKCKFVPPLFHPNVYPSGTICLSILNEGQGWRPSITIKQMLHGIFELLDNPNPDDPAQSEAYQLFVNNKAEYDRRVLIEAKKNPPAA
Sbjct:    1 MSGIAAARLKQERKDWRRDPDRPFGWWTRLSANPDGSSSIMKWECGLPGPKNTNWEGGEYRIHMEFTEDYPSKPPKCKFVPPLFHPNVYPSGTICLSILNEGQGWRPSITIKQMLHGIFELLDNPNPDDPAQSEAYQLFVNNKAEYDRRVLIEAKKNPPAA 161

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BLAST of mRNA_Ecto-sp6_S_contig100.742.1 vs. uniprot
Match: A0A7S3NHG5_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NHG5_9STRA)

HSP 1 Score: 242 bits (618), Expect = 2.540e-74
Identity = 108/159 (67.92%), Postives = 129/159 (81.13%), Query Frame = 3

Query:  201 MSGIAAARLKQERKDWRRDPDRPFGWWTRLSANPDGSSSIMKWECGLPGPKNTNWEGGEYRIHMEFTEDYPSKPPKCKFVPPLFHPNVYPSGTICLSILNEGQGWRPSITIKQMLHGIFELLDNPNPDDPAQSEAYQLFVNNKAEYDRRVLIEAKKNPP 677
            MSGIA  RL +ERK+WRRD   PFG+W R +  PDG++S+++W+CG+PG K T+WE G YR+ MEFTEDYPSKPPKCKF PPLFHPNVYPSGTICLSILNE Q WRP+ITIKQML GI +LLD PNP  PAQ  AY+LF+N+K  Y +R+  EA+KNPP
Sbjct:    1 MSGIARGRLAEERKNWRRD--HPFGFWARPALKPDGTTSLLQWDCGIPGKKGTDWENGVYRVRMEFTEDYPSKPPKCKFTPPLFHPNVYPSGTICLSILNEDQDWRPAITIKQMLLGIQDLLDTPNPRSPAQDAAYKLFINDKNAYSQRIRQEARKNPP 157

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BLAST of mRNA_Ecto-sp6_S_contig100.742.1 vs. uniprot
Match: A0A835YNI1_9STRA (Ubiquitin conjugating enzyme n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNI1_9STRA)

HSP 1 Score: 241 bits (616), Expect = 5.210e-74
Identity = 108/157 (68.79%), Postives = 133/157 (84.71%), Query Frame = 3

Query:  207 GIAAARLKQERKDWRRDPDRPFGWWTRLSANPDGSSSIMKWECGLPGPKNTNWEGGEYRIHMEFTEDYPSKPPKCKFVPPLFHPNVYPSGTICLSILNEGQGWRPSITIKQMLHGIFELLDNPNPDDPAQSEAYQLFVNNKAEYDRRVLIEAKKNPP 677
            GIA ARL +ERK WR+D   P G++ R  +NPD S ++MKW+CG+PG  +++W GG Y++ MEFT++YPSKPPKCKFVPPLFHPNVYPSGT+CLSILNE  GWRP+ITIKQML GI +LLDNPNP+ PAQSEAYQ+FVNN+AEY+RRV +EA+KN P
Sbjct:    4 GIARARLAEERKAWRKD--HPIGFYARPVSNPDNSMNLMKWDCGIPGVASSDWAGGVYKLSMEFTDEYPSKPPKCKFVPPLFHPNVYPSGTVCLSILNEDDGWRPAITIKQMLLGIQDLLDNPNPNSPAQSEAYQMFVNNRAEYNRRVRLEARKNIP 158

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BLAST of mRNA_Ecto-sp6_S_contig100.742.1 vs. uniprot
Match: A0A6U0IJL9_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A6U0IJL9_9STRA)

HSP 1 Score: 239 bits (610), Expect = 3.940e-73
Identity = 109/158 (68.99%), Postives = 132/158 (83.54%), Query Frame = 3

Query:  207 GIAAARLKQERKDWRRDPDRPFGWWTRLSANPDGSSSIMKWECGLPGPKNTNWEGGEYRIHMEFTEDYPSKPPKCKFVPPLFHPNVYPSGTICLSILNEGQGWRPSITIKQMLHGIFELLDNPNPDDPAQSEAYQLFVNNKAEYDRRVLIEAKKNPPA 680
            GIA  RL +ERK+WRRD   PFG++ R  +  DGSS++MKW  G+PG +NT+W GG Y++ +EF+E+YPSKPPKCKFVPPLFHPNVYPSGTICLSILNE +GWRP+ITIKQML GI +LLD+PNP+ PAQSEAYQLF+NNK EY RRV  EA+KN P+
Sbjct:    4 GIARGRLAEERKNWRRD--HPFGFYARPESKGDGSSNLMKWATGIPGKENTDWSGGVYKVTLEFSEEYPSKPPKCKFVPPLFHPNVYPSGTICLSILNEEEGWRPAITIKQMLLGIQDLLDDPNPNSPAQSEAYQLFMNNKPEYKRRVKAEARKNAPS 159

