prot_Ecto-sp6_S_contig10.551.1 (polypeptide) Ectocarpus species6 EcLAC_371

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp6_S_contig10.551.1
Unique Nameprot_Ecto-sp6_S_contig10.551.1
Typepolypeptide
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Sequence length122
Homology
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BLAST of mRNA_Ecto-sp6_S_contig10.551.1 vs. uniprot
Match: D7FN78_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN78_ECTSI)

HSP 1 Score: 102 bits (255), Expect = 2.900e-23
Identity = 52/54 (96.30%), Postives = 54/54 (100.00%), Query Frame = 0 
Query:   58 RAASPVLSFEELARILAEEWDSMPEEAKTPYRQRADEEHLRHETMSAALALTQV 111
            RAASPV+SFEELARILAEEWDSMPEEAKTPYRQRADEEHLRHETMSAALALTQ+
Sbjct:   25 RAASPVVSFEELARILAEEWDSMPEEAKTPYRQRADEEHLRHETMSAALALTQI 78
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BLAST of mRNA_Ecto-sp6_S_contig10.551.1 vs. uniprot
Match: A0A443SGA6_9ACAR (TOX high mobility group box family member 4-like isoform X7 n=1 Tax=Leptotrombidium deliense TaxID=299467 RepID=A0A443SGA6_9ACAR)

HSP 1 Score: 50.4 bits (119), Expect = 8.870e-5
Identity = 27/72 (37.50%), Postives = 48/72 (66.67%), Query Frame = 0 
Query:   38 DKHQGPLSPFA-LFSEEKAQLRAASPVLSFEELARILAEEWDSMPEEAKTPYRQRADEEHLRHETMSAALAL 108
            +K   P+S +A  F E++ ++++ +P  SF E+++I+A EWDS+P E K  Y+++AD+E  +HE + A   L
Sbjct:   80 NKPPKPVSAYAHFFREKQTEIKSKNPDASFGEVSKIVASEWDSLPNETKVIYKKKADQE--KHEYLRALATL 149
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig10.551.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FN78_ECTSI2.900e-2396.30Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A443SGA6_9ACAR8.870e-537.50TOX high mobility group box family member 4-like i... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009071High mobility group box domainSMARTSM00398hmgende2coord: 39..108
e-value: 6.4E-8
score: 42.3
IPR009071High mobility group box domainPFAMPF00505HMG_boxcoord: 43..102
e-value: 9.4E-12
score: 45.2
IPR009071High mobility group box domainPROSITEPS50118HMG_BOX_2coord: 40..107
score: 11.571
IPR036910High mobility group box domain superfamilyGENE3D1.10.30.10coord: 36..115
e-value: 4.6E-14
score: 54.4
IPR036910High mobility group box domain superfamilySUPERFAMILY47095HMG-boxcoord: 38..102
NoneNo IPR availablePANTHERPTHR13711SWI/SNF-RELATED CHROMATIN BINDING PROTEINcoord: 43..102
NoneNo IPR availablePANTHERPTHR13711:SF302HIGH MOBILITY GROUP PROTEIN DSP1-RELATEDcoord: 43..102

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig10contigEcto-sp6_S_contig10:1368468..1370682 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig10.551.1mRNA_Ecto-sp6_S_contig10.551.1Ectocarpus species6 EcLAC_371mRNAEcto-sp6_S_contig10 1368468..1370682 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp6_S_contig10.551.1 ID=prot_Ecto-sp6_S_contig10.551.1|Name=mRNA_Ecto-sp6_S_contig10.551.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=122bp
MGTNAENAGGDSRSGWTQAFSPRATLHPTTPLRGAVGDKHQGPLSPFALF
SEEKAQLRAASPVLSFEELARILAEEWDSMPEEAKTPYRQRADEEHLRHE
TMSAALALTQVTFVDEKLLLN*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009071HMG_box_dom
IPR036910HMG_box_dom_sf