mRNA_Ecto-sp6_S_contig10.500.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig10.500.1
Unique NamemRNA_Ecto-sp6_S_contig10.500.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig10.500.1 vs. uniprot
Match: D8LSS0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSS0_ECTSI)

HSP 1 Score: 395 bits (1014), Expect = 1.410e-134
Identity = 201/204 (98.53%), Postives = 201/204 (98.53%), Query Frame = 2 
Query:   92 MIQAGAGAAALERGEEGSLIAGTERRRKGWVVPALAAAVGVALLLACGLSAH-AREDASAAGAAATPMQASTDSVPSCSLLSCTSSGCDWDGAPFLCLDGGSAGGCADSASTWSGGDGCTSFCDLSGCADTLENTGVDDLPRRCLECDETQCSNLAGHPSQACGSTVPFVCLSGAATWGCADNELAWASAPSTTCGECCDVSGC 700
            MIQAGAGAAALERGEEGSLIAGTE RRKGWVVPALAAAVGVALLLACGLSAH AREDASAAGAAATPMQASTDSVPSCSLLSCTSSGCDWDGAPFLCLDGGSAGGCADSASTWSGGDGCTSFCDLSGCADTLENTGVDDLPRRCLECDETQCSNLAGHPSQACGSTVPFVCLSGAATWGCADNELAWAS PSTTCGECCDVSGC
Sbjct:    1 MIQAGAGAAALERGEEGSLIAGTEPRRKGWVVPALAAAVGVALLLACGLSAHHAREDASAAGAAATPMQASTDSVPSCSLLSCTSSGCDWDGAPFLCLDGGSAGGCADSASTWSGGDGCTSFCDLSGCADTLENTGVDDLPRRCLECDETQCSNLAGHPSQACGSTVPFVCLSGAATWGCADNELAWASTPSTTCGECCDVSGC 204
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig10.500.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LSS0_ECTSI1.410e-13498.53Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig10contigEcto-sp6_S_contig10:837602..840640 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score397.9
Seed ortholog evalue3e-108
Seed eggNOG ortholog2880.D8LSS0
Model size1394
Hectar predicted targeting categorysignal anchor
Exons5
EggNOG OGs2E594@1,2SC37@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-15_002830.1
Cds size636
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348703.304428-UTR-Ecto-sp6_S_contig10:837601..8376521682348703.304428-UTR-Ecto-sp6_S_contig10:837601..837652Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig10 837602..837652 +
1682348703.3130562-UTR-Ecto-sp6_S_contig10:837796..8378121682348703.3130562-UTR-Ecto-sp6_S_contig10:837796..837812Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig10 837797..837812 +
1682348703.3518505-UTR-Ecto-sp6_S_contig10:839949..8406401682348703.3518505-UTR-Ecto-sp6_S_contig10:839949..840640Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig10 839950..840640 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348703.3204072-CDS-Ecto-sp6_S_contig10:837812..8380111682348703.3204072-CDS-Ecto-sp6_S_contig10:837812..838011Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 837813..838011 +
1682348703.3277328-CDS-Ecto-sp6_S_contig10:838634..8387701682348703.3277328-CDS-Ecto-sp6_S_contig10:838634..838770Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 838635..838770 +
