mRNA_Ecto-sp6_S_contig10.486.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig10.486.1
Unique NamemRNA_Ecto-sp6_S_contig10.486.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
[Close]
BLAST of mRNA_Ecto-sp6_S_contig10.486.1 vs. uniprot
Match: A0A6H5KS48_9PHAE (Post-SET domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS48_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 5.050e-9
Identity = 29/42 (69.05%), Postives = 31/42 (73.81%), Query Frame = 3 
Query:  156 PVRSRRNTHHLLYTWPTEDGKLATRFSPKGHSSAVGEVIASA 281
            P R   N  + LY WPTED  LATR+SPKGHSS VGEVIASA
Sbjct:   76 PARMTTNGIYPLYAWPTEDDTLATRYSPKGHSSEVGEVIASA 117
[Close]
BLAST of mRNA_Ecto-sp6_S_contig10.486.1 vs. uniprot
Match: D7FS13_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FS13_ECTSI)

HSP 1 Score: 62.8 bits (151), Expect = 6.340e-9
Identity = 34/54 (62.96%), Postives = 37/54 (68.52%), Query Frame = 3 
Query:  189 LYTWPTEDGKLATRFSPKGHSSAVG--------EVIASA*THTALWMDAGLEPG 326
            +Y W  EDGKLA     KGHSSAVG        EVIASA T+TALW+DAGLEPG
Sbjct:  310 IYAWRAEDGKLAKIL--KGHSSAVGRVLCSPKYEVIASACTNTALWIDAGLEPG 361
[Close]
BLAST of mRNA_Ecto-sp6_S_contig10.486.1 vs. uniprot
Match: A0A6H5JJ62_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ62_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 7.530e-9
Identity = 32/55 (58.18%), Postives = 33/55 (60.00%), Query Frame = 3 
Query:  189 LYTWPTEDGKLATRFSPKGHSSAVG---------EVIASA*THTALWMDAGLEPG 326
            +Y W  E GKLA     KGHSSAV          EV ASA TH ALWMDAGLEPG
Sbjct:   13 IYAWRAEGGKLAKNL--KGHSSAVDRVLLVGPKHEVTASARTHMALWMDAGLEPG 65
[Close]
BLAST of mRNA_Ecto-sp6_S_contig10.486.1 vs. uniprot
Match: D7FHZ8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHZ8_ECTSI)

HSP 1 Score: 59.3 bits (142), Expect = 6.940e-8
Identity = 32/55 (58.18%), Postives = 34/55 (61.82%), Query Frame = 3 
Query:  189 LYTWPTEDGKLATRFSPKGHSSAVG---------EVIASA*THTALWMDAGLEPG 326
            +Y W  E GKL      KGHSSAVG         EV+AS  THTALWMDAGLEPG
Sbjct:   74 IYAWCAEGGKLTKIL--KGHSSAVGRVLLVGPKYEVMASVRTHTALWMDAGLEPG 126
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig10.486.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KS48_9PHAE5.050e-969.05Post-SET domain-containing protein n=1 Tax=Ectocar... [more]
D7FS13_ECTSI6.340e-962.96Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JJ62_9PHAE7.530e-958.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FHZ8_ECTSI6.940e-858.18Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig10contigEcto-sp6_S_contig10:705240..706248 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size399
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-15_002690.1
Cds size399
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348702.1285176-CDS-Ecto-sp6_S_contig10:705239..7055541682348702.1285176-CDS-Ecto-sp6_S_contig10:705239..705554Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 705240..705554 -
1682348702.1391761-CDS-Ecto-sp6_S_contig10:706164..7062481682348702.1391761-CDS-Ecto-sp6_S_contig10:706164..706248Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 706165..706248 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig10.486.1prot_Ecto-sp6_S_contig10.486.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig10 705240..706248 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig10.486.1

