mRNA_Ecto-sp6_S_contig100.730.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig100.730.1
Unique NamemRNA_Ecto-sp6_S_contig100.730.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
[Close]
BLAST of mRNA_Ecto-sp6_S_contig100.730.1 vs. uniprot
Match: A0A835YJC7_9STRA (UDP-glucuronate decarboxylase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJC7_9STRA)

HSP 1 Score: 540 bits (1392), Expect = 5.940e-186
Identity = 260/342 (76.02%), Postives = 294/342 (85.96%), Query Frame = 2 
Query:   65 TENEFASKLHAAQARPFLRVLVTGGAGFLGSHLCRRLLDEGHQVICLDNFFTSQKLNIQDLFDRPNFEFVRHDITEPFRAEVDQIYNMACPASPVHYQYNPIKTTKVSFFGAMNMLGLAKRVNARILQASTSEVYGDAQESPQTESYWGNVNCHGVRACYDEGKRVAETLFFDFHRQHKIEVRVARIFNTFGPGMHPYDGRVVSNFIMQALSGEDITIYGDGGQTRSFCFVDDLIEGLVRLMNNDTEIGPMNIGNPTEFTIKQLAEMTVRLTKSPSKIIYKPLPQDDPKQRRPDISFAKSALDWEPNVALEEGLAKTIEYFSKLDMRNFKKPTTHDAHKNSE 1090
            T NEFA  L +AQ  PFLRVLVTGGAGFLGSHLCRRLL  GH+VICLDNFFTSQKLNI DL D PNFEFVRHD+T PF AEVD+I+N+ACPASPVHYQYNPIKT K+SF GA+NMLGLAKRV ARILQASTSEVYGDAQ++PQTE YWGNVN  GVRACYDEGKRVAETLF D+HRQH +++RVARIFNT+GP MHPYDGRVVSNFIMQAL+ +DITIYG G QTRSFCFVDDL++GL+RLM++D  I P+N+GNP EFTI +LA++ ++L  S S+II KPLPQDDPKQR+PDI+ A  ALDW+P   LEEGL  TIEYF  LDMR FKKPT H+AH NSE
Sbjct:   22 TANEFALALRSAQLNPFLRVLVTGGAGFLGSHLCRRLLAAGHEVICLDNFFTSQKLNIVDLMDHPNFEFVRHDVTVPFFAEVDRIFNLACPASPVHYQYNPIKTAKISFCGALNMLGLAKRVRARILQASTSEVYGDAQQTPQTEQYWGNVNPIGVRACYDEGKRVAETLFLDYHRQHSVQIRVARIFNTYGPSMHPYDGRVVSNFIMQALANDDITIYGSGTQTRSFCFVDDLVDGLLRLMDSDM-ITPVNLGNPNEFTILELAQLIIKLAGSKSRIINKPLPQDDPKQRKPDITVAMRALDWQPRTQLEEGLRATIEYFRHLDMRKFKKPTEHNAHANSE 362
[Close]
BLAST of mRNA_Ecto-sp6_S_contig100.730.1 vs. uniprot
Match: A0A7R9YP38_DIALT (UDP-glucuronate decarboxylase n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A7R9YP38_DIALT)

HSP 1 Score: 524 bits (1349), Expect = 6.970e-180
Identity = 245/339 (72.27%), Postives = 287/339 (84.66%), Query Frame = 2 
Query:   95 AAQARPFLRVLVTGGAGFLGSHLCRRLLDEGHQVICLDNFFTSQKLNIQDLFDRPNFEFVRHDITEPFRAEVDQIYNMACPASPVHYQYNPIKTTKVSFFGAMNMLGLAKRVNARILQASTSEVYGDAQESPQTESYWGNVNCHGVRACYDEGKRVAETLFFDFHRQHKIEVRVARIFNTFGPGMHPYDGRVVSNFIMQALSGEDITIYGDGGQTRSFCFVDDLIEGLVRLMNNDTEIGPMNIGNPTEFTIKQLAEMTVRLTKSPSKIIYKPLPQDDPKQRRPDISFAKSALDWEPNVALEEGLAKTIEYFSKLDMRNFKKPTTHDAHKNSEAEEKRAR 1111
            +++ + F R+LVTGGAGFLGSHLCRRL+ EGH V+C+DNFFTSQK N+ DL D+PNFE VRHD+T PF  E DQIYNMACPASPVHYQ+NP+KT K S  G MNMLGLAKRV ARILQASTSEVYGD   +PQ ESYWG+VNC GVR+CYDEGKR AETL FD+HRQ++++VRV RIFNT+GPGMHPYDGRVVSNFI+QAL+G+DITIYGDG QTRSFCFVDDL++G+VR MN D  IGP+N+GNP EFTIKQLAE T++LT S SK+I +PLP DDPKQRRPDI+ A+  L WEP V L+EGL KTI+YF+ +DMR FKKPT HDAH NS  +EK A+
Sbjct:   17 SSETKEFKRILVTGGAGFLGSHLCRRLVREGHDVVCMDNFFTSQKTNVTDLLDKPNFELVRHDVTMPFFIECDQIYNMACPASPVHYQFNPVKTMKTSVLGMMNMLGLAKRVRARILQASTSEVYGDPNITPQPESYWGHVNCTGVRSCYDEGKRCAETLCFDYHRQNQVDVRVIRIFNTYGPGMHPYDGRVVSNFIVQALNGQDITIYGDGSQTRSFCFVDDLVDGIVRFMNQDECIGPVNLGNPHEFTIKQLAERTIQLTGSKSKLINEPLPHDDPKQRRPDITLARELLKWEPKVQLDEGLQKTIDYFAHVDMRTFKKPTQHDAHTNSRVDEKDAK 355
[Close]
BLAST of mRNA_Ecto-sp6_S_contig100.730.1 vs. uniprot
Match: D7G8T6_ECTSI (UDP-glucuronate decarboxylase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8T6_ECTSI)

HSP 1 Score: 519 bits (1336), Expect = 2.810e-179
Identity = 261/271 (96.31%), Postives = 263/271 (97.05%), Query Frame = 2 
Query:  344 PVHYQYNPIKTTKVSFFGAMNMLGLAKRVNARILQASTSEVYGDAQESPQTESYWGNVNCHGVRACYDEGKRVAETLFFDFHRQHKIEVRVARIFNTFGPGMHPYDGRVVSNFIMQALSGEDITIYGDGGQTRSFCFVDDLIEGLVRLMNNDTEIGPMNIGNPTEFTIKQLAEMTVRLTKSPSKIIYKPLPQDDPKQRRPDISFAKSALDWEPNVALEEGLAKTIEYFSKLDMRNFKKPTTHDAHKNSEAEEKRARNASPVRSNGISAATK 1156
            PVH+        KVSFFGAMNMLGLAKRVNARILQASTSEVYGDAQESPQTESYWGNVNCHGVRACYDEGKRVAETLFFDFHRQHKIEVRVARIFNTFGPGMHPYDGRVVSNFIMQALSGEDITIYGDGGQTRSFCFVDDLIEGLVRLMNNDTEIGPMNIGNPTEFTIKQLAEMTVRLTKSPSKIIYKPLPQDDPKQRRPDISFAKSALDWEPNVALEEGLAKTIEYFSKLDMRNFKKPTTHDAHKNSEAEEKRA+NASPVRSNGISAATK