1682348703.3358042-CDS-Ecto-sp6_S_contig10:839237..8394491682348703.3358042-CDS-Ecto-sp6_S_contig10:839237..839449Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 839238..839449 +
1682348703.3443184-CDS-Ecto-sp6_S_contig10:839860..8399491682348703.3443184-CDS-Ecto-sp6_S_contig10:839860..839949Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 839861..839949 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig10.500.1prot_Ecto-sp6_S_contig10.500.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig10 837813..839949 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig10.500.1

>prot_Ecto-sp6_S_contig10.500.1 ID=prot_Ecto-sp6_S_contig10.500.1|Name=mRNA_Ecto-sp6_S_contig10.500.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=212bp
MTNKQSYEMIQAGAGAAALERGEEGSLIAGTERRRKGWVVPALAAAVGVA
LLLACGLSAHAREDASAAGAAATPMQASTDSVPSCSLLSCTSSGCDWDGA
PFLCLDGGSAGGCADSASTWSGGDGCTSFCDLSGCADTLENTGVDDLPRR
CLECDETQCSNLAGHPSQACGSTVPFVCLSGAATWGCADNELAWASAPST
TCGECCDVSGC*
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mRNA from alignment at Ecto-sp6_S_contig10:837602..840640+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig10.500.1 ID=mRNA_Ecto-sp6_S_contig10.500.1|Name=mRNA_Ecto-sp6_S_contig10.500.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=3039bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:837602..840640+ (Ectocarpus species6 EcLAC_371)
CACGCCTGCCGCGATCTTTGCCGCTTCTCGTATACGATACACCGGCGGCA
GGTAAGACACAACAGCAGGCACGGGCAAATGGTCTAGTAGCCCTTGCCGT
TGGCATGCTGTACTTCGCTGCGAGATCTCCATCGCTGCCCCTCTCGAGCG
GTTTTGTTGAATGTGCTCCGATCGCTGTATGTTTCTTTGCAGCAGGTCAA
ACTCGCTCAGAATGACCAACAAGCAATCGTATGAGATGATCCAGGCGGGT
GCCGGGGCAGCAGCCCTTGAACGGGGGGAGGAAGGGTCGCTGATAGCTGG
CACTGAGCGGCGGCGCAAAGGATGGGTGGTACCGGCGTTGGCGGCGGCGG
TTGGTGTCGCTCTGCTGCTGGCCTGTGGATTGTCTGCTCATGCTCGGGAG
GATGCTTCCGGTGTGTGTCTGTTGGGAAGACATGTGCTGACTGCTGTAGA
TTTACCACTTCCGGAGCACAATGCACAGCAATGCAACAAGCAGCTGTAGC
TAGTTGTTACCGGGTTAACATGCTAAACACACGTGTAAGCCCGATGTGGG
TTCGGAGATGGGAACTTCAACACGTTTGATCGAGGTTGGCCGAATCAAAC
GGCAGCCAAAGCTTCACAAGCAGCGTGCTTGCGGACCTGCCAAGCTGCGA
GTTGTAAGGGTCGTAGATATGTACCGACGTAAAGGTTTTGAATAATAATG
AATCAAACCGCGCAATCCACGTTGCCATGAGCTATGATTGCAGAAATACC
ATTCGCTAATCCTGAGGTTTGCACATCTCGGACCAACTTTGTTCTCGTCA
AGCGACCCAGCCAAAACGGTCGCTCACAGGCATGCGAGTGGTGGTCGAAC
AACTTGATTTTGTTTCTGTTGCTTGCTTGCCCCCCAACAGGTTTGTTCTC
ATCCCATGTGTCCAGTCTGTTTCGTTCCCACACACGCGGAGGGTTTGCCA
TGACAAGAGGCGTTTGCACCTTTGAAAAAATTACTCTTCCAACCGCACCG
CCTCCTCTGTCCGGCAACGACCCCTTCCCGCAGCTGCCGGCGCTGCCGCG
ACCCCCATGCAAGCCTCCACGGACAGCGTCCCTTCCTGCAGCCTCCTTTC
CTGCACGAGCTCGGGCTGCGACTGGGACGGGGCCCCTTTCCTCTGCCTGG
ACGGGGGCTCCGCTGGAGGGTGGGCGCCTTGTACCGTTGTTGCTAAATTG
GTCGTCGTCGTTGTTGACGGTCTGTTATTGTGGTGACTCTTAAGGTCTGA
CCGGATGTTGAACCGTAGCTCAACTCTAATAGACCGTAACACCTCCTGTC
GGTGTTTTAGATCCGTATCAAAGGTGATGAGTGCAAGCTCCCGCCCCGTC
CGTCGGAATTCGGTACATATGATAGGTCGTTGGTATTGGCGTGCGCGCGT
