mRNA_Ecto-sp13_S_contig17000.4993.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17000.4993.1
Unique NamemRNA_Ecto-sp13_S_contig17000.4993.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17000.4993.1 vs. uniprot
Match: D7G3C4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3C4_ECTSI)

HSP 1 Score: 250 bits (638), Expect = 1.440e-71
Identity = 195/222 (87.84%), Postives = 198/222 (89.19%), Query Frame = 3 
Query:   24 TKESRNPLWAKPGPDADGGWEECKESEPPMGRAMPPCKVLTPSRKLRQVAAARPVLYLGSGTPPPPRVILLDANSNSSSRGEETINDGSGGAVDLSGEAEEKGVVAVATEVEPATPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRFERMIMGGSVGRGDRKPSSPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSLNAGGSSPGSVGSS 689
            TKESR+PLWAKP PDADGGWEECKESEPPMGRA+PPCKVLTPSRKLRQVAAARPVLYLGSGTPPPPRVILLDANSNSSSRGEETIND SGGA DLSGEAE KGVVAVATEVEPATP  XXXXXXXXXXXXXXXXXXX          R ERM+MGGSVGRGDRKPSSPS      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSLNAGGSS GSVGSS
Sbjct: 1307 TKESRSPLWAKPSPDADGGWEECKESEPPMGRAVPPCKVLTPSRKLRQVAAARPVLYLGSGTPPPPRVILLDANSNSSSRGEETINDESGGADDLSGEAEVKGVVAVATEVEPATPVAXXXXXXXXXXXXXXXXXXX----------RLERMVMGGSVGRGDRKPSSPSPGAKTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSLNAGGSSVGSVGSS 1518
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BLAST of mRNA_Ecto-sp13_S_contig17000.4993.1 vs. uniprot
Match: A0A6H5KVX8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVX8_9PHAE)

HSP 1 Score: 235 bits (600), Expect = 1.780e-66
Identity = 183/227 (80.62%), Postives = 189/227 (83.26%), Query Frame = 3 
Query:    9 EKEADTKESRNPLWAKPGPDADGGWEECKESEPPMGRAMPPCKVLTPSRKLRQVAAARPVLYLGSGTPPPPRVILLDANSNSSSRGEETINDGSGGAVDLSGEAEEKGVVAVATEVEPATPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRFERMIMGGSVGRGDRKPSSPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSLNAGGSSPGSVGSS 689
            EKE +TKESRNPLWAKPGPDADGGWEECKESEPPMGRA+PPCKVLTPSRKLRQVAAARPVLYLGSGTPP PRVILLDANS+SSSRGEETIND S GAVDLSGEAEEKG+VAVATEVEPATP  XXXXXXXXXXXXXXXXXXXXXXXX     R ERM+ G SVGRGDR  SSPS                XXXXXXXXXXXXXXXXX    PSL+AGGSS  SVGSS
Sbjct: 1287 EKETETKESRNPLWAKPGPDADGGWEECKESEPPMGRAVPPCKVLTPSRKLRQVAAARPVLYLGSGTPPAPRVILLDANSDSSSRGEETINDESSGAVDLSGEAEEKGIVAVATEVEPATPVAXXXXXXXXXXXXXXXXXXXXXXXX-----RLERMMTGRSVGRGDRHLSSPSRGAMAAPAPESIAIAAXXXXXXXXXXXXXXXXXSDS-PSLSAGGSSTVSVGSS 1507
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17000.4993.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G3C4_ECTSI1.440e-7187.84Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KVX8_9PHAE1.780e-6680.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17000contigEcto-sp13_S_contig17000:462..2199 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score194.5
Seed ortholog evalue4.6e-47
Seed eggNOG ortholog2880.D7G3C4
Preferred nameCHAF1A
Model size919
KEGG koko:K10750
Hectar predicted targeting categorymitochondrion