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BLAST of mRNA_Ecto-sp6_S_contig100.742.1 vs. uniprot
Match: A0A448ZL65_9STRA (UBC core domain-containing protein n=2 Tax=Bacillariaceae TaxID=33852 RepID=A0A448ZL65_9STRA)

HSP 1 Score: 238 bits (607), Expect = 1.030e-72
Identity = 109/158 (68.99%), Postives = 131/158 (82.91%), Query Frame = 3

Query:  204 SGIAAARLKQERKDWRRDPDRPFGWWTRLSANPDGSSSIMKWECGLPGPKNTNWEGGEYRIHMEFTEDYPSKPPKCKFVPPLFHPNVYPSGTICLSILNEGQGWRPSITIKQMLHGIFELLDNPNPDDPAQSEAYQLFVNNKAEYDRRVLIEAKKNPP 677
            SGIA  RL +ERK WRRD   PFG++ R ++  DGSS IMKWE G+PG + T+WE G +++ MEF+EDYPSKPPKCKFVPPLFHPNVYPSGTICLSILNE +GWRP+IT+KQ+L GI +LLD+PNP+ PAQSEAYQLF++NK EY RRV  EA+KN P
Sbjct:    3 SGIARGRLVEERKAWRRD--HPFGFYARPTSKGDGSSDIMKWEAGIPGKEGTDWENGVFKVSMEFSEDYPSKPPKCKFVPPLFHPNVYPSGTICLSILNEEEGWRPAITLKQVLIGIQDLLDDPNPNSPAQSEAYQLFIHNKTEYKRRVQAEARKNTP 158

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BLAST of mRNA_Ecto-sp6_S_contig100.742.1 vs. uniprot
Match: D7G3Z7_ECTSI (UBC core domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3Z7_ECTSI)

HSP 1 Score: 238 bits (606), Expect = 1.500e-72
Identity = 110/160 (68.75%), Postives = 129/160 (80.62%), Query Frame = 3

Query:  201 MSGIAAARLKQERKDWRRDPDRPFGWWTRLSANPDGSSSIMKWECGLPGPKNTNWEGGEYRIHMEFTEDYPSKPPKCKFVPPLFHPNVYPSGTICLSILNEGQGWRPSITIKQMLHGIFELLDNPNPDDPAQSEAYQLFVNNKAEYDRRVLIEAKKNPPA 680
            MSGIA ARL++ERK WRRD   P G+  +     D S+ +++WECGLPGP +T+W GG Y + MEFTEDYPSKPPKCKFVPPLFHPNVYPSGTICLSIL+E +GWRP+ITIKQML GI +L D PNP+ PAQSEAYQLFV NK EY RRV +EA+KN P+
Sbjct:    1 MSGIAEARLREERKAWRRD--HPVGFHAKPMLKDDSSTDLLRWECGLPGPADTDWAGGLYTVTMEFTEDYPSKPPKCKFVPPLFHPNVYPSGTICLSILDEDEGWRPAITIKQMLLGIHDLFDTPNPNSPAQSEAYQLFVTNKEEYKRRVRLEAQKNIPS 158

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BLAST of mRNA_Ecto-sp6_S_contig100.742.1 vs. uniprot
Match: A0A7S4AH06_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AH06_9STRA)

HSP 1 Score: 236 bits (601), Expect = 8.030e-72
Identity = 108/158 (68.35%), Postives = 131/158 (82.91%), Query Frame = 3

Query:  204 SGIAAARLKQERKDWRRDPDRPFGWWTRLSANPDGSSSIMKWECGLPGPKNTNWEGGEYRIHMEFTEDYPSKPPKCKFVPPLFHPNVYPSGTICLSILNEGQGWRPSITIKQMLHGIFELLDNPNPDDPAQSEAYQLFVNNKAEYDRRVLIEAKKNPP 677
            SGIA  RL +ERK WRRD   PF ++ R ++  DGSS IMKWE G+PG + T+WE G +++ MEF+EDYPSKPPKCKFVPPLFHPNVYPSGTICLSILNE +GWRP+IT+KQ+L GI +LL++PNP+ PAQSEAYQLF++NKAEY RRV  EA+KN P
Sbjct:    3 SGIARGRLAEERKAWRRD--HPFAFYARPTSKGDGSSDIMKWEAGIPGKEGTDWENGVFKVSMEFSEDYPSKPPKCKFVPPLFHPNVYPSGTICLSILNEEEGWRPAITLKQVLIGIQDLLNDPNPNSPAQSEAYQLFIHNKAEYKRRVQAEARKNTP 158