>prot_Ecto-sp6_S_contig10.486.1 ID=prot_Ecto-sp6_S_contig10.486.1|Name=mRNA_Ecto-sp6_S_contig10.486.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=133bp
FVSRRGVADGGHDSTRRAASTRSAWNEKVFTGHQNDLRSGLDACFAPNAQ
YVLSGPEETHIISCTPGQRKTVNLPQDSLPRGTRPRLARSSRARERTRRC
GWTRVWNRGIGILIFAGGVSFSLGATPTAAVR*
back to top

mRNA from alignment at Ecto-sp6_S_contig10:705240..706248-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig10.486.1 ID=mRNA_Ecto-sp6_S_contig10.486.1|Name=mRNA_Ecto-sp6_S_contig10.486.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=1009bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:705240..706248- (Ectocarpus species6 EcLAC_371)
TTTGTCTCACGGCGTGGCGTTGCTGACGGCGGACACGACAGTACGAGAAG
GGCCGCTTCGACACGTTCAGCGTGGAACGAAAAGGTGCCGTGCGCTTGAT
GTTTTATTTTGGTTTCCTTTTCCTCCCTTTTTGCTACAACCCGCAGTTTT
ACCTTCCGTTCACACCCTTCTCTTTCAATACAGCCGTAGCTCTAGTCCGG
GACCGCGAGTTGCGAGTGCAGATTTTTCGGGTCGATTTTGGCTTGCACGT
GAGATCAAATGATTTCCTACCGCGTTTTACGGCTCAGGTTCCTTCGTTCC
TAGGGATTTAGTCCCGATTCCGTGCCATGCAACCCTCGCCTGGGGAGAGG
CAGGTGTATCGTTCATCAGGTATGAGACTGCCACGCCACAGCACACGCAA
GGTACCGCTTGGTATTGGCCTCACCCTGTTTTTTGTGCACGCTACGGCTG
CAGTGGTAGAACCTCAGAACCTGCTTGTCTACTCGGGCTCCTGCAAACGG
TCGAAGAACACCGCTGCACTAACAAGACCCTCATCAGTTGCAACAATGTT
TCATGGAATGGTCTGATGGCATTCATAGCACCGCAACTTTCTTTAACGCT
CTTCTTCCCAACCCGCCCTCGCCGCAACTCTTACTTACACCTTCTCGCAC
TGGCTGCGCGTTCCGCTTGCTACGACCTGCAACTACAGATCCAGGTGTTC
ACCGGGCACCAGAACGACCTGCGCTCGGGGCTGGACGCGTGCTTCGCCCC
GAACGCGCAGTACGTCCTGTCCGGTCCCGAAGAAACACACATCATCTCCT
GTACACCTGGCCAACGGAAGACGGTAAACTTGCCACAAGATTCTCTCCCA
AGGGGCACTCGTCCGCGGTTGGCGAGGTCATCGCGAGCGCGTGAACGCAC
ACGGCGCTGTGGATGGACGCGGGTTTGGAACCGGGGCATTGGGATTTTGA
TCTTCGCGGGTGGTGTGTCTTTTTCGCTGGGCGCTACGCCTACTGCTGCT
GTTCGATAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp6_S_contig10:705240..706248-

>mRNA_Ecto-sp6_S_contig10.486.1 ID=mRNA_Ecto-sp6_S_contig10.486.1|Name=mRNA_Ecto-sp6_S_contig10.486.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=399bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:705240..706248- (Ectocarpus species6 EcLAC_371)
TTTGTCTCACGGCGTGGCGTTGCTGACGGCGGACACGACAGTACGAGAAG
GGCCGCTTCGACACGTTCAGCGTGGAACGAAAAGGTGTTCACCGGGCACC
AGAACGACCTGCGCTCGGGGCTGGACGCGTGCTTCGCCCCGAACGCGCAG
TACGTCCTGTCCGGTCCCGAAGAAACACACATCATCTCCTGTACACCTGG
CCAACGGAAGACGGTAAACTTGCCACAAGATTCTCTCCCAAGGGGCACTC
GTCCGCGGTTGGCGAGGTCATCGCGAGCGCGTGAACGCACACGGCGCTGT
GGATGGACGCGGGTTTGGAACCGGGGCATTGGGATTTTGATCTTCGCGGG
TGGTGTGTCTTTTTCGCTGGGCGCTACGCCTACTGCTGCTGTTCGATAG
back to top