GOsGO:0000228,GO:0000278,GO:0000724,GO:0000725,GO:0000785,GO:0000790,GO:0003674,GO:0003682,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006302,GO:0006310,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006335,GO:0006338,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007275,GO:0007346,GO:0007444,GO:0008150,GO:0008152,GO:0008283,GO:0009058,GO:0009059,GO:0009314,GO:0009555,GO:0009628,GO:0009888,GO:0009934,GO:0009987,GO:0010026,GO:0010212,GO:0010332,GO:0010389,GO:0010448,GO:0010449,GO:0010564,GO:0016043,GO:0019904,GO:0022402,GO:0022603,GO:0022607,GO:0022622,GO:0030154,GO:0031497,GO:0031507,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033186,GO:0033554,GO:0034622,GO:0034641,GO:0034645,GO:0034723,GO:0034728,GO:0035264,GO:0035266,GO:0035295,GO:0040007,GO:0042023,GO:0042393,GO:0042802,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044770,GO:0044772,GO:0044786,GO:0045787,GO:0046483,GO:0048229,GO:0048364,GO:0048366,GO:0048367,GO:0048507,GO:0048509,GO:0048513,GO:0048518,GO:0048522,GO:0048589,GO:0048731,GO:0048827,GO:0048856,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051082,GO:0051276,GO:0051716,GO:0051726,GO:0060429,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0070087,GO:0070828,GO:0071103,GO:0071704,GO:0071824,GO:0071840,GO:0080186,GO:0090304,GO:0090558,GO:0099402,GO:1901360,GO:1901576,GO:1901987,GO:1901990,GO:1902749,GO:1903047
Exons2
EggNOG free text desc.nucleosome assembly
EggNOG OGsKOG4364@1,KOG4364@2759
Cds size582
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462891.2615035-UTR-Ecto-sp13_S_contig17000:461..5711681462891.2615035-UTR-Ecto-sp13_S_contig17000:461..571Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig17000 462..571 +
1681462891.2916608-UTR-Ecto-sp13_S_contig17000:1972..21991681462891.2916608-UTR-Ecto-sp13_S_contig17000:1972..2199Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig17000 1973..2199 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462891.2745328-CDS-Ecto-sp13_S_contig17000:571..5981681462891.2745328-CDS-Ecto-sp13_S_contig17000:571..598Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17000 572..598 +
1681462891.2829351-CDS-Ecto-sp13_S_contig17000:1417..19721681462891.2829351-CDS-Ecto-sp13_S_contig17000:1417..1972Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17000 1418..1972 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17000.4993.1prot_Ecto-sp13_S_contig17000.4993.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17000 572..1972 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17000.4993.1

>prot_Ecto-sp13_S_contig17000.4993.1 ID=prot_Ecto-sp13_S_contig17000.4993.1|Name=mRNA_Ecto-sp13_S_contig17000.4993.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=194bp
MGRAMPPCKVLTPSRKLRQVAAARPVLYLGSGTPPPPRVILLDANSNSSS
RGEETINDGSGGAVDLSGEAEEKGVVAVATEVEPATPVAAAAAAAGEGTA
AAAAAAAAAAAATVTTTTRFERMIMGGSVGRGDRKPSSPSPGAKTAPAPE
SIAIAAAGGGQGGENEASVAAASASASPSLNAGGSSPGSVGSS*