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BLAST of mRNA_Ecto-sp6_S_contig100.742.1 vs. uniprot
Match: B8BY49_THAPS (Ubiquitin conjugating enzyme n=2 Tax=Thalassiosirales TaxID=33847 RepID=B8BY49_THAPS)

HSP 1 Score: 236 bits (601), Expect = 8.870e-72
Identity = 107/159 (67.30%), Postives = 130/159 (81.76%), Query Frame = 3

Query:  204 SGIAAARLKQERKDWRRDPDRPFGWWTRLSANPDGSSSIMKWECGLPGPKNTNWEGGEYRIHMEFTEDYPSKPPKCKFVPPLFHPNVYPSGTICLSILNEGQGWRPSITIKQMLHGIFELLDNPNPDDPAQSEAYQLFVNNKAEYDRRVLIEAKKNPPA 680
            SGIA  RL +ERK WRRD   P+G++ R  +  DGSS +MKWE G+PG + T+WE G Y++ +EF+++YPSKPPKCKFVPPLFHPNVYPSGTICLSILNE +GWRP+IT+KQML GI +LLD PNP+ PAQSEAY LF+NNKAEY RRV  EA+KN P+
Sbjct:    4 SGIARGRLAEERKAWRRD--HPYGFYARPVSRGDGSSDLMKWETGIPGKEGTDWESGVYKVMLEFSDEYPSKPPKCKFVPPLFHPNVYPSGTICLSILNEEEGWRPAITVKQMLLGIQDLLDTPNPNSPAQSEAYNLFINNKAEYKRRVKAEARKNTPS 160

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BLAST of mRNA_Ecto-sp6_S_contig100.742.1 vs. uniprot
Match: A0A7S2Y0C7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y0C7_9STRA)

HSP 1 Score: 235 bits (600), Expect = 1.690e-71
Identity = 105/162 (64.81%), Postives = 134/162 (82.72%), Query Frame = 3

Query:  192 RQPMSGIAAARLKQERKDWRRDPDRPFGWWTRLSANPDGSSSIMKWECGLPGPKNTNWEGGEYRIHMEFTEDYPSKPPKCKFVPPLFHPNVYPSGTICLSILNEGQGWRPSITIKQMLHGIFELLDNPNPDDPAQSEAYQLFVNNKAEYDRRVLIEAKKNPP 677
            R    GIA  RL +ERK WR+D   P+G++ R   + D S+++MKWECG+PGP+ T+WEGG Y++ MEF+E+YPSKPPKCKFVPPLFHPNVYPSGT+CLSILNE + WRP+ITIKQML GI +LLDNPNP+ PAQS+AYQL++ ++AEY+RRV +EA+KN P
Sbjct:    8 RMSAGGIARGRLIEERKAWRKD--HPYGFYARPMMSDDNSTNLMKWECGMPGPEGTDWEGGMYKLTMEFSEEYPSKPPKCKFVPPLFHPNVYPSGTVCLSILNEEEDWRPAITIKQMLLGIQDLLDNPNPNSPAQSDAYQLYITDRAEYNRRVRMEARKNIP 167

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BLAST of mRNA_Ecto-sp6_S_contig100.742.1 vs. uniprot
Match: A0A7S1FY89_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FY89_9STRA)

HSP 1 Score: 234 bits (597), Expect = 4.120e-71
Identity = 106/159 (66.67%), Postives = 131/159 (82.39%), Query Frame = 3

Query:  207 GIAAARLKQERKDWRRDPDRPFGWWTRLSANPDGSSSIMKWECGLPGPKNTNWEGGEYRIHMEFTEDYPSKPPKCKFVPPLFHPNVYPSGTICLSILNEGQGWRPSITIKQMLHGIFELLDNPNPDDPAQSEAYQLFVNNKAEYDRRVLIEAKKNPPAA 683
            GIA  RL +ERK WR+D   PFG++ R  A+ DGSS++MKWE G+PG   ++WEGG Y++ MEF+E+YPSKPPKCKF PPLFHPNVYPSGTICLSILNE +GWRP+IT+KQM+ GI +LLD+PNP+ PAQSEAY L++ NKAEY RRV +EAK+N P A
Sbjct:   10 GIARGRLSEERKAWRKD--HPFGFYARPVASGDGSSNMMKWEVGIPGKAGSDWEGGLYKVSMEFSEEYPSKPPKCKFTPPLFHPNVYPSGTICLSILNEEEGWRPAITLKQMVLGIQDLLDDPNPNSPAQSEAYNLYMRNKAEYSRRVRVEAKRNAPPA 166