GCCTCACGCGTTCGAAACTTGTCGGCGCATTAATCCTACTTCAGGGTGTA
CGTGTACAGCAACAAGATTGAATGACTGCTGTGAAACAACCAGAAACAAC
CACACATAACGACCACATATCGCGTAAGAGCCATCGTCAAAAACTCACAA
CGAGATTCCTCTTTCGTTTCCCGGCGAGCGCTACACCACCACCATATCTC
ATGATACCTCTCTTCCGCGCGCCCCCTCCTCAACAGGTGCGCAGACAGCG
CCTCTACGTGGTCTGGAGGCGACGGCTGCACGTCCTTCTGCGACCTCTCC
GGCTGCGCCGATACCCTTGAGAACACCGGCGTGGACGACCTGCCGCGGCG
CTGCCTGGAGTGCGACGAAACACAGTGCTCCAACCTGGCCGGGCACCCGT
CGCAGGCGTGCGGCAGCACGGTGCCGTTCGTGTGTCTCTCCGGCGCAGGT
ATTTTCTCGTGTGTCGTGTCGATGGCGCGATGGCTGGTATTTCTTTGCTA
TGACCGTGGATGCAGTACATTGGGCGGGGGGGGTACTCAACAACGCCGGT
GTGAGCCCGGCGAATCGACCGGCGCTACAAATTCAGATTCAGAGGGACCG
GCGCTTTTTCACAATACAGGATGACTTGATGATTCAGTCTGTATCGAGCA
ATTTAACCGGCGCTATTCAGATCCACCGGCGCTATGCAACGCACGTTGCT
GAGGCCCGCCCACTGCAGTCGTAGGTGGTGCTTGGATTCTTGTCGAACAC
TGCCTGTGTGCGTCGCTCTTCTTTCGCGATGGTGAAGCTTTGGTGTTGTT
CTTCGCGTCGTCGCTAATGCCTTTTGTTGATCCTCGGTTTTGCCTGCGTG
CTTGTGCAGCCACCTGGGGCTGCGCGGATAACGAGCTGGCGTGGGCAAGC
GCACCTTCGACAACGTGTGGCGAGTGCTGCGATGTCAGCGGCTGCTAAGT
TAGTAAGGGGCGCGGTGGAAAGGGTCGCGGATTGATTTCCCTTGAAACGG
AGGGCACCCCATTCGCCCGTGGCTAGGTTTAGAGATACATGTTGTTTGTT
TGGTGAGGTACGGGGGGCTCATAGGTGCTGGCAGAGATGGCTATCCGAAA
GGGTTTTATCGTGTTTTGTCGGCGACCAATTTTGTCTTGATGCCCCAGCA
TTTCTATTATCATGATGGGCAGAAGTCAGTCAGTGGTGGGTAGGTTGGGC
ACCGATTGCACCCTGGGGGGGGAGGAGGTTGCACCCCGAAGTGGGCAAGT
AGTCCCGCATCTCGGTGAGTGGCGTTTTTCCAATCGAGTGGGCAAGCAGC
ATAGCCAAGAAAATGGTTCAATGTCGATCCCAGCTTCCCATCCTCCTCAC
CCAACCCTTGGGAGGTCGTGATCGGTGCACAACCTACACCTCTGATCACC
AGTGTAGAGGTGGATTTTGGTCGCAGAGTGGTTGGGACGTGGGAAAGTAG
GCGAGATACTCAAAAGAATCTTGTATTCGTAGCGACGTGGCCTGGCCGCA
ATCCATTCGGCAACTACAACCTCGAGCATGGTAGGACAAGGAGAAGCTAG
TCTACGACACTTCTCGAGGTGGGGAGAGATTCAGCGTACGACGCAGGTGC
AAACTCGGGCTTCACCCCGGTACACCAACACGATTGAGC
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig10:837602..840640+

>mRNA_Ecto-sp6_S_contig10.500.1 ID=mRNA_Ecto-sp6_S_contig10.500.1|Name=mRNA_Ecto-sp6_S_contig10.500.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=636bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:837602..840640+ (Ectocarpus species6 EcLAC_371)
ATGACCAACAAGCAATCGTATGAGATGATCCAGGCGGGTGCCGGGGCAGC
AGCCCTTGAACGGGGGGAGGAAGGGTCGCTGATAGCTGGCACTGAGCGGC
GGCGCAAAGGATGGGTGGTACCGGCGTTGGCGGCGGCGGTTGGTGTCGCT
CTGCTGCTGGCCTGTGGATTGTCTGCTCATGCTCGGGAGGATGCTTCCGC
TGCCGGCGCTGCCGCGACCCCCATGCAAGCCTCCACGGACAGCGTCCCTT
CCTGCAGCCTCCTTTCCTGCACGAGCTCGGGCTGCGACTGGGACGGGGCC
CCTTTCCTCTGCCTGGACGGGGGCTCCGCTGGAGGGTGCGCAGACAGCGC
CTCTACGTGGTCTGGAGGCGACGGCTGCACGTCCTTCTGCGACCTCTCCG
GCTGCGCCGATACCCTTGAGAACACCGGCGTGGACGACCTGCCGCGGCGC
TGCCTGGAGTGCGACGAAACACAGTGCTCCAACCTGGCCGGGCACCCGTC
GCAGGCGTGCGGCAGCACGGTGCCGTTCGTGTGTCTCTCCGGCGCAGCCA
CCTGGGGCTGCGCGGATAACGAGCTGGCGTGGGCAAGCGCACCTTCGACA
ACGTGTGGCGAGTGCTGCGATGTCAGCGGCTGCTAA
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