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mRNA from alignment at Ecto-sp13_S_contig17000:462..2199+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17000.4993.1 ID=mRNA_Ecto-sp13_S_contig17000.4993.1|Name=mRNA_Ecto-sp13_S_contig17000.4993.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1738bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17000:462..2199+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGGGGAAGGAGAAGGAGGCGGACACGAAGGAGTCGCGTAACCCCCTGTGG
GCCAAGCCTGGCCCCGATGCGGACGGTGGGTGGGAGGAGTGCAAGGAGTC
GGAACCCCCCATGGGCAGGGCGATGCCCCCGTGCAAGGTGAACAAGGAAG
GTTGGCGTTTGTTTATGAAGCGCAGATTTTGCTGGTGCTGCTGCTGCTGC
TGCTGCTGCTGCTGCTGCTGATGTTGTCGTTGCCGTAGTTGTTTCTGGGC
TAATTTGCATGTGATTGACGCAACTTTTCTCCTTGGTGTTGGAGGTGGAC
TGAATTTTTGTTGTGGTTTCTCCGCCTTGCGTTTCTTTCTCCGTCGTGAG
GCTATGAATCGGCCACAGGATGGGTATAGAGACGAATCAGTGTTGCTGGT
GTATCATACGACCCCACACAGATACATGTTTCTTGAAGCCGTTGTCCATT
GCTTTCTCACCCTTCGTGCACCGATGAAGGGCTTCCCTTTTTCCTTAATT
TTCTTTCGCTTGTTGCCGTACCACCTGCGATTGCCCTGTCTTGTCATTCG
AGCATTTGTCTACGGTGTCATCCTCTCTTCCACAACTCGCGAGTGCCCCC
GCGAAATACTGGTTCATCTGCCTGACGCACAACAGTAGGCTTTCACCCTC
TTTGTCACCCACACCAGGGCGAAGTCTCTCCTTCCGCCGCCGTGCCAGGC
ACGAGTCATTTGTTACATCTGCCCTCCGACGCAATGAAAAAGAGTATCCA
AAAAAGCCTACACACCTGTTTGTCGCGCCTGTTTGCCACCCCCGGCGAAC
TCTTTCCTCCCTCCCTCCGCCGTTCCAGAGGTGCGAGTCGCTGTTTCATC
TGCCTCACGTATCTAGAATAAAGCTTTCACACACACCTGCTTGACACCCC
TAGCGAACCCTCTCCTCCCTCTCCGCCATGCCCACCACCGCCACCGCTAC
CAACAGGTCCTGACGCCTTCGAGGAAGCTCCGCCAGGTGGCGGCCGCGCG
GCCGGTCCTCTACCTCGGCTCCGGGACCCCGCCGCCGCCGCGCGTGATCC
TCCTCGACGCCAACAGCAACAGCAGCAGCCGGGGGGAGGAGACGATCAAC
GACGGGAGCGGCGGCGCAGTCGACCTCAGCGGAGAGGCGGAAGAGAAGGG
TGTCGTGGCTGTCGCCACCGAGGTTGAACCGGCGACACCGGTAGCGGCAG
CGGCAGCGGCGGCGGGGGAGGGGACCGCTGCAGCGGCCGCGGCGGCGGCG
GCGGCGGCGGCTGCCACGGTGACCACCACGACGCGGTTCGAGCGGATGAT
TATGGGGGGGAGCGTCGGACGCGGCGACCGTAAGCCGTCGTCTCCGTCCC
CCGGAGCGAAGACCGCTCCTGCCCCTGAATCTATTGCGATTGCTGCGGCG
GGAGGAGGGCAAGGTGGAGAGAACGAGGCGTCGGTAGCGGCGGCGTCGGC
ATCGGCGTCGCCCTCCCTGAACGCGGGTGGCAGCAGTCCCGGTAGTGTGG
GTAGCTCCTAGAGGAGAGAGGCATGATGTCGCAATCGCTGGGAGAACGTT
GGCGTGCGGGGCCGCCTCCATTAGGTTATCTTCCCGTCCACGCCGGCAGA
GCAACGCCGCACTCCGAATCAAACCCTCGTTCAGTTTTCCGTTTCTCGCG
GAACGAGGACGTGCTCGGCAGGCTAGCGCGCGCGTCATACCGCTCAGCTC
GCGGGCCGCCTCGCCTTTGGAGGGGTAGAAGAGTGGCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17000:462..2199+

>mRNA_Ecto-sp13_S_contig17000.4993.1 ID=mRNA_Ecto-sp13_S_contig17000.4993.1|Name=mRNA_Ecto-sp13_S_contig17000.4993.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=582bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17000:462..2199+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGCAGGGCGATGCCCCCGTGCAAGGTCCTGACGCCTTCGAGGAAGCT
CCGCCAGGTGGCGGCCGCGCGGCCGGTCCTCTACCTCGGCTCCGGGACCC
CGCCGCCGCCGCGCGTGATCCTCCTCGACGCCAACAGCAACAGCAGCAGC
CGGGGGGAGGAGACGATCAACGACGGGAGCGGCGGCGCAGTCGACCTCAG
CGGAGAGGCGGAAGAGAAGGGTGTCGTGGCTGTCGCCACCGAGGTTGAAC
CGGCGACACCGGTAGCGGCAGCGGCAGCGGCGGCGGGGGAGGGGACCGCT
GCAGCGGCCGCGGCGGCGGCGGCGGCGGCGGCTGCCACGGTGACCACCAC
GACGCGGTTCGAGCGGATGATTATGGGGGGGAGCGTCGGACGCGGCGACC
GTAAGCCGTCGTCTCCGTCCCCCGGAGCGAAGACCGCTCCTGCCCCTGAA
TCTATTGCGATTGCTGCGGCGGGAGGAGGGCAAGGTGGAGAGAACGAGGC
GTCGGTAGCGGCGGCGTCGGCATCGGCGTCGCCCTCCCTGAACGCGGGTG
GCAGCAGTCCCGGTAGTGTGGGTAGCTCCTAG
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