mRNA_Ecto-sp6_S_contig10.551.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig10.551.1
Unique NamemRNA_Ecto-sp6_S_contig10.551.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig10.551.1 vs. uniprot
Match: D7FN78_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN78_ECTSI)

HSP 1 Score: 102 bits (255), Expect = 2.900e-23
Identity = 52/54 (96.30%), Postives = 54/54 (100.00%), Query Frame = 1 
Query:  172 RAASPVLSFEELARILAEEWDSMPEEAKTPYRQRADEEHLRHETMSAALALTQV 333
            RAASPV+SFEELARILAEEWDSMPEEAKTPYRQRADEEHLRHETMSAALALTQ+
Sbjct:   25 RAASPVVSFEELARILAEEWDSMPEEAKTPYRQRADEEHLRHETMSAALALTQI 78
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BLAST of mRNA_Ecto-sp6_S_contig10.551.1 vs. uniprot
Match: A0A443SGA6_9ACAR (TOX high mobility group box family member 4-like isoform X7 n=1 Tax=Leptotrombidium deliense TaxID=299467 RepID=A0A443SGA6_9ACAR)

HSP 1 Score: 50.4 bits (119), Expect = 8.870e-5
Identity = 27/72 (37.50%), Postives = 48/72 (66.67%), Query Frame = 1 
Query:  112 DKHQGPLSPFA-LFSEEKAQLRAASPVLSFEELARILAEEWDSMPEEAKTPYRQRADEEHLRHETMSAALAL 324
            +K   P+S +A  F E++ ++++ +P  SF E+++I+A EWDS+P E K  Y+++AD+E  +HE + A   L
Sbjct:   80 NKPPKPVSAYAHFFREKQTEIKSKNPDASFGEVSKIVASEWDSLPNETKVIYKKKADQE--KHEYLRALATL 149
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig10.551.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FN78_ECTSI2.900e-2396.30Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A443SGA6_9ACAR8.870e-537.50TOX high mobility group box family member 4-like i... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig10contigEcto-sp6_S_contig10:1368468..1370682 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score104.0
Seed ortholog evalue5.1e-20
Seed eggNOG ortholog2880.D7FN78
Model size366
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.high mobility group
EggNOG OGs2EXFV@1,2SZ4V@2759
Ec32 ortholog descriptionHigh mobility group domain protein
Ec32 orthologEc-15_003265.1
Cds size366
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348707.4592533-CDS-Ecto-sp6_S_contig10:1368467..13685511682348707.4592533-CDS-Ecto-sp6_S_contig10:1368467..1368551Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 1368468..1368551 +
1682348707.468104-CDS-Ecto-sp6_S_contig10:1369685..13697741682348707.468104-CDS-Ecto-sp6_S_contig10:1369685..1369774Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 1369686..1369774 +
1682348707.4753141-CDS-Ecto-sp6_S_contig10:1370489..13706821682348707.4753141-CDS-Ecto-sp6_S_contig10:1370489..1370682Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 1370490..1370682 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig10.551.1prot_Ecto-sp6_S_contig10.551.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig10 1368468..1370682 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig10.551.1

