mRNA_Ecto-sp13_S_contig17005.4997.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17005.4997.1
Unique NamemRNA_Ecto-sp13_S_contig17005.4997.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17005.4997.1 vs. uniprot
Match: A0A6H5JEG7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEG7_9PHAE)

HSP 1 Score: 451 bits (1161), Expect = 2.380e-138
Identity = 280/332 (84.34%), Postives = 289/332 (87.05%), Query Frame = 3 
Query:    3 FYGSFAGGVTPPGSTGLMVPSTQPTMQVAGWQQPASQHVVTSVVATAGAAASNPSPTTAEGGNSGLAAEAAPFIPAGAMGVGSPAMWGMAGPQLQQQPTGVGAPSPGAASVNAINPTMLTPPTMGGQGVSFGASAVPHGRPTPSPARFATQRGLQQVQXXXXXXXXXXXXXXXXXXXXX------WLIAGAGGMVSAQSNHPRPPRGAQVSGPRSSQGSPSGGWGAASKVHSVAVRGTAVPTSTSSRRPTGTAVHGRGSPGRQGNRGGTSGGGTAAQNVGSSTAAAGKRAKKTNSQALYVPKRSTPRGPGPGSNAQPNSGSASVAAVPAAGS 980
            FYGSFAGGVTPPGSTGLMVPSTQPTMQVA WQQPASQH+VTSVVATA +AASNP  + AEGGNSGLAAEAAPFIPAGAMGVGSPAMWGMAGPQ QQQPTGVGAPSPGAASVNAINPTMLT PTMGGQGVSFGASAVP GRPTPSPARFATQ+GLQQVQXXXXXXXXXXXXXXXXXXXXX      WLIAG GGMV AQS+HPRPPRGAQ+SGPR SQGSPSGGWGAA K HS+AVRGTAVP+S SSRRPTGTAVHGRGSPGRQGN                     GKRAKKTNSQALYVPKRSTPRGPG  SNAQPN+GSASVAAVPAAGS
Sbjct: 2500 FYGSFAGGVTPPGSTGLMVPSTQPTMQVARWQQPASQHIVTSVVATAASAASNPPLSMAEGGNSGLAAEAAPFIPAGAMGVGSPAMWGMAGPQTQQQPTGVGAPSPGAASVNAINPTMLTLPTMGGQGVSFGASAVPPGRPTPSPARFATQQGLQQVQXXXXXXXXXXXXXXXXXXXXXXXXXXXWLIAGTGGMVPAQSSHPRPPRGAQLSGPRPSQGSPSGGWGAAGKAHSIAVRGTAVPSSNSSRRPTGTAVHGRGSPGRQGNGXXXXXXXXXXXXXXXXXXXXGKRAKKTNSQALYVPKRSTPRGPGSESNAQPNAGSASVAAVPAAGS 2831
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17005.4997.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JEG7_9PHAE2.380e-13884.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17005contigEcto-sp13_S_contig17005:149..2132 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1541
Hectar predicted targeting categoryother localisation
Exons2
Cds size930
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462891.5206807-UTR-Ecto-sp13_S_contig17005:148..2011681462891.5206807-UTR-Ecto-sp13_S_contig17005:148..201Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig17005 149..201 +
1681462891.5520484-UTR-Ecto-sp13_S_contig17005:1574..21321681462891.5520484-UTR-Ecto-sp13_S_contig17005:1574..2132Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig17005 1575..2132 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462891.5311873-CDS-Ecto-sp13_S_contig17005:201..6541681462891.5311873-CDS-Ecto-sp13_S_contig17005:201..654Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17005 202..654 +
