Homology
BLAST of mRNA_Ecto-sp6_S_contig10.500.1 vs. uniprot
Match: D8LSS0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSS0_ECTSI) HSP 1 Score: 395 bits (1014), Expect = 1.410e-134 Identity = 201/204 (98.53%), Postives = 201/204 (98.53%), Query Frame = 2 Query: 92 MIQAGAGAAALERGEEGSLIAGTERRRKGWVVPALAAAVGVALLLACGLSAH-AREDASAAGAAATPMQASTDSVPSCSLLSCTSSGCDWDGAPFLCLDGGSAGGCADSASTWSGGDGCTSFCDLSGCADTLENTGVDDLPRRCLECDETQCSNLAGHPSQACGSTVPFVCLSGAATWGCADNELAWASAPSTTCGECCDVSGC 700
MIQAGAGAAALERGEEGSLIAGTE RRKGWVVPALAAAVGVALLLACGLSAH AREDASAAGAAATPMQASTDSVPSCSLLSCTSSGCDWDGAPFLCLDGGSAGGCADSASTWSGGDGCTSFCDLSGCADTLENTGVDDLPRRCLECDETQCSNLAGHPSQACGSTVPFVCLSGAATWGCADNELAWAS PSTTCGECCDVSGC
Sbjct: 1 MIQAGAGAAALERGEEGSLIAGTEPRRKGWVVPALAAAVGVALLLACGLSAHHAREDASAAGAAATPMQASTDSVPSCSLLSCTSSGCDWDGAPFLCLDGGSAGGCADSASTWSGGDGCTSFCDLSGCADTLENTGVDDLPRRCLECDETQCSNLAGHPSQACGSTVPFVCLSGAATWGCADNELAWASTPSTTCGECCDVSGC 204
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig10.500.1 vs. uniprot
Analysis Date: 2022-09-19 ( Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match Name | E-value | Identity | Description | |
D8LSS0_ECTSI | 1.410e-134 | 98.53 | Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... | [more] |
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Taxonomic scope | Eukaryota |
Stop | 1 |
Start | 1 |
Seed ortholog score | 397.9 |
Seed ortholog evalue | 3e-108 |
Seed eggNOG ortholog | 2880.D8LSS0 |
Model size | 1394 |
Hectar predicted targeting category | signal anchor |
Exons | 5 |
EggNOG OGs | 2E594@1,2SC37@2759 |
Ec32 ortholog description | conserved unknown protein |
Ec32 ortholog | Ec-15_002830.1 |
Cds size | 636 |
Best tax level | Eukaryota |
Best eggNOG OG | NA|NA|NA |
Relationships
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1682348703.304428-UTR-Ecto-sp6_S_contig10:837601..837652 | 1682348703.304428-UTR-Ecto-sp6_S_contig10:837601..837652 | Ectocarpus species6 EcLAC_371 | UTR | Ecto-sp6_S_contig10 837602..837652 + |
1682348703.3130562-UTR-Ecto-sp6_S_contig10:837796..837812 | 1682348703.3130562-UTR-Ecto-sp6_S_contig10:837796..837812 | Ectocarpus species6 EcLAC_371 | UTR | Ecto-sp6_S_contig10 837797..837812 + |
1682348703.3518505-UTR-Ecto-sp6_S_contig10:839949..840640 | 1682348703.3518505-UTR-Ecto-sp6_S_contig10:839949..840640 | Ectocarpus species6 EcLAC_371 | UTR | Ecto-sp6_S_contig10 839950..840640 + |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1682348703.3204072-CDS-Ecto-sp6_S_contig10:837812..838011 | 1682348703.3204072-CDS-Ecto-sp6_S_contig10:837812..838011 | Ectocarpus species6 EcLAC_371 | CDS | Ecto-sp6_S_contig10 837813..838011 + |
1682348703.3277328-CDS-Ecto-sp6_S_contig10:838634..838770 | 1682348703.3277328-CDS-Ecto-sp6_S_contig10:838634..838770 | Ectocarpus species6 EcLAC_371 | CDS | Ecto-sp6_S_contig10 838635..838770 + |