>prot_Ecto-sp6_S_contig10.551.1 ID=prot_Ecto-sp6_S_contig10.551.1|Name=mRNA_Ecto-sp6_S_contig10.551.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=122bp
MGTNAENAGGDSRSGWTQAFSPRATLHPTTPLRGAVGDKHQGPLSPFALF
SEEKAQLRAASPVLSFEELARILAEEWDSMPEEAKTPYRQRADEEHLRHE
TMSAALALTQVTFVDEKLLLN*
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mRNA from alignment at Ecto-sp6_S_contig10:1368468..1370682+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig10.551.1 ID=mRNA_Ecto-sp6_S_contig10.551.1|Name=mRNA_Ecto-sp6_S_contig10.551.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=2215bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:1368468..1370682+ (Ectocarpus species6 EcLAC_371)
ATGGGCACCAATGCCGAGAACGCTGGAGGCGACTCAAGGTCTGGTTGGAC
CCAAGCTTTTTCTCCCAGGGCCACCCTCCACCCGGTGCGCAAACCTGCTG
TTCTTGTTGGAGGGAATGTATGCCTTGTGAATTGGCCAATTTCGAACCGC
AGCTGGTTGTTGTATCTCAGAGAGGAACACGGGTACATAATTGCGCAAGT
GAAGTGATGCCTTTCGGCAGTCCAAGGAGCCACACACCTATATGGGTTGG
TATTGCAATTGACCGTCCCAATTCGTCGCGTCCGATTGCGTTCATGGCCA
GCCGTACCGTAGGAGGTTGCATAAGATATCACACCCCCTGGCCCGATGTT
CGAAGCTCGATTACTTGACAAGAACATTAATGTACGTAAGTGACTGTGCC
GAGAATGGCGGCGTTGGAACGGCATCGTCGAGAGCTGTCCGGACGAATCC
TTTGATTCCAGCATCTTCTTCGTCGTGGAGTACTGTAGTGAAGCTTTGAA
AATCGTCCCAGGGGGTGTGGTATCTGATGCAACCTACGGTAGGCAGTGAA
GGTACTGCCAGCAGTAGAGCAACTCCATCCGGCCACCCAGGATTCACCAT
TGCATAGCCCGCGAACGGCGAGTCCATAGGTGGATCGATCCAATCATGCC
GACAAAAATTCGAAGCCTGCGTGTGATACCACCCACCAGCTCGTGCTGAA
GTCTATCAACCCTCCAGATTTCACTCAATCGACGCCGTCTACTGCTGTGT
ATCTCTCATGGGTCATCTCCCATCGGATCCCTGCCCCCCACAGCCCCGCG
GGATTCATGGTGTTACTAGCCCTAGAGGGCGGTGATGTCTTTTGCCCGGA
GCCCCCCTAACTCCTTCTTGTGTGCACCTCCTCAGAGTCGTGCCACCCTT
AGGCGGTTAGCCGGGTCATTCCTCCGTAAGAGCACTCCGTAAGAGCACAA
CAATTGCAAAATTCAAAATTTTGTCCATCGATTGTTCCCAGGGCGTGAGG
TATACCTCACATATCTGTTCCATGTGACTATAATCTAACGTAGTGAAGGC
CGTGTTGATAGTGGATTGCGTCAAGGGGTTTCTCGGCCTTATGAACAGCA
GCGATTCTTCTCGTGAATTGTTCAACTATCGTCGGTCCATTCACCCGGCT
ATCCCAGACATCACAACAACACCACCGCCCCCCGCACGGCCTCTCTGTTC
GCTATTCTTTTCACTCAGACCACACCGCTGAGGGGTGCTGTTGGAGACAA
GCATCAAGGTCCTCTATCCCCCTTCGCGCTGTTTTCGGAGGAAAAGGCCC
AACTCAGGTGCACAACACCTCGTAGGGCTTTCACCCACACACATGTATTT
TGGACATATTCACCCCCTTCCTATCGACGCCAAATTGCCGCACAACCAAC
AGGTGCGGTGCTTGCAGTAGTAGTTCAGCGATACCGATGAAGGTGCTGTT
TCTGCCATGTACTACTGGCGGCAGCTGCTGCTGCTTAAAAATGTATCCTA
CCCTTGGGTGAGAAATGCAGCCAAAATTAAATCATCTGCCAGTGGTGTGT
GGTGTGAATTTCGAGCGCCGCCCGCCGGCTCGGAACTTCGAGCGCCGCCC
GCCGGCTCGGAGCTTCTTTGTTATTTCACTCCGAGTCCGAGTGGCAGCGT
TTGCGCGTTTGTGGTGTTGGTGAAAAATCGGTGAGAAGGAGAACTTGATC
ACATATAATGTGAATACTGCTACAACCAACTACCGATATGGAACGCTGGG
GGCATCACAGCATAGCTATCTGCGTGCCGCTAAGCTATATGCGAGTTAAA
GCCTTCACGATTCAGGCCTTCCGTTCCCTAGCAGTTACATCGCACCATTC
CCAAACGATCGACCATTGCAATTCCTATCTCAGCAAGCCGTTCTTCACTC
TTTTCAACTCCTACTGTTGGGATTTTTTGCGCTTCCATTCGGCTGGACTT
CTCTCGCTCTCCAACACGACGCCGTGGGATGATGGCACAACAAACCAAAA
CTAAACTTTGATGGCTATATAGAGCGGCGTCACCAGTTTTATCGTTCGAA
GAGCTAGCCAGGATCTTGGCGGAGGAGTGGGACAGCATGCCCGAGGAGGC
CAAGACCCCGTACCGACAGAGGGCTGACGAAGAACACCTTCGACACGAGA
CCATGAGCGCTGCACTAGCCCTTACACAGGTCACCTTCGTTGATGAAAAG
CTGCTGTTAAACTGA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig10:1368468..1370682+

>mRNA_Ecto-sp6_S_contig10.551.1 ID=mRNA_Ecto-sp6_S_contig10.551.1|Name=mRNA_Ecto-sp6_S_contig10.551.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=366bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:1368468..1370682+ (Ectocarpus species6 EcLAC_371)
ATGGGCACCAATGCCGAGAACGCTGGAGGCGACTCAAGGTCTGGTTGGAC
CCAAGCTTTTTCTCCCAGGGCCACCCTCCACCCGACCACACCGCTGAGGG
GTGCTGTTGGAGACAAGCATCAAGGTCCTCTATCCCCCTTCGCGCTGTTT
TCGGAGGAAAAGGCCCAACTCAGAGCGGCGTCACCAGTTTTATCGTTCGA
AGAGCTAGCCAGGATCTTGGCGGAGGAGTGGGACAGCATGCCCGAGGAGG
CCAAGACCCCGTACCGACAGAGGGCTGACGAAGAACACCTTCGACACGAG
ACCATGAGCGCTGCACTAGCCCTTACACAGGTCACCTTCGTTGATGAAAA
GCTGCTGTTAAACTGA
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