Sbjct:    9 PVHHGL----AVKVSFFGAMNMLGLAKRVNARILQASTSEVYGDAQESPQTESYWGNVNCHGVRACYDEGKRVAETLFFDFHRQHKIEVRVARIFNTFGPGMHPYDGRVVSNFIMQALSGEDITIYGDGGQTRSFCFVDDLIEGLVRLMNNDTEIGPMNIGNPTEFTIKQLAEMTVRLTKSPSKIIYKPLPQDDPKQRRPDISFAKSALDWEPNVALEEGLAKTIEYFSKLDMRNFKKPTTHDAHKNSEAEEKRAKNASPVRSNGISAATK 275
[Close]
BLAST of mRNA_Ecto-sp6_S_contig100.730.1 vs. uniprot
Match: A0A2R5FZD8_9STRA (UDP-glucuronate decarboxylase n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5FZD8_9STRA)

HSP 1 Score: 521 bits (1343), Expect = 3.280e-179
Identity = 248/327 (75.84%), Postives = 278/327 (85.02%), Query Frame = 2 
Query:  113 FLRVLVTGGAGFLGSHLCRRLLDEGHQVICLDNFFTSQKLNIQDLFDRPNFEFVRHDITEPFRAEVDQIYNMACPASPVHYQYNPIKTTKVSFFGAMNMLGLAKRVNARILQASTSEVYGDAQESPQTESYWGNVNCHGVRACYDEGKRVAETLFFDFHRQHKIEVRVARIFNTFGPGMHPYDGRVVSNFIMQALSGEDITIYGDGGQTRSFCFVDDLIEGLVRLMNNDTEIGPMNIGNPTEFTIKQLAEMTVRLTKSPSKIIYKPLPQDDPKQRRPDISFAKSAL-DWEPNVALEEGLAKTIEYFSKLDMRNFKKPTTHDAHKNSE 1090
            F RVLVTGGAGFLGSHLCRRL+ EGH+VICLDNFFTSQ++NI DL D+PNFE VRHD+TEPF AEVDQIYN+ACPASPVHYQYNPIKT K SF G+MN+LGLAKR  +RILQASTSEVYGD   SPQ E YWG+VN +GVR+CYDEGKR AETLFFD++RQ+ +++RV RIFNTFGPGMHPYDGRVVSNFIMQAL G DITIYGDG QTRSFCFVDDLIEG+VR MN +  +GP+N+GNP EFTIK+LAE+ V LT S SKIIY PLP DDPKQRRPDI+ AK  L +WEP V L +GL KTIEYF  LDMR +K PT H AH NSE
Sbjct:   12 FQRVLVTGGAGFLGSHLCRRLVAEGHEVICLDNFFTSQRINIADLLDKPNFELVRHDVTEPFHAEVDQIYNLACPASPVHYQYNPIKTMKTSFMGSMNLLGLAKRTKSRILQASTSEVYGDPNVSPQPEEYWGHVNPNGVRSCYDEGKRAAETLFFDYYRQNNVDIRVLRIFNTFGPGMHPYDGRVVSNFIMQALQGRDITIYGDGSQTRSFCFVDDLIEGMVRFMNQEETVGPVNLGNPCEFTIKELAELVVELTGSTSKIIYMPLPNDDPKQRRPDITKAKKYLQNWEPQVQLRDGLQKTIEYFKNLDMRRYKDPTKHTAHANSE 338
[Close]
BLAST of mRNA_Ecto-sp6_S_contig100.730.1 vs. uniprot
Match: A0A7S2WMC7_9STRA (UDP-glucuronate decarboxylase n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2WMC7_9STRA)

HSP 1 Score: 519 bits (1337), Expect = 8.720e-178
Identity = 242/336 (72.02%), Postives = 284/336 (84.52%), Query Frame = 2 
Query:   95 AAQARPFLRVLVTGGAGFLGSHLCRRLLDEGHQVICLDNFFTSQKLNIQDLFDRPNFEFVRHDITEPFRAEVDQIYNMACPASPVHYQYNPIKTTKVSFFGAMNMLGLAKRVNARILQASTSEVYGDAQESPQTESYWGNVNCHGVRACYDEGKRVAETLFFDFHRQHKIEVRVARIFNTFGPGMHPYDGRVVSNFIMQALSGEDITIYGDGGQTRSFCFVDDLIEGLVRLMNNDTEIGPMNIGNPTEFTIKQLAEMTVRLTKSPSKIIYKPLPQDDPKQRRPDISFAKSALDWEPNVALEEGLAKTIEYFSKLDMRNFKKPTTHDAHKNSEAEEK 1102
            ++ A PF R+LVTGGAGFLG+HLCRRL++EGH+VICLDN+FT Q+LN+ DL D+PNFE +RHD+TEPF AEVDQIYN+ACPASPVHYQYNPIKT KVS  GAMNMLGLAKR  AR+LQASTSEVYGD   SPQTE YWG+VN  GVR+CYDEGKR AETLFFD++RQ+ +++RV RIFNT+GPGM+P+DGRVVSNFIMQAL GEDITIYGDG QTRSFCFVDDLI+G+VRLMN +  +GP+N+GNP EFTIK+LAE  V +T S SKIIY PLP DDPKQR+PDI+ AK  L WEPN  L +GL KTI+YF  +D+R +K PT H AH NSE  E+
Sbjct:   37 SSDAEPFKRILVTGGAGFLGTHLCRRLVNEGHEVICLDNYFTGQRLNVTDLLDKPNFELIRHDVTEPFHAEVDQIYNLACPASPVHYQYNPIKTMKVSLLGAMNMLGLAKRTKARVLQASTSEVYGDPSISPQTEDYWGHVNPIGVRSCYDEGKRAAETLFFDYNRQNNVDIRVIRIFNTYGPGMNPFDGRVVSNFIMQALKGEDITIYGDGSQTRSFCFVDDLIDGMVRLMNQEETLGPVNVGNPDEFTIKELAERIVEMTGSKSKIIYLPLPNDDPKQRKPDITKAKKFLKWEPNYKLVQGLEKTIKYFQDIDLRRYKNPTKHTAHANSEQVER 372
[Close]
BLAST of mRNA_Ecto-sp6_S_contig100.730.1 vs. uniprot
Match: R1E5N3_EMIHU (UDP-glucuronate decarboxylase n=4 Tax=Eukaryota TaxID=2759 RepID=R1E5N3_EMIHU)

HSP 1 Score: 510 bits (1314), Expect = 8.930e-175
Identity = 237/342 (69.30%), Postives = 285/342 (83.33%), Query Frame = 2 
Query:   95 AAQARPFLRVLVTGGAGFLGSHLCRRLLDEGHQVICLDNFFTSQKLNIQDLFDRPNFEFVRHDITEPFRAEVDQIYNMACPASPVHYQYNPIKTTKVSFFGAMNMLGLAKRVNARILQASTSEVYGDAQESPQTESYWGNVNCHGVRACYDEGKRVAETLFFDFHRQHKIEVRVARIFNTFGPGMHPYDGRVVSNFIMQALSGEDITIYGDGGQTRSFCFVDDLIEGLVRLMNNDTEIGPMNIGNPTEFTIKQLAEMTVRLTKSPSKIIYKPLPQDDPKQRRPDISFAKSALDWEPNVALEEGLAKTIEYFSKLDMRNFKKPTTHDAHKNSEAEEKRARNAS 1120