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp6_S_contig100.742.1 vs. uniprot

BLAST of mRNA_Ecto-sp6_S_contig100.742.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25

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POSITION

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Match Name	E-value	Identity	Description
D7FRN0_ECTSI	1.240e-116	100.00	UBC core domain-containing protein n=2 Tax=Ectocar...	[more]
A0A7S3NHG5_9STRA	2.540e-74	67.92	Hypothetical protein n=1 Tax=Aureoumbra lagunensis...	[more]
A0A835YNI1_9STRA	5.210e-74	68.79	Ubiquitin conjugating enzyme n=1 Tax=Tribonema min...	[more]
A0A6U0IJL9_9STRA	3.940e-73	68.99	Hypothetical protein n=1 Tax=Minutocellus polymorp...	[more]
A0A448ZL65_9STRA	1.030e-72	68.99	UBC core domain-containing protein n=2 Tax=Bacilla...	[more]
D7G3Z7_ECTSI	1.500e-72	68.75	UBC core domain-containing protein n=2 Tax=Ectocar...	[more]
A0A7S4AH06_9STRA	8.030e-72	68.35	Hypothetical protein n=1 Tax=Pseudo-nitzschia aust...	[more]
B8BY49_THAPS	8.870e-72	67.30	Ubiquitin conjugating enzyme n=2 Tax=Thalassiosira...	[more]
A0A7S2Y0C7_9STRA	1.690e-71	64.81	Hypothetical protein n=1 Tax=Fibrocapsa japonica T...	[more]
A0A7S1FY89_9STRA	4.120e-71	66.67	Hypothetical protein n=1 Tax=Corethron hystrix Tax...	[more]

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Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp6_S_contig100.742.1	prot_Ecto-sp6_S_contig100.742.1	Ectocarpus species6 EcLAC_371	polypeptide	Ecto-sp6_S_contig100 445188..449142 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1682348725.2809057-UTR-Ecto-sp6_S_contig100:444194..445187	1682348725.2809057-UTR-Ecto-sp6_S_contig100:444194..445187	Ectocarpus species6 EcLAC_371	UTR	Ecto-sp6_S_contig100 444195..445187 -
1682348725.3476117-UTR-Ecto-sp6_S_contig100:449142..449342	1682348725.3476117-UTR-Ecto-sp6_S_contig100:449142..449342	Ectocarpus species6 EcLAC_371	UTR	Ecto-sp6_S_contig100 449143..449342 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1682348725.2914422-CDS-Ecto-sp6_S_contig100:445187..445254	1682348725.2914422-CDS-Ecto-sp6_S_contig100:445187..445254	Ectocarpus species6 EcLAC_371	CDS	Ecto-sp6_S_contig100 445188..445254 -
1682348725.300198-CDS-Ecto-sp6_S_contig100:446070..446199	1682348725.300198-CDS-Ecto-sp6_S_contig100:446070..446199	Ectocarpus species6 EcLAC_371	CDS	Ecto-sp6_S_contig100 446071..446199 -
1682348725.3085282-CDS-Ecto-sp6_S_contig100:447009..447080	1682348725.3085282-CDS-Ecto-sp6_S_contig100:447009..447080	Ectocarpus species6 EcLAC_371	CDS	Ecto-sp6_S_contig100 447010..447080 -
1682348725.3173306-CDS-Ecto-sp6_S_contig100:447341..447410	1682348725.3173306-CDS-Ecto-sp6_S_contig100:447341..447410	Ectocarpus species6 EcLAC_371	CDS	Ecto-sp6_S_contig100 447342..447410 -
1682348725.3267963-CDS-Ecto-sp6_S_contig100:447993..448071	1682348725.3267963-CDS-Ecto-sp6_S_contig100:447993..448071	Ectocarpus species6 EcLAC_371	CDS	Ecto-sp6_S_contig100 447994..448071 -
1682348725.337936-CDS-Ecto-sp6_S_contig100:449070..449142	1682348725.337936-CDS-Ecto-sp6_S_contig100:449070..449142	Ectocarpus species6 EcLAC_371	CDS	Ecto-sp6_S_contig100 449071..449142 -