prot_Ecto-sp6_S_contig10.500.1 (polypeptide) Ectocarpus species6 EcLAC_371

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp6_S_contig10.500.1
Unique Name	prot_Ecto-sp6_S_contig10.500.1
Type	polypeptide
Organism	Ectocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Sequence length	212

Homology

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BLAST of mRNA_Ecto-sp6_S_contig10.500.1 vs. uniprot
Match: D8LSS0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSS0_ECTSI)

HSP 1 Score: 395 bits (1016), Expect = 5.420e-139
Identity = 201/204 (98.53%), Postives = 201/204 (98.53%), Query Frame = 0

Query:    9 MIQAGAGAAALERGEEGSLIAGTERRRKGWVVPALAAAVGVALLLACGLSAH-AREDASAAGAAATPMQASTDSVPSCSLLSCTSSGCDWDGAPFLCLDGGSAGGCADSASTWSGGDGCTSFCDLSGCADTLENTGVDDLPRRCLECDETQCSNLAGHPSQACGSTVPFVCLSGAATWGCADNELAWASAPSTTCGECCDVSGC 211
            MIQAGAGAAALERGEEGSLIAGTE RRKGWVVPALAAAVGVALLLACGLSAH AREDASAAGAAATPMQASTDSVPSCSLLSCTSSGCDWDGAPFLCLDGGSAGGCADSASTWSGGDGCTSFCDLSGCADTLENTGVDDLPRRCLECDETQCSNLAGHPSQACGSTVPFVCLSGAATWGCADNELAWAS PSTTCGECCDVSGC
Sbjct:    1 MIQAGAGAAALERGEEGSLIAGTEPRRKGWVVPALAAAVGVALLLACGLSAHHAREDASAAGAAATPMQASTDSVPSCSLLSCTSSGCDWDGAPFLCLDGGSAGGCADSASTWSGGDGCTSFCDLSGCADTLENTGVDDLPRRCLECDETQCSNLAGHPSQACGSTVPFVCLSGAATWGCADNELAWASTPSTTCGECCDVSGC 204

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp6_S_contig10.500.1 vs. uniprot

BLAST of mRNA_Ecto-sp6_S_contig10.500.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
D8LSS0_ECTSI	5.420e-139	98.53	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 60..211
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..37
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 38..59
None	No IPR available	TMHMM	TMhelix		coord: 38..60

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp6_S_contig10	contig	Ecto-sp6_S_contig10:837813..839949 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species6 EcLAC_371 OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp6_S_contig10.500.1	mRNA_Ecto-sp6_S_contig10.500.1	Ectocarpus species6 EcLAC_371	mRNA	Ecto-sp6_S_contig10 837602..840640 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp6_S_contig10.500.1 ID=prot_Ecto-sp6_S_contig10.500.1|Name=mRNA_Ecto-sp6_S_contig10.500.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=212bp
MTNKQSYEMIQAGAGAAALERGEEGSLIAGTERRRKGWVVPALAAAVGVA
LLLACGLSAHAREDASAAGAAATPMQASTDSVPSCSLLSCTSSGCDWDGA
PFLCLDGGSAGGCADSASTWSGGDGCTSFCDLSGCADTLENTGVDDLPRR
CLECDETQCSNLAGHPSQACGSTVPFVCLSGAATWGCADNELAWASAPST
TCGECCDVSGC*