            A +  P+LRVLVTGGAGFLGSHLCRRL+ +GH+V+CLDNFFTSQK N+ DL  +PNFE +RHD+T PF  E DQIYNMACPASPVHYQYNP+KT K S  GAMNMLGLAKRV AR+LQASTSEVYGD + SPQ E YWG VNC+GVR+CYDEGKR AETL FD+HRQ+ +++RVARIFNT+GPGMHPYDGRVVSNFIMQA++GEDIT+YG+G QTRSFCFVDDL++GL++LMN  + IGP+NIGNP EFTIKQLAE+ ++ T S SKI++ PLP DDP+QR+PDI+ A+  L WEP + LE+GL K + YFS LD+  F+KPT H AH N++A+   A  AS
Sbjct:    6 AEKKDPYLRVLVTGGAGFLGSHLCRRLVAQGHEVVCLDNFFTSQKTNVADLIGKPNFELIRHDVTTPFFIECDQIYNMACPASPVHYQYNPVKTMKTSVLGAMNMLGLAKRVKARLLQASTSEVYGDPEVSPQPEEYWGKVNCNGVRSCYDEGKRAAETLCFDYHRQNGVDIRVARIFNTYGPGMHPYDGRVVSNFIMQAINGEDITVYGEGKQTRSFCFVDDLVDGLMKLMNQTSTIGPVNIGNPGEFTIKQLAELAIKHTGSSSKIVHLPLPGDDPQQRKPDITKAREILGWEPKIKLEDGLPKAVAYFSSLDLSRFRKPTKHTAHLNTDAQAADASRAS 347
[Close]
BLAST of mRNA_Ecto-sp6_S_contig100.730.1 vs. uniprot
Match: A0A7S3BWP6_9EUKA (UDP-glucuronate decarboxylase n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3BWP6_9EUKA)

HSP 1 Score: 506 bits (1303), Expect = 9.760e-173
Identity = 237/340 (69.71%), Postives = 283/340 (83.24%), Query Frame = 2 
Query:  110 PFLRVLVTGGAGFLGSHLCRRLLDEGHQVICLDNFFTSQKLNIQDLFDRPNFEFVRHDITEPFRAEVDQIYNMACPASPVHYQYNPIKTTKVSFFGAMNMLGLAKRVNARILQASTSEVYGDAQESPQTESYWGNVNCHGVRACYDEGKRVAETLFFDFHRQHKIEVRVARIFNTFGPGMHPYDGRVVSNFIMQALSGEDITIYGDGGQTRSFCFVDDLIEGLVRLMNNDTEIGPMNIGNPTEFTIKQLAEMTVR------LTKSPSKIIYKPLPQDDPKQRRPDISFAKSALDWEPNVALEEGLAKTIEYFSKLDMRNFKKPTTHDAHKNSEAEEKRAR 1111
            PFLR+LVTGG GFLGSHLCRRL++EGH V+ LDNFFTSQK N++DL  +PNFE +RHD+T+ F  EVDQIYNMACPASPVHYQYNP+KT K S  GA+NMLGLAKRV ARILQASTSEVYGD + SPQ E YWG+VNC+GVR+CYDEGKR AETL FD+HRQ+ +++RVARIFNT+GPGMHPYDGRVVSNF++QA++GEDIT+YG+G QTR+FCFVDDL++GL+RLMN D  IGP+NIGNP EFTIKQLAE+ ++      +T   SKIIY PLP DDPKQR+PDI+ AK  L WEP + LE+G+ K  EYFS LD+  FKKPT H AH N+E  E+ A+
Sbjct:   29 PFLRILVTGGCGFLGSHLCRRLVNEGHDVVALDNFFTSQKTNVKDLIGKPNFEVIRHDVTKEFFIEVDQIYNMACPASPVHYQYNPVKTMKTSVVGALNMLGLAKRVKARILQASTSEVYGDPKISPQPEEYWGHVNCNGVRSCYDEGKRAAETLCFDYHRQNGVDIRVARIFNTYGPGMHPYDGRVVSNFLVQAINGEDITVYGEGEQTRAFCFVDDLVDGLIRLMNQDVTIGPINIGNPGEFTIKQLAELAIKTVGVSKVTGKQSKIIYLPLPGDDPKQRKPDITKAKKYLGWEPKIPLEQGIVKAAEYFSSLDLSRFKKPTKHTAHLNTEQIEESAK 368
[Close]
BLAST of mRNA_Ecto-sp6_S_contig100.730.1 vs. uniprot
Match: A0A7S4LL95_9EUGL (UDP-glucuronate decarboxylase n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4LL95_9EUGL)

HSP 1 Score: 501 bits (1290), Expect = 3.540e-171
Identity = 238/327 (72.78%), Postives = 275/327 (84.10%), Query Frame = 2 
Query:  119 RVLVTGGAGFLGSHLCRRLLDEGHQVICLDNFFTSQKLNIQDLFDRPNFEFVRHDITEPFRAEVDQIYNMACPASPVHYQYNPIKTTKVSFFGAMNMLGLAKRVNARILQASTSEVYGDAQES--PQTESYWGNVNCHGVRACYDEGKRVAETLFFDFHRQHKIEVRVARIFNTFGPGMHPYDGRVVSNFIMQALSGEDITIYGDGGQTRSFCFVDDLIEGLVRLMNNDTEI-GPMNIGNPTEFTIKQLAEMTVRLTKSPSKIIYKPLPQDDPKQRRPDISFAKSALDWEPNVALEEGLAKTIEYFSKLDMRNFKKPTTHDAHKNSE 1090
            R+LVTGGAGFLGSH+C RL+DEGH VICLDNFFTSQK NI+ LF RPNFEFVRHD+TEP R EVD+I+N+ACPASPVHYQYNPIKT K S+ GA NMLG+AKR NARILQ+STSEVYGD      PQ E Y GNV+C G+R+CYDEGKR AETLFFD+HRQH ++++V RIFNT+GP MHPYDGRVVSNFI+QA+ GEDITIYGDG QTRSFCFVDDL+E ++R+M++DT   GP+NIGNP EFTIK+LAE+ + LT S SKIIY PLPQDDP QR+PDI+ AK  LDWEP V L EGLAKTIEYF  LD+  + KPT H AH+NSE
Sbjct:   13 RILVTGGAGFLGSHVCERLVDEGHDVICLDNFFTSQKDNIRHLFGRPNFEFVRHDVTEPIRMEVDKIWNLACPASPVHYQYNPIKTMKTSWLGASNMLGMAKRCNARILQSSTSEVYGDPTPEFHPQPEEYRGNVSCIGIRSCYDEGKRAAETLFFDYHRQHGVDIKVVRIFNTYGPRMHPYDGRVVSNFILQAIKGEDITIYGDGSQTRSFCFVDDLVEAMMRMMDDDTGFTGPVNIGNPGEFTIKELAELIIELTGSKSKIIYLPLPQDDPLQRKPDIALAKERLDWEPKVQLREGLAKTIEYFKGLDLGKYSKPTNHTAHRNSE 339
[Close]
BLAST of mRNA_Ecto-sp6_S_contig100.730.1 vs. uniprot
Match: A0A7S0EJQ0_9EUKA (UDP-glucuronate decarboxylase n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0EJQ0_9EUKA)

