mRNA_Ecto-sp13_S_contig16988.4973.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16988.4973.1
Unique NamemRNA_Ecto-sp13_S_contig16988.4973.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16988.4973.1 vs. uniprot
Match: D7FXN5_ECTSI (RRM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXN5_ECTSI)

HSP 1 Score: 137 bits (346), Expect = 7.010e-41
Identity = 65/74 (87.84%), Postives = 70/74 (94.59%), Query Frame = 1 
Query:    1 ISLQELERLFAGCHGFESCRVRKDKNEHDVGFVDFLDNESATIAKERFKGHVFRGHPIGAEATASRTSTTSSSV 222
            I+ +ELERLFAGCHGFESCRVRKDKNEHDVGFVDFLD ESATIAKERFKGHVFRGHPIGAEATA+RT+T SS +
Sbjct:   20 ITEKELERLFAGCHGFESCRVRKDKNEHDVGFVDFLDTESATIAKERFKGHVFRGHPIGAEATATRTTTASSPI 93
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BLAST of mRNA_Ecto-sp13_S_contig16988.4973.1 vs. uniprot
Match: A0A6H5L4C0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4C0_9PHAE)

HSP 1 Score: 119 bits (298), Expect = 1.550e-30
Identity = 54/58 (93.10%), Postives = 56/58 (96.55%), Query Frame = 1 
Query:    1 ISLQELERLFAGCHGFESCRVRKDKNEHDVGFVDFLDNESATIAKERFKGHVFRGHPI 174
            I+ +ELERLFAGCHGFESCRVRKDKNEHDVGFVDFLD ESATIAKERFKGHVFRGHPI
Sbjct:   20 ITEKELERLFAGCHGFESCRVRKDKNEHDVGFVDFLDTESATIAKERFKGHVFRGHPI 77
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16988.4973.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FXN5_ECTSI7.010e-4187.84RRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5L4C0_9PHAE1.550e-3093.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16988contigEcto-sp13_S_contig16988:2899..3724 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score140.2
Seed ortholog evalue3.9e-31
Seed eggNOG ortholog2880.D7FXN5
Model size225
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
EggNOG OGs2F1EU@1,2T2FC@2759
Ec32 ortholog descriptionRNA recognition motif domain
Ec32 orthologEc-28_002420.1
Cds size225
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462888.9447641-CDS-Ecto-sp13_S_contig16988:2898..29811681462888.9447641-CDS-Ecto-sp13_S_contig16988:2898..2981Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16988 2899..2981 +
1681462888.956896-CDS-Ecto-sp13_S_contig16988:3582..37241681462888.956896-CDS-Ecto-sp13_S_contig16988:3582..3724Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16988 3583..3724 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16988.4973.1prot_Ecto-sp13_S_contig16988.4973.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16988 2899..3724 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16988.4973.1

>prot_Ecto-sp13_S_contig16988.4973.1 ID=prot_Ecto-sp13_S_contig16988.4973.1|Name=mRNA_Ecto-sp13_S_contig16988.4973.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=75bp
ISLQELERLFAGCHGFESCRVRKDKNEHDVGFVDFLDNESATIAKERFKG
HVFRGHPIGAEATASRTSTTSSSV*
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mRNA from alignment at Ecto-sp13_S_contig16988:2899..3724+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16988.4973.1 ID=mRNA_Ecto-sp13_S_contig16988.4973.1|Name=mRNA_Ecto-sp13_S_contig16988.4973.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=826bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16988:2899..3724+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATTTCACTGCAGGAGCTGGAGAGGCTCTTCGCGGGATGCCACGGCTTCGA
GTCTTGCAGGGTCAGGAAAGACAAGAACGAGCAGTGAGTGTGTGTGTGCT
TTGTTTGTGTAGACTACTTGCATGCACAAGGACCTTAAGTGTAAACGTAC
ATACACTGAGCGAGGAGCCCGTTGGGTTGTTTTTCTTTGGAAAAATATGG
ACAACTGTGCGAAGTGATGATCAAGTCTATGGATCCCGGACAATTTTTGC
TTTGGATGGATTCGTTGCGTACCCGTTTTGGTGTAGAACAAAACATCCTC
TGATATGAAACAACACACACAACGAATCCCATCTGTTCTCCACAGATATA
GGAAGTCCGGGACACAGCGGTAACGAGAGATAGCGTTGATAGCGTTGATA
GCGTTACTATGGTAGCCAGCCTGTGTTTTCTGCTGCTCCTCGCGCAGTAG
ACAGCAGTTTCGTCTCCCTTGTGTGGGTAGCAGGGCTGACAAAGATTGTT
TGGTGGCCACACTGCCGTGCTCGCTCTTTGCTTTTTCGACGGTTGTCTCC
AAGTCTCGCATGCGTCGCCGTATGGGCACAACATTTTTGGGCGAAATGCG
CGCCTTGTATTGCGCTGTTGCAAAAAGTTTTGTTTCGTTTTTTCACTCGC
TCGCATGTTGTCTTGCCTGTGGTCGTCTCTCCAGCGACGTCGGGTTCGTG
GATTTCTTGGACAACGAGAGCGCCACCATTGCCAAGGAGCGCTTCAAGGG
CCACGTCTTCCGCGGACACCCAATAGGTGCAGAAGCAACAGCATCAAGAA
CATCAACTACCTCCTCCTCAGTATGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16988:2899..3724+

>mRNA_Ecto-sp13_S_contig16988.4973.1 ID=mRNA_Ecto-sp13_S_contig16988.4973.1|Name=mRNA_Ecto-sp13_S_contig16988.4973.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=225bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16988:2899..3724+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATTTCACTGCAGGAGCTGGAGAGGCTCTTCGCGGGATGCCACGGCTTCGA
GTCTTGCAGGGTCAGGAAAGACAAGAACGAGCACGACGTCGGGTTCGTGG
ATTTCTTGGACAACGAGAGCGCCACCATTGCCAAGGAGCGCTTCAAGGGC
CACGTCTTCCGCGGACACCCAATAGGTGCAGAAGCAACAGCATCAAGAAC
ATCAACTACCTCCTCCTCAGTATGA
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