1682348703.3358042-CDS-Ecto-sp6_S_contig10:839237..839449 | 1682348703.3358042-CDS-Ecto-sp6_S_contig10:839237..839449 | Ectocarpus species6 EcLAC_371 | CDS | Ecto-sp6_S_contig10 839238..839449 + |
1682348703.3443184-CDS-Ecto-sp6_S_contig10:839860..839949 | 1682348703.3443184-CDS-Ecto-sp6_S_contig10:839860..839949 | Ectocarpus species6 EcLAC_371 | CDS | Ecto-sp6_S_contig10 839861..839949 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig10.500.1 >prot_Ecto-sp6_S_contig10.500.1 ID=prot_Ecto-sp6_S_contig10.500.1|Name=mRNA_Ecto-sp6_S_contig10.500.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=212bp
MTNKQSYEMIQAGAGAAALERGEEGSLIAGTERRRKGWVVPALAAAVGVA LLLACGLSAHAREDASAAGAAATPMQASTDSVPSCSLLSCTSSGCDWDGA PFLCLDGGSAGGCADSASTWSGGDGCTSFCDLSGCADTLENTGVDDLPRR CLECDETQCSNLAGHPSQACGSTVPFVCLSGAATWGCADNELAWASAPST TCGECCDVSGC* back to topmRNA from alignment at Ecto-sp6_S_contig10:837602..840640+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp6_S_contig10.500.1 ID=mRNA_Ecto-sp6_S_contig10.500.1|Name=mRNA_Ecto-sp6_S_contig10.500.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=3039bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:837602..840640+ (Ectocarpus species6 EcLAC_371) CACGCCTGCCGCGATCTTTGCCGCTTCTCGTATACGATACACCGGCGGCA
GGTAAGACACAACAGCAGGCACGGGCAAATGGTCTAGTAGCCCTTGCCGT
TGGCATGCTGTACTTCGCTGCGAGATCTCCATCGCTGCCCCTCTCGAGCG
GTTTTGTTGAATGTGCTCCGATCGCTGTATGTTTCTTTGCAGCAGGTCAA
ACTCGCTCAGAATGACCAACAAGCAATCGTATGAGATGATCCAGGCGGGT
GCCGGGGCAGCAGCCCTTGAACGGGGGGAGGAAGGGTCGCTGATAGCTGG
CACTGAGCGGCGGCGCAAAGGATGGGTGGTACCGGCGTTGGCGGCGGCGG
TTGGTGTCGCTCTGCTGCTGGCCTGTGGATTGTCTGCTCATGCTCGGGAG
GATGCTTCCGGTGTGTGTCTGTTGGGAAGACATGTGCTGACTGCTGTAGA
TTTACCACTTCCGGAGCACAATGCACAGCAATGCAACAAGCAGCTGTAGC
TAGTTGTTACCGGGTTAACATGCTAAACACACGTGTAAGCCCGATGTGGG
TTCGGAGATGGGAACTTCAACACGTTTGATCGAGGTTGGCCGAATCAAAC
GGCAGCCAAAGCTTCACAAGCAGCGTGCTTGCGGACCTGCCAAGCTGCGA
GTTGTAAGGGTCGTAGATATGTACCGACGTAAAGGTTTTGAATAATAATG
AATCAAACCGCGCAATCCACGTTGCCATGAGCTATGATTGCAGAAATACC
ATTCGCTAATCCTGAGGTTTGCACATCTCGGACCAACTTTGTTCTCGTCA
AGCGACCCAGCCAAAACGGTCGCTCACAGGCATGCGAGTGGTGGTCGAAC
AACTTGATTTTGTTTCTGTTGCTTGCTTGCCCCCCAACAGGTTTGTTCTC
ATCCCATGTGTCCAGTCTGTTTCGTTCCCACACACGCGGAGGGTTTGCCA
TGACAAGAGGCGTTTGCACCTTTGAAAAAATTACTCTTCCAACCGCACCG
CCTCCTCTGTCCGGCAACGACCCCTTCCCGCAGCTGCCGGCGCTGCCGCG
ACCCCCATGCAAGCCTCCACGGACAGCGTCCCTTCCTGCAGCCTCCTTTC
CTGCACGAGCTCGGGCTGCGACTGGGACGGGGCCCCTTTCCTCTGCCTGG
ACGGGGGCTCCGCTGGAGGGTGGGCGCCTTGTACCGTTGTTGCTAAATTG
GTCGTCGTCGTTGTTGACGGTCTGTTATTGTGGTGACTCTTAAGGTCTGA
CCGGATGTTGAACCGTAGCTCAACTCTAATAGACCGTAACACCTCCTGTC
GGTGTTTTAGATCCGTATCAAAGGTGATGAGTGCAAGCTCCCGCCCCGTC
CGTCGGAATTCGGTACATATGATAGGTCGTTGGTATTGGCGTGCGCGCGT