HSP 1 Score: 498 bits (1282), Expect = 8.840e-170
Identity = 234/328 (71.34%), Postives = 274/328 (83.54%), Query Frame = 2 
Query:  110 PFLRVLVTGGAGFLGSHLCRRLLDEGHQVICLDNFFTSQKLNIQDLFDRPNFEFVRHDITEPFRAEVDQIYNMACPASPVHYQYNPIKTTKVSFFGAMNMLGLAKRVNARILQASTSEVYGDAQESPQTESYWGNVNCHGVRACYDEGKRVAETLFFDFHRQHKIEVRVARIFNTFGPGMHPYDGRVVSNFIMQALSGEDITIYGDGGQTRSFCFVDDLIEGLVRLMNNDTEIGPMNIGNPTEFTIKQLAEMTVRLTKSPSKIIYKPLPQDDPKQRRPDISFAKSALDWEPNVALEEGLAKTIEYFSKLDMRNFKKPTTHDAHKNSEA 1093
            PFLR+LVTGG GFLGSHLCRRL++EGH VI LDNFFTSQK N++DL D+PNFE +R D+T+ F  EVDQIYNMACPASPVHYQYNP+KT K S  G MNMLGLAKRV ARILQASTSEVYGD + SPQ E YWG+VNC GVR+CYDEGKR AETL FD+HRQ+ +++R+ARIFNT+GPGMHPYDGRVVSNFI+QA+ GEDIT+YG+G QTR+FC+VDDL++GL+RLMN +  IGP+NIGNP EFTIKQLAE+ V    S SKIIY PLP DDPKQR+PDI+ A+  L WEP V LE+GL   I YF +LD+  FKKPT H AH N++A
Sbjct:   21 PFLRILVTGGCGFLGSHLCRRLVNEGHDVIALDNFFTSQKSNVKDLLDKPNFEVIRGDVTKEFFIEVDQIYNMACPASPVHYQYNPVKTMKTSVMGMMNMLGLAKRVKARILQASTSEVYGDPEISPQPEEYWGHVNCTGVRSCYDEGKRAAETLCFDYHRQNGVDIRIARIFNTYGPGMHPYDGRVVSNFIVQAIKGEDITVYGEGQQTRAFCYVDDLVDGLIRLMNQEHTIGPVNIGNPGEFTIKQLAELCVEKVGSKSKIIYLPLPGDDPKQRKPDITKARKYLQWEPKVPLEKGLDFAITYFRELDLGRFKKPTKHTAHLNTDA 348
[Close]
BLAST of mRNA_Ecto-sp6_S_contig100.730.1 vs. uniprot
Match: A0A813GYL9_POLGL (UDP-glucuronate decarboxylase n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813GYL9_POLGL)

HSP 1 Score: 497 bits (1279), Expect = 1.340e-168
Identity = 237/366 (64.75%), Postives = 285/366 (77.87%), Query Frame = 2 
Query:    8 GATQEKNKPFVHIMAAMGKTENEFASKLHAAQARPFLRVLVTGGAGFLGSHLCRRLLDEGHQVICLDNFFTSQKLNIQDLFDRPNFEFVRHDITEPFRAEVDQIYNMACPASPVHYQYNPIKTTKVSFFGAMNMLGLAKRVNARILQASTSEVYGDAQESPQTESYWGNVNCHGVRACYDEGKRVAETLFFDFHRQHKIEVRVARIFNTFGPGMHPYDGRVVSNFIMQALSGEDITIYGDGGQTRSFCFVDDLIEGLVRLMNNDTEIGPMNIGNPTEFTIKQLAEMTVRLTKSPSKIIYKPLPQDDPKQRRPDISFAKSALDWEPNVALEEGLAKTIEYFSKLDMRNFKKPTTHDAHKNSEAEEKR 1105
            GA Q+  KP+   ++  G    E A      + + F R+LVTGGAGFLGS LCRRLL EGH+V+CLDN+FTSQ+ NI D    P FE +RHD+T PF  E DQIYNMACPASPVHYQ+NPIKTTKVSF G M+M+GLAKRV ARILQASTSE+YGD + SPQ+E YWG+VN  GVR+CYDEGKRVAETL FD+ R + +++RV RIFNT+GPGMHPYDGRVVSNFI+QAL+ EDITIYGDG QTRSF FVDD ++GL+R+MN +  +GP+NIGNP +FT+KQLAE  + +  S SKIIY PLP DDPKQR+PDI+ AK  LDWEP+V L EGL KTI YF  LD+R F KPT H AH  ++A+ K+
Sbjct:   32 GAEQDARKPWYRGLSRQGAVACE-AKANKDQEVKKFKRILVTGGAGFLGSALCRRLLAEGHEVMCLDNYFTSQRSNIADFIGHPKFELIRHDVTTPFFCECDQIYNMACPASPVHYQFNPIKTTKVSFLGTMHMMGLAKRVKARILQASTSEIYGDPEVSPQSEEYWGHVNTIGVRSCYDEGKRVAETLAFDYMRSNNVDIRVVRIFNTYGPGMHPYDGRVVSNFIIQALNNEDITIYGDGSQTRSFSFVDDTVDGLIRMMNQEETVGPINIGNPNKFTVKQLAETVIEMVGSKSKIIYMPLPGDDPKQRKPDITRAKKYLDWEPHVQLREGLVKTIAYFKALDLRQFSKPTAHTAHLTTDADAKK 396
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig100.730.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YJC7_9STRA5.940e-18676.02UDP-glucuronate decarboxylase n=1 Tax=Tribonema mi... [more]
A0A7R9YP38_DIALT6.970e-18072.27UDP-glucuronate decarboxylase n=2 Tax=Diacronema l... [more]
D7G8T6_ECTSI2.810e-17996.31UDP-glucuronate decarboxylase n=1 Tax=Ectocarpus s... [more]
A0A2R5FZD8_9STRA3.280e-17975.84UDP-glucuronate decarboxylase n=1 Tax=Hondaea ferm... [more]
A0A7S2WMC7_9STRA8.720e-17872.02UDP-glucuronate decarboxylase n=1 Tax=labyrinthuli... [more]
R1E5N3_EMIHU8.930e-17569.30UDP-glucuronate decarboxylase n=4 Tax=Eukaryota Ta... [more]
A0A7S3BWP6_9EUKA9.760e-17369.71UDP-glucuronate decarboxylase n=1 Tax=Haptolina er... [more]
A0A7S4LL95_9EUGL3.540e-17172.78UDP-glucuronate decarboxylase n=1 Tax=Eutreptiella... [more]
A0A7S0EJQ0_9EUKA8.840e-17071.34UDP-glucuronate decarboxylase n=1 Tax=Phaeocystis ... [more]
A0A813GYL9_POLGL1.340e-16864.75UDP-glucuronate decarboxylase n=2 Tax=Polarella gl... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig100contigEcto-sp6_S_contig100:333694..342328 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score521.2