1681462891.5413811-CDS-Ecto-sp13_S_contig17005:1097..15741681462891.5413811-CDS-Ecto-sp13_S_contig17005:1097..1574Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17005 1098..1574 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17005.4997.1prot_Ecto-sp13_S_contig17005.4997.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17005 202..1574 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17005.4997.1

>prot_Ecto-sp13_S_contig17005.4997.1 ID=prot_Ecto-sp13_S_contig17005.4997.1|Name=mRNA_Ecto-sp13_S_contig17005.4997.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=310bp
MVPSTQPTMQVAGWQQPASQHVVTSVVATAGAAASNPSPTTAEGGNSGLA
AEAAPFIPAGAMGVGSPAMWGMAGPQLQQQPTGVGAPSPGAASVNAINPT
MLTPPTMGGQGVSFGASAVPHGRPTPSPARFATQRGLQQVQQQQHPQQQQ
PLFQLQQQQQQQWLIAGAGGMVSAQSNHPRPPRGAQVSGPRSSQGSPSGG
WGAASKVHSVAVRGTAVPTSTSSRRPTGTAVHGRGSPGRQGNRGGTSGGG
TAAQNVGSSTAAAGKRAKKTNSQALYVPKRSTPRGPGPGSNAQPNSGSAS
VAAVPAAGS*
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mRNA from alignment at Ecto-sp13_S_contig17005:149..2132+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17005.4997.1 ID=mRNA_Ecto-sp13_S_contig17005.4997.1|Name=mRNA_Ecto-sp13_S_contig17005.4997.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1984bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17005:149..2132+ (Ectocarpus species13 EcNAP12_S_4_19m)
CATTCTACGGCTCCTTCGCTGGTGGCGTTACTCCGCCGGGAAGCACCGGT
CTCATGGTTCCCTCTACCCAGCCCACCATGCAAGTCGCCGGGTGGCAGCA
GCCAGCCTCACAGCACGTCGTCACTAGCGTCGTCGCCACAGCGGGAGCGG
CGGCAAGCAATCCCTCGCCAACCACGGCAGAAGGCGGAAACTCGGGCCTT
GCCGCAGAGGCCGCACCCTTCATCCCGGCAGGAGCTATGGGGGTTGGAAG
CCCGGCTATGTGGGGGATGGCGGGACCGCAACTTCAGCAACAGCCGACCG
GTGTAGGTGCCCCTTCTCCAGGAGCGGCATCGGTAAACGCGATAAACCCA
ACAATGCTGACCCCGCCGACGATGGGGGGCCAAGGTGTGAGCTTCGGTGC
CTCAGCCGTTCCGCACGGACGGCCGACTCCGTCCCCGGCGAGGTTTGCCA
CACAGCGAGGTTTGCAGCAGGTTCAGCAGCAACAGCATCCGCAACAACAG
CAACCGGTACGAAACTTGCTGCACGTATCTTGATGTGCCCTGTAGCGCGC
AAAGAATACTTGAGTCGCAAGGTCTTGTCAGCTTTCTCCAGTCGAGAGGT
GACGACGAATTTTTTCGTATTTTCCTATTCCCCAGTAGTGCTCAGGTTGT
GAATGCAATACAAGCAGACACAGGTGGGCTATTTCGACCCGGGTAGATAT
CGATGTAAGCCTTGTATGTTTGTTTCGTACGGAGTACATCACTGCCAGTG
ACGGCACCAGTGTTTGTGGGCATCGTCCTAGTTTGGGCATATACCCCGGT
ACGTTTTGGATGCAACAGCCGGGACCCCACAGAAATAGAGAAGGCTACAC
ACAGTGGTTGCTCTTCTCATGATTTGCTATGTATGATACGTGTCCGATTG
CGGCCCGCCGTGTGCCACGCCCCACGCTCTCCCTGCCCAACTACCGCAGC