GCCTCACGCGTTCGAAACTTGTCGGCGCATTAATCCTACTTCAGGGTGTA
CGTGTACAGCAACAAGATTGAATGACTGCTGTGAAACAACCAGAAACAAC
CACACATAACGACCACATATCGCGTAAGAGCCATCGTCAAAAACTCACAA
CGAGATTCCTCTTTCGTTTCCCGGCGAGCGCTACACCACCACCATATCTC
ATGATACCTCTCTTCCGCGCGCCCCCTCCTCAACAGGTGCGCAGACAGCG
CCTCTACGTGGTCTGGAGGCGACGGCTGCACGTCCTTCTGCGACCTCTCC
GGCTGCGCCGATACCCTTGAGAACACCGGCGTGGACGACCTGCCGCGGCG
CTGCCTGGAGTGCGACGAAACACAGTGCTCCAACCTGGCCGGGCACCCGT
CGCAGGCGTGCGGCAGCACGGTGCCGTTCGTGTGTCTCTCCGGCGCAGGT
ATTTTCTCGTGTGTCGTGTCGATGGCGCGATGGCTGGTATTTCTTTGCTA
TGACCGTGGATGCAGTACATTGGGCGGGGGGGGTACTCAACAACGCCGGT
GTGAGCCCGGCGAATCGACCGGCGCTACAAATTCAGATTCAGAGGGACCG
GCGCTTTTTCACAATACAGGATGACTTGATGATTCAGTCTGTATCGAGCA
ATTTAACCGGCGCTATTCAGATCCACCGGCGCTATGCAACGCACGTTGCT
GAGGCCCGCCCACTGCAGTCGTAGGTGGTGCTTGGATTCTTGTCGAACAC
TGCCTGTGTGCGTCGCTCTTCTTTCGCGATGGTGAAGCTTTGGTGTTGTT
CTTCGCGTCGTCGCTAATGCCTTTTGTTGATCCTCGGTTTTGCCTGCGTG
CTTGTGCAGCCACCTGGGGCTGCGCGGATAACGAGCTGGCGTGGGCAAGC
GCACCTTCGACAACGTGTGGCGAGTGCTGCGATGTCAGCGGCTGCTAAGT
TAGTAAGGGGCGCGGTGGAAAGGGTCGCGGATTGATTTCCCTTGAAACGG
AGGGCACCCCATTCGCCCGTGGCTAGGTTTAGAGATACATGTTGTTTGTT
TGGTGAGGTACGGGGGGCTCATAGGTGCTGGCAGAGATGGCTATCCGAAA
GGGTTTTATCGTGTTTTGTCGGCGACCAATTTTGTCTTGATGCCCCAGCA
TTTCTATTATCATGATGGGCAGAAGTCAGTCAGTGGTGGGTAGGTTGGGC
ACCGATTGCACCCTGGGGGGGGAGGAGGTTGCACCCCGAAGTGGGCAAGT
AGTCCCGCATCTCGGTGAGTGGCGTTTTTCCAATCGAGTGGGCAAGCAGC
ATAGCCAAGAAAATGGTTCAATGTCGATCCCAGCTTCCCATCCTCCTCAC
CCAACCCTTGGGAGGTCGTGATCGGTGCACAACCTACACCTCTGATCACC
AGTGTAGAGGTGGATTTTGGTCGCAGAGTGGTTGGGACGTGGGAAAGTAG
GCGAGATACTCAAAAGAATCTTGTATTCGTAGCGACGTGGCCTGGCCGCA
ATCCATTCGGCAACTACAACCTCGAGCATGGTAGGACAAGGAGAAGCTAG
TCTACGACACTTCTCGAGGTGGGGAGAGATTCAGCGTACGACGCAGGTGC
AAACTCGGGCTTCACCCCGGTACACCAACACGATTGAGC back to topCoding sequence (CDS) from alignment at Ecto-sp6_S_contig10:837602..840640+ >mRNA_Ecto-sp6_S_contig10.500.1 ID=mRNA_Ecto-sp6_S_contig10.500.1|Name=mRNA_Ecto-sp6_S_contig10.500.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=636bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:837602..840640+ (Ectocarpus species6 EcLAC_371) ATGACCAACAAGCAATCGTATGAGATGATCCAGGCGGGTGCCGGGGCAGC AGCCCTTGAACGGGGGGAGGAAGGGTCGCTGATAGCTGGCACTGAGCGGC GGCGCAAAGGATGGGTGGTACCGGCGTTGGCGGCGGCGGTTGGTGTCGCT CTGCTGCTGGCCTGTGGATTGTCTGCTCATGCTCGGGAGGATGCTTCCGC TGCCGGCGCTGCCGCGACCCCCATGCAAGCCTCCACGGACAGCGTCCCTT CCTGCAGCCTCCTTTCCTGCACGAGCTCGGGCTGCGACTGGGACGGGGCC CCTTTCCTCTGCCTGGACGGGGGCTCCGCTGGAGGGTGCGCAGACAGCGC CTCTACGTGGTCTGGAGGCGACGGCTGCACGTCCTTCTGCGACCTCTCCG GCTGCGCCGATACCCTTGAGAACACCGGCGTGGACGACCTGCCGCGGCGC TGCCTGGAGTGCGACGAAACACAGTGCTCCAACCTGGCCGGGCACCCGTC GCAGGCGTGCGGCAGCACGGTGCCGTTCGTGTGTCTCTCCGGCGCAGCCA CCTGGGGCTGCGCGGATAACGAGCTGGCGTGGGCAAGCGCACCTTCGACA ACGTGTGGCGAGTGCTGCGATGTCAGCGGCTGCTAA back to top
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