Seed ortholog evalue4.1e-145
Seed eggNOG ortholog2880.D7G8T6
Model size2000
KEGG rclassRC00402,RC00508
KEGG koko:K01710,ko:K08678
KEGG ReactionR01384,R06513
KEGG Pathwayko00520,ko00521,ko00523,ko00525,ko01055,ko01100,ko01130,map00520,map00521,map00523,map00525,map01055,map01100,map01130
KEGG ModuleM00361,M00793
Hectar predicted targeting categoryother localisation
Exons11
EggNOG free text desc.UDP-glucuronate decarboxylase activity
EggNOG OGsCOG0451@1,KOG1429@2759
Ec32 ortholog descriptionNAD(P)-binding domain
Ec32 orthologEc-12_002350.1
EC4.1.1.35,4.2.1.46
Cds size1113
COG Functional cat.GM
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig100.730.1prot_Ecto-sp6_S_contig100.730.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig100 334638..342282 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348724.0250669-UTR-Ecto-sp6_S_contig100:333693..3341701682348724.0250669-UTR-Ecto-sp6_S_contig100:333693..334170Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig100 333694..334170 -
1682348724.0369315-UTR-Ecto-sp6_S_contig100:334273..3346371682348724.0369315-UTR-Ecto-sp6_S_contig100:334273..334637Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig100 334274..334637 -
1682348724.158275-UTR-Ecto-sp6_S_contig100:342282..3423281682348724.158275-UTR-Ecto-sp6_S_contig100:342282..342328Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig100 342283..342328 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348724.0463288-CDS-Ecto-sp6_S_contig100:334637..3347671682348724.0463288-CDS-Ecto-sp6_S_contig100:334637..334767Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig100 334638..334767 -
1682348724.0553246-CDS-Ecto-sp6_S_contig100:335502..3356121682348724.0553246-CDS-Ecto-sp6_S_contig100:335502..335612Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig100 335503..335612 -
1682348724.063898-CDS-Ecto-sp6_S_contig100:336076..3361901682348724.063898-CDS-Ecto-sp6_S_contig100:336076..336190Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig100 336077..336190 -
1682348724.0723863-CDS-Ecto-sp6_S_contig100:336941..3370871682348724.0723863-CDS-Ecto-sp6_S_contig100:336941..337087Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig100 336942..337087 -
1682348724.084125-CDS-Ecto-sp6_S_contig100:337647..3377791682348724.084125-CDS-Ecto-sp6_S_contig100:337647..337779Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig100 337648..337779 -
1682348724.100622-CDS-Ecto-sp6_S_contig100:338352..3384161682348724.100622-CDS-Ecto-sp6_S_contig100:338352..338416Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig100 338353..338416 -
1682348724.118376-CDS-Ecto-sp6_S_contig100:338850..3389311682348724.118376-CDS-Ecto-sp6_S_contig100:338850..338931Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig100 338851..338931 -
1682348724.1309376-CDS-Ecto-sp6_S_contig100:339413..3395541682348724.1309376-CDS-Ecto-sp6_S_contig100:339413..339554Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig100 339414..339554 -
1682348724.1410162-CDS-Ecto-sp6_S_contig100:341738..3417861682348724.1410162-CDS-Ecto-sp6_S_contig100:341738..341786Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig100 341739..341786 -
1682348724.1499429-CDS-Ecto-sp6_S_contig100:342135..3422821682348724.1499429-CDS-Ecto-sp6_S_contig100:342135..342282Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig100 342136..342282 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig100.730.1

>prot_Ecto-sp6_S_contig100.730.1 ID=prot_Ecto-sp6_S_contig100.730.1|Name=mRNA_Ecto-sp6_S_contig100.730.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=371bp