TTTTTCAACTGCAGCAGCAGCAGCAGCAGCAGTGGCTGATAGCCGGGGCG
GGGGGTATGGTTTCTGCACAAAGCAACCACCCGCGGCCTCCTAGAGGTGC
ACAAGTTTCGGGGCCCAGGTCTTCCCAGGGCAGCCCTTCGGGTGGCTGGG
GAGCGGCAAGCAAAGTTCATAGCGTCGCGGTTAGAGGAACAGCAGTACCA
ACTTCCACCTCATCGAGGAGGCCAACTGGCACCGCGGTGCATGGAAGAGG
AAGCCCGGGTAGGCAAGGAAACAGAGGTGGTACCTCTGGGGGTGGCACAG
CAGCACAGAACGTCGGGTCCTCGACAGCTGCTGCGGGTAAGAGGGCCAAG
AAGACCAACTCGCAGGCGTTGTATGTCCCGAAAAGGTCGACGCCCCGTGG
ACCTGGGCCTGGAAGCAATGCGCAGCCAAATTCTGGGTCTGCTTCCGTTG
CCGCTGTGCCTGCCGCGGGCTCGTGACGTGAATGCCTGTTAGATAAACCC
GATTTTCGGGAAACATGAGAGCTCAAGTTTTTTTCGCAGGCGTTGTTGTA
TGTGTGGTAGAGCCGAGTGCGTGGCTGTGGCGAATAATTCATTGCGTCAT
TCCTTGCGCTTGTGAAAAGTATGCAAAGTACGCTGGTGTCAAAAATAGGT
TTAGGGGGCGGGGAAGAAGTAAATGTTGCTTTTTTTTTCGATTTTTCATC
GTGCCGGTGCTTCGCGAGTCCGTATTTCTAATTACCTGAGGACGTGGGAA
GGTTTTGCCCGGACGATGTGTTATGGTTTTGCGAAGCCTTCTGGATTGGA
ACGTGTCTTTCGCGGCTCACACGCCAGCTAGCGATAGTCTTTGCCTGGGC
CGGGCGAGGTAGGGGGATCTGGGATCTTGCACAACGCCGGCCGGCGCTAC
ATGTGTGTAGATCACGCACGCGTGCGTTGGATGAATTAATTCATACGCAT
ACCGTCATTACCGGCCACGCGTGGGGGCGCTGATTCTCGTCAAACCACAC
ATCGCTCTACTCCTGCGGGCAGGCTTGGTCACGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17005:149..2132+

>mRNA_Ecto-sp13_S_contig17005.4997.1 ID=mRNA_Ecto-sp13_S_contig17005.4997.1|Name=mRNA_Ecto-sp13_S_contig17005.4997.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=930bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17005:149..2132+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTTCCCTCTACCCAGCCCACCATGCAAGTCGCCGGGTGGCAGCAGCC
AGCCTCACAGCACGTCGTCACTAGCGTCGTCGCCACAGCGGGAGCGGCGG
CAAGCAATCCCTCGCCAACCACGGCAGAAGGCGGAAACTCGGGCCTTGCC
GCAGAGGCCGCACCCTTCATCCCGGCAGGAGCTATGGGGGTTGGAAGCCC
GGCTATGTGGGGGATGGCGGGACCGCAACTTCAGCAACAGCCGACCGGTG
TAGGTGCCCCTTCTCCAGGAGCGGCATCGGTAAACGCGATAAACCCAACA
ATGCTGACCCCGCCGACGATGGGGGGCCAAGGTGTGAGCTTCGGTGCCTC
AGCCGTTCCGCACGGACGGCCGACTCCGTCCCCGGCGAGGTTTGCCACAC
AGCGAGGTTTGCAGCAGGTTCAGCAGCAACAGCATCCGCAACAACAGCAA
CCGCTTTTTCAACTGCAGCAGCAGCAGCAGCAGCAGTGGCTGATAGCCGG
GGCGGGGGGTATGGTTTCTGCACAAAGCAACCACCCGCGGCCTCCTAGAG
GTGCACAAGTTTCGGGGCCCAGGTCTTCCCAGGGCAGCCCTTCGGGTGGC
TGGGGAGCGGCAAGCAAAGTTCATAGCGTCGCGGTTAGAGGAACAGCAGT
ACCAACTTCCACCTCATCGAGGAGGCCAACTGGCACCGCGGTGCATGGAA
GAGGAAGCCCGGGTAGGCAAGGAAACAGAGGTGGTACCTCTGGGGGTGGC
ACAGCAGCACAGAACGTCGGGTCCTCGACAGCTGCTGCGGGTAAGAGGGC
CAAGAAGACCAACTCGCAGGCGTTGTATGTCCCGAAAAGGTCGACGCCCC
GTGGACCTGGGCCTGGAAGCAATGCGCAGCCAAATTCTGGGTCTGCTTCC
GTTGCCGCTGTGCCTGCCGCGGGCTCGTGA
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