MAAMGKTENEFASKLHAAQARPFLRVLVTGGAGFLGSHLCRRLLDEGHQV
ICLDNFFTSQKLNIQDLFDRPNFEFVRHDITEPFRAEVDQIYNMACPASP
VHYQYNPIKTTKVSFFGAMNMLGLAKRVNARILQASTSEVYGDAQESPQT
ESYWGNVNCHGVRACYDEGKRVAETLFFDFHRQHKIEVRVARIFNTFGPG
MHPYDGRVVSNFIMQALSGEDITIYGDGGQTRSFCFVDDLIEGLVRLMNN
DTEIGPMNIGNPTEFTIKQLAEMTVRLTKSPSKIIYKPLPQDDPKQRRPD
ISFAKSALDWEPNVALEEGLAKTIEYFSKLDMRNFKKPTTHDAHKNSEAE
EKRARNASPVRSNGISAATK*
back to top

mRNA from alignment at Ecto-sp6_S_contig100:333694..342328-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig100.730.1 ID=mRNA_Ecto-sp6_S_contig100.730.1|Name=mRNA_Ecto-sp6_S_contig100.730.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=8635bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:333694..342328- (Ectocarpus species6 EcLAC_371)
CAGGTTGGGCGCCACACAAGAGAAGAACAAACCCTTTGTACACATCATGG
CGGCAATGGGTAAGACTGAGAATGAATTCGCCTCGAAGCTCCACGCGGCG
CAGGCCAGACCCTTCCTGAGGGTTCTGGTTACTGGTGGGGCCGGTTTCCT
CGGGTCCCATCTCTGCCGAAGGTTGCTGGACGAAGGTCACCAGGTGAGGA
TCGGCAGAGGAGCTGGTCGACGCGGAACCATGTGGTCGGTATTCTAAACA
GCATAGCAAGCCGCCGCCGGCGTTTCTCCCTCATGGTGTGCAAGCATCGC
GTCTCGCAGCATCGCCTTGCTGAAGCCTGCGCGTCGGTCATGGGCACGGG
GGGTGTGCCCTGCGTATGCTCTGTTGCCACGCTTGTTGGCCATGCCAAAA
GGGGCTCTTTGCAGGCCACGGCCTGTTTTCTTCTCTGCTGCTCCCAGAAT
GATTACCCCGTTTTCAAGTTCCCGAGGTCGGTGGCTAACCATCGCGGGCA
TCCCTCTTGTGTCTCTCCTCGACGGGCCTGTTCCGCCCGCAGGTCATCTG
CCTCGACAACTTCTTCACCAGTCAGAAGCTTAACATCCAGGTGAGCAGCG
CGCGTTGCTCTCTTGCTAGAACTAACCGGTCACCGGAACAAATGTAGTCA
AAAGTGCGGATGAAATGGAACGTGAGAGGAAAAAGGGACGGCGGACGGAC
CATTTGTTCTGACAACGAGCGGCTGGCACAAGGCTTCGGGCCTCGGGCCT
CGGGCGGCGGGCGTGCTTGCGGCCCGTCGTTAGTGTAGATTCAGACACCG
CGTTCTCCCTTTTGACACTCGGATGGTTTACGGGCTTTTGGTATGCGCTC
CCCAAGATCCGGCAACGAAGAAGCTGCCCGGCACGAAAAAAACGGCTACA
GGACACCTACCTATATGGGAAGCAAATACTGCTGTAACAAGCAGCGTTGT
AGAGCTCCTGCTACTAAAATTCTTCGGAGAACCGTCCACAGAGAGCGATT
GCGTCACACGGACCCGACCGATGGAACCACACGATGCCTAGCATCGCCTG
CCCGCTGCAAAACCTGTTTGTAATGTTGCGGAGGCCTGCCCCCCGCGGGA
GAAATATTGCATCTCTTATTCATATTCATTGGCGTGACCTTTCTTTGCGT
TGTGGCGTCGTGCGGGGGCAAAAAAATTCGGCAGTTCGCCAAAAACTACA
TTTTTTAGTGGTTTGTGTGCGGTGCGCGTCAACGTGGTTTGTTCACTGGT
GACTGTACGGAGGAAACGGAGTGAGAGACGCGTGGGATCGTGGGCTACAG
CAGCAGTACGTGCTCATGCAATCTATTTACCCCGGTTTCTTTTTCCGTTT
TCATCGGGCGAATATAATGTAGAAAGTTCATGTATGTATGGAATCTCCCC
GGATTTCGGCGGCGGTAACGCGGTCACCTTGTACGTTGTGCGTACGCACG
CACACGTCACCAGTTGACCTACGGATGAGGTTTAAGTTTTCTGTTGTGTT
CTTAGCCTCAAGTCTGTGTAGTATGACATGACGAATACATCTCTATCTGT
TGAGTCTAAGATAGGTTTGCAATGAATCCATAGCGTCAGCGATGGCTACC
TGTGCTTCCACGATTTCCCGAGCAGCACACCATATAGATATCTCCCCCGT
TTGCAACAGAGTCAACAAGACAGCAGTGTTGTAGGCATGTTGTGCATCTA
TCTGTATGTTATTCTGCGAAGGTGTAGACGGAAGGTGTTCGGTAGTTGGT
TCGTGGGGTGTGTTGTTGGTGGCACCCGTACAGGATTTTTGCGGAACAAG
TAAGTTTCAGGTTTTATGTGCGCGCACCAAAGTACCGTTGTTTTTATGTG
CAAGCGGGCATGGGAGAACATGGAGACTCTGAGACGCTACGAACCTTCAC
TCAGGCGTTTTTTGGTCCCACACCCTTCCGTGTTACCTCGGTCAATGAAT
CGATTTTGTACACCCGCTGCGTTGGGTAGCGGGTGCTCAGCGTCAGAGGC
TGTGGTGGAGGTTTCACTCAAGACTTTGCTATTACCGAGTGAACAGCAGG
GCAAACAAGCCCTGCACACTTGAAGGGGGTTCGCCCTTCCAGTAACACAT
ACTGTACAACATACGTACGAAAGCCCCCCATGTACATCTCCGTAGATCCG
TATGTAGTGCTCAGTACACCCAACACGCTGCTCGCTGAAACATTCCGCAC
CGTGCGGGGTGTCCCATCGTAAAAAAGTGGCGTGTATACTGCTGTACATG
ATCTTCTTCATGAAGACCCGAAACCCAAACGACGGGAAAATTTGTCGTCC
CCCATGTTGTTGTAGATACACGTCGTTTGGTGGCAAAACGCATGCCTACT
TTGTGTAGCATAACCCTACAGCAGTAGAGCAGTAAGGACTAAGAACCCCA
GCAGAGAGAGGTGGTTCTCAAGTGCGGGCGGCAACTGTATGTACAGGGAT
GAGATATTTGACCTTCAGATCGCTCTCGTTTGTCACGGCGGTCCAACCCA
CGCACGTACCGCGCGGGGTCGGACAGAGATATTATCCTCGTGCCTCGTGT
CAAGTCCAGAAACGGGTGGCTGTGTTTAGTGGGTCTGGCGCAGTGCCCGA
GGTTTGTAGTTGGTCCTGTCTACTTCTTACACTTTCAAACATACCAAAAA
CATGTGGTGCTTACTTAAACATTATTATTGCTTGGCCATTTTGTCTGCAC
CCCCCCCCCCCTTCGCCTTGGATCGATTTTCCTTTGCGGAATGTGGTTTG
CCACACGTCGCATGTGTTTCGCAGGACCTGTTCGACCGGCCCAACTTTGA
GTTCGTCCGTCACGACATCACGGAGCCGTTCCGGGCGGAGGTGGACCAGA
TCTACAACATGGCGTGCCCGGCGTCTCCGGTGCACTACCAGTACAACCCC
ATCAAGACCACCAAGGTGCATATACCGTCGTGCCGAGTGAAGGGCGTATT
CAAGGAGTATGAGTCAAGGTTGTGTTGTAGCCGCGTACACCAGGAGTCTT
TCCTGTCTCGCTCTTGGCCACGACCAGCCGACGGGGTTTTCCTTGTGCTG
CACAGGAGAGAGGTTTCTGTCTGCGTGCGTGTGCATGTCGAGGCTTCCTG
ACGCACCGCCTGAGAAACAGGTGTTGGTCTCTCGGCAGGCAGATGTTAGC
TTGTTGATTTATCACCCGAAGCTTATCTTCTCTTGCATGCTTACAATGAT
TCGCTTCCACCCCATTCACCATGCTCTTGCGGTAAAGGTGAGTGTAGTGT
GCGAACTCCGTTATCCTCGAGGTCTGAGCCCACCGAACGCTTGTTGTTCT
GCGTAGTCTTTTTCCTGTCTGTCTACCTGGCGTCGACCCCGCTAACACCA
TCTGACCGGTTCGCGTGTACAATTTCGTGTTTGGAATACAAAAACAGGTT
TCCTTTTTCGGAGCGATGAACATGCTGGGGCTGGCGAAGCGAGTAAACGC
CCGCATCCTCCAGGCGTCCACTAGCGAGGTAGGCAGCCAACCGTATGTAG
CCACCGATCGGGGACGCGATGGCAATGACTGTCGGTAGTGTGCCCACGTG
GTACTGCTGTAGAAACGTAGAGCGTCTTTTTGTGTTTGTGTAACAACCAG
CCGGAAATCGATTGCGCCTGGTGCACCGCTGTCGGAAGGCATCCTTGCGG
CACACGTTCTTGTAGATTCCGCGAGTTCAGCTTGTGGCGCAGCAGATTGT
GATGTCATGGTTCGATTTGCGTGCTCTCTCCGTCTGCTTTGTTGATTGTG
AGTTGCCTGCTTCCACTTGTGGTGCGAAGTCGTACGGGCACTCTGCCTGC
CAACAAACCTTGGTACATGTTCCATGCTCTTCTTGCGGCGGTGTAACCGC
TCCCGTATCCTCTCCTTGGTGTTCTCTTGGTTGTCCCCATTTCTGGCTTG
TGTCTTCGCCAGGTGTATGGGGATGCGCAAGAGAGTCCGCAGACGGAGTC
GTACTGGGGTAACGTCAACTGTCACGGTGCGTACCCAGGCGACTTCTAGT
CACCCCCCCGCTTGTTCGGGTGTCGGAGAGGAAGTAGTTACTGCGTGTGT
GGGACCGGCGACACTGTCTTGTCTTAAGGGCCATGTTTGAAATACATGTA
GCCGTCTCTTCGTGGTGGAAAAGACGTGGTTTCTTCCTTGCCTGCCGGGG
CTTGGTTGCGTATCGGTTTTCGCGATGAAGGCGGGGCACGGTGCACGCGC
GTCGACTGCAGCCACGGCGAAAGCACCTACTCTGTGCGTTGGCCCGACGT
GGCGTTCCTTGTCATGTCAAGAGAGTTGAATTGTGTTGCTTGGCGCGTCT
GACACACACATGTCAGCGTCCAAGAGTTTGATCGAGATCATGGTCGCGCA
CTGTTGTCCGGGTGTGGTGTGCAATAACTTGGTGGAGAAATTGGGACCGA
CTGCCGTGTGTAACAACTTTTCAACTCCATCTGTCAAGAAGTCAAGACCT
ACATGCAAACACACGAAAACGAAATGAATGTTTCGATTGGATTAAACCCT
CTCTTTTTTTTTTTTTTTTTGCACTACAACGCCATGCGTGTGAATGTAGG
CGTGCGAGCTTGCTACGACGAGGGCAAGCGGGTAGCCGAGACCCTCTTCT
TCGACTTCCACAGGCAGCACAAGATCGAAGTACGCGTCGCTCGTATCTTC
AACACGTTCGGCCCAGGGATGCACCCGTACGGTGAGGAAAATAATTTCCT
TGCCTCCACTGTTCTCGTGTTCCGGTGATGTTGCTACTGTGGCACCCCCA
TCAAAAATGTCGCGAGGCGTATATACGCCAGGGCTGGCGAGCGCGAAGCG
CGCTTCAGTAGCTCGTTGTATCGACGTAGGCCTACCCACGGCACAACGAC
CTAGCTTGGGGTCAGGGTTAGATTTTAGGGGTAGGTTAGGCCCAGTGAGG
CCTAGCGCCGTGGTGTTGCCTGAGGGCTGGAAACCTGCCAAATGGTTGCT
TTGATTTCGTGTCTACCTCTAACCACAACCCAAAAACTGTTTAACTGGCA
AGTGCAAACAACGCCAGCGCTGGCGTATATACGGGGGTCGCATCAAGTGT
AGCGGTCCAAAGTGGGGTACCGTAACACAGGCATGTTGTCATAGCAATGG
TGTGTTCCCTTCACTACACATGGTGCTTGTCAAACACTCGACTCAGTAGA
TTTGTCCAAGGATTCTCCAAACATTTCCCGCCGTTTGTGGCTTGCGCGCG
CCTGACCCCGCCCCGCTCCACCTCGCTCGCCGCTGCTGCAGACGGGCGGG
TGGTGAGCAACTTCATCATGCAGGCTCTCAGCGGGGAGGACATCACCATC
TACGGGGACGGCGGCCAGACTCGCTCGTTCTGCTTCGTGGACGACCTGAT
CGAGGGGCTCGTGAGGCTCATGAACAACGACACGGAGGTGTGTTTGGTGT
GTTACGAAGCGTGAGAAGAGGGGCGTCTATCTGTGTTGGTCGGGTTGGCT
TAGTTAGCATGGCCATGACCTGGCGTGGTTCCGGTCGTTTTTCGGAGGGA
AATCGTACACCGCGGAAAGCGTGCGACTTGCCGGTAATTGCTGTGAGGTC
GTGTGGAATATTACGTGGCGTTTAAACGTTGCTGGTGCGGTACTCGCGGC
GGAGAGAGTCGATGCCCAGCCCACGATAACGTGCCTCCGAGAAAGTCGTT
GCAAAGAGCTGACATCGTGGGAGCACGCAGCCTTTCGATGCGTGGCACAC
GCACGAACGTTGTCCAACAAGCCACTACAGTACGGCGGTGTGGCTCTCCG
TTTTGAGTTTTTCGCAATTACCGGAGCATTGATGGCGGTCGGTCAAAGGA
ACTCCGTCTTTTTTCGACAGGGACCTCTCGGTGCGCACGAGCCCGGCGCA
GGACAGGCATAACTACATAGGTTTGATCCTTTTCCTAGGGCCCACGCCAC
AGCAATACCGCGTTAACGTGTAGGTGTGACCACCTTCCTGGATCTTGTCA
GTTGTCGTTGTCGTCGTCGTCGTTGTTGGTGCTTCTACTGATGCCACTGC
TGCTGCTGCACCCTCGATGATGTTTCCTTTTGTCTCGTCCCTAAACGGCG
ACAGCGTCGAGTCCACATGCAGAATACCCCCACTCCCACCTCACCTTACG
TAACAATCGAACTCGTGCGCTTCTTTCGGCCGTTACAGATCGGGCCCATG
AACATCGGCAACCCGACAGAGTTCACGATCAAGCAGCTAGCGGAGATGAC
CGTCCGCCTCACCAAGTCTCCCAGCAAGATCATCTACAAGCCGCTGCCGC
AGGTAAAAAAGAAACGGCGCCGCGCTTTGATCTTGTTTTATTTGGGCAAC
GAGTTTGACAGGTTCAGATGCACGTCATAACCTCCACCTTTGATGCAGAG
TTTTAAGGGTACCACGGCGGTTTTGACCGCTTGGGCACGAGGTAGTATTC
TTGTCCTTGAGTGGAGAGAGCAAGCATAACCCTTTTCTCGCGCCAGAGGG
CGAAAGACATGCACAGCAGAGGAACTGTGTTCCGTCTGTCGCCGCATCAG
AAAGCTCTTCAGGCCGAGTGAGGTAAGAGGCACTGGACGGGACTGTAGAG
GTTAGCCTGGGAACAACGTAAGGTCCGTTTGGATCGAACATGGTTCTGTT
CTATTCTGTTCGCTGCTGTGTTTGTTGAGAGAAAGCCAGAAATGTGCGCA
ACGTCAACGCCCATCACATGCTGTGCACATTGATACTGATGGATCCGACT
GATCGATCTATGGCAGGACGACCCGAAGCAGCGCCGGCCTGACATCAGCT
TCGCGAAGAGCGCGTTGGATTGGGAGCCAAACGTGGCCCTCGAGGAGGGC
CTGGCCAAAACCATCGAATACTTCAGGTATGTCTTACGATACGAGTGCCT
GTAGCTATTCGCCGCTGCTGAGGTAGCAAGGGTTTGCACAATGCGCGTGG
GTGTGTTTCGTGGCATACGCATCATGGGGGCTGTCTTTTTGTGAAGTGTT
GGAAGATGCTTGGCCTGGCGTAGGCCACTCAGTATCAGACGCCCGACATC
TGCTGGCCCGTGGTTTTGCGCACGCTGTTGCTTGCTTGGTTATGCCGGGG
CTCGGTCCGTCAAAGCGGCGACGACTCTCTCGACATACTAGCGCTGAGCT
GTCTGACGTAGCGGTGTGTCCACGTATCGTGTTGGTGTTATTCGCTGCTG
TGTGGGGGCGTTCGTACTTGCTATGGACATTAAATACTCCATGTGAAGAC
CTCGTTGGTGTTTTTAGTTATCGAAACGGTGTGTGTTGTTGTGGAAGTAC
GGTGGGGGGGCCTCGGTAGTGCCAGTGTGGACCAGACCAACATGCGGGCA
CTTTTCAGAGTACAGAATAAGTTGGTCATTCCCTCTGTGCCCGCCGAAAA
CACAGGCACCATACCGGGCACAGGCACTTTCCAGTTGGCACTACTGAAGC
CCCCGCTGTAGCTATTATTTATTTTTTGCCCCCCCATGTGCTTGCACGAG
CACCGCAGAATTGATACAGAGCTCCTCCCCCGCCCCGTCCCGTGCCACTT
GCTTTTCTCGTTGACAATGGCAATGGAACGCCCCGCTCCTCCCCCGACGA
CCAAACTCCAGCAAACTGGATATGAGGAACTTCAAGAAGCCTACCACCCA
CGACGCGCACAAGAACTCGGAGGCAGAAGAGAAGAGGGCCAGGAACGCCT
CGCCGGTTCGCTCCAACGGGATCTCGGCGGCAACAAAGTAGGAACGGTCC
GGTAAAGGCGGCCCTCCCCTCTCTCTTCCTCGGAATAAGGCGGAGTGTGG
AAGGGGACGGAACGGGAAACTCGCGTGCCTTCTGGTGCTGCTCGCACAAG
GCTGGTAGACGGGAAGGTCAAGGAGAACGGGCACGCCAGGCCTGGCCTGT
GACGCGATGTAGCGTGACATTTGTTTGCATACTCGTGCGTAAAATTCCGT
TGCGGAACAGCAGTGTAGCTCAGCCGTCTGTGTGTGTGTGCCCGCCCCGC
CTTGTCTTGACCCTTGTTTCCTCGGGGATGGTGTACCCCCCCGTAGCTGC
GTGTTGGTTGTGCGCGGCCGCGGTTTCGGAAAGAAAGGGGTGTTTTGACC
GCGGTTTCGTGAAAGGATGCAAGGTCTGGTGTTTGTCAAGGTGGGACCGG
TTCCGAAGGGGGCAAATTTCTGTAGCCATAGGCTTGATGCTTTCTGTTTT
TGTTGTTCGGAATGTTCCGCACTAACGTGGTTGGCGGTGGAGTTGGTCTT
GCTCCGAGAAGTTTGTCAAAAATCGTTCGCTTGCGAACGTGAGAAAGCAA
GAGCGCAATGTAAACCGCCTAGACGATTGTTTTCAGTCATGCGGTGAACT
GATACATAACAAAATTTTGTCGTGTTTCTGCCTGAGATGTGTTGCTTTTC
TTTGGTCCAACAAGCTATGGCAGTCCTGCAGAGGATACTCACTCCAGGGC
GTCGGGGTAAATGCCGCCCATACCCATGTATATTGATGGTCGCATAAGAG
GGGCGGTCCTCATGGCATTGTTGAGGCAAGGGTGTCGCCACCAAGCGTGT
GTAGGAAATCGAGAACCCACATGGTTTTGGCGGTTACAACTTGATCTTTG
GGTCAGCTGCACTCGCTCTCTCTCGCAGCTTCTGCTTCCCTTGTAACACT
AGGAACGGTTTGATTTCTTTGAACCCTTTACCGGG
back to top

Coding sequence (CDS) from alignment at Ecto-sp6_S_contig100:333694..342328-

>mRNA_Ecto-sp6_S_contig100.730.1 ID=mRNA_Ecto-sp6_S_contig100.730.1|Name=mRNA_Ecto-sp6_S_contig100.730.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1113bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:333694..342328- (Ectocarpus species6 EcLAC_371)
ATGGCGGCAATGGGTAAGACTGAGAATGAATTCGCCTCGAAGCTCCACGC
GGCGCAGGCCAGACCCTTCCTGAGGGTTCTGGTTACTGGTGGGGCCGGTT
TCCTCGGGTCCCATCTCTGCCGAAGGTTGCTGGACGAAGGTCACCAGGTC
ATCTGCCTCGACAACTTCTTCACCAGTCAGAAGCTTAACATCCAGGACCT
GTTCGACCGGCCCAACTTTGAGTTCGTCCGTCACGACATCACGGAGCCGT
TCCGGGCGGAGGTGGACCAGATCTACAACATGGCGTGCCCGGCGTCTCCG
GTGCACTACCAGTACAACCCCATCAAGACCACCAAGGTTTCCTTTTTCGG
AGCGATGAACATGCTGGGGCTGGCGAAGCGAGTAAACGCCCGCATCCTCC
AGGCGTCCACTAGCGAGGTGTATGGGGATGCGCAAGAGAGTCCGCAGACG
GAGTCGTACTGGGGTAACGTCAACTGTCACGGCGTGCGAGCTTGCTACGA
CGAGGGCAAGCGGGTAGCCGAGACCCTCTTCTTCGACTTCCACAGGCAGC
ACAAGATCGAAGTACGCGTCGCTCGTATCTTCAACACGTTCGGCCCAGGG
ATGCACCCGTACGACGGGCGGGTGGTGAGCAACTTCATCATGCAGGCTCT
CAGCGGGGAGGACATCACCATCTACGGGGACGGCGGCCAGACTCGCTCGT
TCTGCTTCGTGGACGACCTGATCGAGGGGCTCGTGAGGCTCATGAACAAC
GACACGGAGATCGGGCCCATGAACATCGGCAACCCGACAGAGTTCACGAT
CAAGCAGCTAGCGGAGATGACCGTCCGCCTCACCAAGTCTCCCAGCAAGA
TCATCTACAAGCCGCTGCCGCAGGACGACCCGAAGCAGCGCCGGCCTGAC
ATCAGCTTCGCGAAGAGCGCGTTGGATTGGGAGCCAAACGTGGCCCTCGA
GGAGGGCCTGGCCAAAACCATCGAATACTTCAGCAAACTGGATATGAGGA
ACTTCAAGAAGCCTACCACCCACGACGCGCACAAGAACTCGGAGGCAGAA
GAGAAGAGGGCCAGGAACGCCTCGCCGGTTCGCTCCAACGGGATCTCGGC
GGCAACAAAGTAG
back to top